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Posted to commits@ctakes.apache.org by tm...@apache.org on 2014/10/30 16:56:07 UTC
svn commit: r1635527 -
/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/UncertaintyCleartkAnalysisEngine.java
Author: tmill
Date: Thu Oct 30 15:56:07 2014
New Revision: 1635527
URL: http://svn.apache.org/r1635527
Log:
CTAKES-94: Removed feature referencing un-checked-in data file.
Modified:
ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/UncertaintyCleartkAnalysisEngine.java
Modified: ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/UncertaintyCleartkAnalysisEngine.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/UncertaintyCleartkAnalysisEngine.java?rev=1635527&r1=1635526&r2=1635527&view=diff
==============================================================================
--- ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/UncertaintyCleartkAnalysisEngine.java (original)
+++ ctakes/trunk/ctakes-assertion/src/main/java/org/apache/ctakes/assertion/medfacts/cleartk/UncertaintyCleartkAnalysisEngine.java Thu Oct 30 15:56:07 2014
@@ -58,12 +58,13 @@ public class UncertaintyCleartkAnalysisE
}
this.entityFeatureExtractors.add(new ContextWordWindowExtractor("org/apache/ctakes/assertion/models/uncertainty.txt"));
this.entityFeatureExtractors.add(new UncertaintyFeatureExtractor());
- try {
- this.entityFeatureExtractors.add(new DependencyPathRegexpFeatureExtractor());
- } catch (FileNotFoundException e) {
- e.printStackTrace();
- throw new ResourceInitializationException(e);
- }
+ // TODO: Uncomment below when good features are found:
+// try {
+// this.entityFeatureExtractors.add(new DependencyPathRegexpFeatureExtractor());
+// } catch (FileNotFoundException e) {
+// e.printStackTrace();
+// throw new ResourceInitializationException(e);
+// }
if(featConfig == STK_FRAGS){
this.entityFeatureExtractors.add(new AboveLeftFragmentExtractor("AL_Unc", "org/apache/ctakes/assertion/models/jbi_paper_unc_seed_frags.txt"));
@@ -96,7 +97,6 @@ public class UncertaintyCleartkAnalysisE
return;
}
instance.setOutcome(uncertainty);
-// this.dataWriter.write(instance);
} else
{
String label = this.classifier.classify(instance.getFeatures());
@@ -114,7 +114,6 @@ public class UncertaintyCleartkAnalysisE
public static FeatureSelection<String> createFeatureSelection(double threshold) {
return new Chi2FeatureSelection<>(AssertionCleartkAnalysisEngine.FEATURE_SELECTION_NAME, threshold, false);
- // return new MutualInformationFeatureSelection<String>(AssertionCleartkAnalysisEngine.FEATURE_SELECTION_NAME);
}
public static URI createFeatureSelectionURI(File outputDirectoryName) {
@@ -127,14 +126,6 @@ public class UncertaintyCleartkAnalysisE
this.featureSelection = null;
} else {
this.featureSelection = createFeatureSelection(this.featureSelectionThreshold);
-
-// if ( (new File(this.featureSelectionURI)).exists() ) {
-// try {
-// this.featureSelection.load(this.featureSelectionURI);
-// } catch (IOException e) {
-// throw new ResourceInitializationException(e);
-// }
-// }
}
}