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Posted to commits@commons.apache.org by ra...@apache.org on 2017/04/20 22:34:00 UTC

[1/3] commons-numbers git commit: NUMBERS-20: Establish baseline of files copied from [math].

Repository: commons-numbers
Updated Branches:
  refs/heads/feature-NUMBERS-20 [created] 9e54e498d


NUMBERS-20: Establish baseline of files copied from [math].


Project: http://git-wip-us.apache.org/repos/asf/commons-numbers/repo
Commit: http://git-wip-us.apache.org/repos/asf/commons-numbers/commit/996a3a45
Tree: http://git-wip-us.apache.org/repos/asf/commons-numbers/tree/996a3a45
Diff: http://git-wip-us.apache.org/repos/asf/commons-numbers/diff/996a3a45

Branch: refs/heads/feature-NUMBERS-20
Commit: 996a3a45d5dc92383064594a950b23667df56f21
Parents: b37c9f1
Author: Ray DeCampo <ra...@decampo.org>
Authored: Sun Apr 16 13:04:34 2017 -0400
Committer: Ray DeCampo <ra...@decampo.org>
Committed: Thu Apr 20 18:23:48 2017 -0400

----------------------------------------------------------------------
 .../apache/commons/numbers/primes/Primes.java   | 126 +++++++++++++
 .../commons/numbers/primes/SmallPrimes.java     | 188 +++++++++++++++++++
 .../commons/numbers/primes/package-info.java    |  20 ++
 .../commons/numbers/primes/PrimesTest.java      | 174 +++++++++++++++++
 4 files changed, 508 insertions(+)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/996a3a45/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/Primes.java
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/Primes.java b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/Primes.java
new file mode 100644
index 0000000..db75ccc
--- /dev/null
+++ b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/Primes.java
@@ -0,0 +1,126 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.commons.math4.primes;
+
+import org.apache.commons.math4.exception.MathIllegalArgumentException;
+import org.apache.commons.math4.exception.util.LocalizedFormats;
+
+import java.util.List;
+
+
+/**
+ * Methods related to prime numbers in the range of <code>int</code>:
+ * <ul>
+ * <li>primality test</li>
+ * <li>prime number generation</li>
+ * <li>factorization</li>
+ * </ul>
+ *
+ * @since 3.2
+ */
+public class Primes {
+
+    /**
+     * Hide utility class.
+     */
+    private Primes() {
+    }
+
+    /**
+     * Primality test: tells if the argument is a (provable) prime or not.
+     * <p>
+     * It uses the Miller-Rabin probabilistic test in such a way that a result is guaranteed:
+     * it uses the firsts prime numbers as successive base (see Handbook of applied cryptography
+     * by Menezes, table 4.1).
+     *
+     * @param n number to test.
+     * @return true if n is prime. (All numbers &lt; 2 return false).
+     */
+    public static boolean isPrime(int n) {
+        if (n < 2) {
+            return false;
+        }
+
+        for (int p : SmallPrimes.PRIMES) {
+            if (0 == (n % p)) {
+                return n == p;
+            }
+        }
+        return SmallPrimes.millerRabinPrimeTest(n);
+    }
+
+    /**
+     * Return the smallest prime greater than or equal to n.
+     *
+     * @param n a positive number.
+     * @return the smallest prime greater than or equal to n.
+     * @throws MathIllegalArgumentException if n &lt; 0.
+     */
+    public static int nextPrime(int n) {
+        if (n < 0) {
+            throw new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL, n, 0);
+        }
+        if (n == 2) {
+            return 2;
+        }
+        n |= 1;//make sure n is odd
+        if (n == 1) {
+            return 2;
+        }
+
+        if (isPrime(n)) {
+            return n;
+        }
+
+        // prepare entry in the +2, +4 loop:
+        // n should not be a multiple of 3
+        final int rem = n % 3;
+        if (0 == rem) { // if n % 3 == 0
+            n += 2; // n % 3 == 2
+        } else if (1 == rem) { // if n % 3 == 1
+            // if (isPrime(n)) return n;
+            n += 4; // n % 3 == 2
+        }
+        while (true) { // this loop skips all multiple of 3
+            if (isPrime(n)) {
+                return n;
+            }
+            n += 2; // n % 3 == 1
+            if (isPrime(n)) {
+                return n;
+            }
+            n += 4; // n % 3 == 2
+        }
+    }
+
+    /**
+     * Prime factors decomposition
+     *
+     * @param n number to factorize: must be &ge; 2
+     * @return list of prime factors of n
+     * @throws MathIllegalArgumentException if n &lt; 2.
+     */
+    public static List<Integer> primeFactors(int n) {
+
+        if (n < 2) {
+            throw new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL, n, 2);
+        }
+        return SmallPrimes.trialDivision(n);
+
+    }
+
+}

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/996a3a45/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/SmallPrimes.java
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/SmallPrimes.java b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/SmallPrimes.java
new file mode 100644
index 0000000..6f329e3
--- /dev/null
+++ b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/SmallPrimes.java
@@ -0,0 +1,188 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.commons.math4.primes;
+
+
+import java.math.BigInteger;
+import java.util.ArrayList;
+import java.util.List;
+
+import org.apache.commons.math4.util.FastMath;
+
+/**
+ * Utility methods to work on primes within the <code>int</code> range.
+ * @since 3.2
+ */
+class SmallPrimes {
+
+    /**
+     * The first 512 prime numbers.
+     * <p>
+     * It contains all primes smaller or equal to the cubic square of Integer.MAX_VALUE.
+     * As a result, <code>int</code> numbers which are not reduced by those primes are guaranteed
+     * to be either prime or semi prime.
+     */
+    public static final int[] PRIMES = {2,
+            3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, 41, 43, 47, 53, 59, 61, 67, 71, 73,
+            79, 83, 89, 97, 101, 103, 107, 109, 113, 127, 131, 137, 139, 149, 151, 157, 163, 167, 173, 179,
+            181, 191, 193, 197, 199, 211, 223, 227, 229, 233, 239, 241, 251, 257, 263, 269, 271, 277, 281, 283,
+            293, 307, 311, 313, 317, 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389, 397, 401, 409, 419,
+            421, 431, 433, 439, 443, 449, 457, 461, 463, 467, 479, 487, 491, 499, 503, 509, 521, 523, 541, 547,
+            557, 563, 569, 571, 577, 587, 593, 599, 601, 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661,
+            673, 677, 683, 691, 701, 709, 719, 727, 733, 739, 743, 751, 757, 761, 769, 773, 787, 797, 809, 811,
+            821, 823, 827, 829, 839, 853, 857, 859, 863, 877, 881, 883, 887, 907, 911, 919, 929, 937, 941, 947,
+            953, 967, 971, 977, 983, 991, 997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, 1051, 1061, 1063, 1069, 1087,
+            1091, 1093, 1097, 1103, 1109, 1117, 1123, 1129, 1151, 1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, 1217, 1223, 1229,
+            1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373, 1381,
+            1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523,
+            1531, 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, 1609, 1613, 1619, 1621, 1627, 1637, 1657, 1663,
+            1667, 1669, 1693, 1697, 1699, 1709, 1721, 1723, 1733, 1741, 1747, 1753, 1759, 1777, 1783, 1787, 1789, 1801, 1811, 1823,
+            1831, 1847, 1861, 1867, 1871, 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951, 1973, 1979, 1987, 1993,
+            1997, 1999, 2003, 2011, 2017, 2027, 2029, 2039, 2053, 2063, 2069, 2081, 2083, 2087, 2089, 2099, 2111, 2113, 2129, 2131,
+            2137, 2141, 2143, 2153, 2161, 2179, 2203, 2207, 2213, 2221, 2237, 2239, 2243, 2251, 2267, 2269, 2273, 2281, 2287, 2293,
+            2297, 2309, 2311, 2333, 2339, 2341, 2347, 2351, 2357, 2371, 2377, 2381, 2383, 2389, 2393, 2399, 2411, 2417, 2423, 2437,
+            2441, 2447, 2459, 2467, 2473, 2477, 2503, 2521, 2531, 2539, 2543, 2549, 2551, 2557, 2579, 2591, 2593, 2609, 2617, 2621,
+            2633, 2647, 2657, 2659, 2663, 2671, 2677, 2683, 2687, 2689, 2693, 2699, 2707, 2711, 2713, 2719, 2729, 2731, 2741, 2749,
+            2753, 2767, 2777, 2789, 2791, 2797, 2801, 2803, 2819, 2833, 2837, 2843, 2851, 2857, 2861, 2879, 2887, 2897, 2903, 2909,
+            2917, 2927, 2939, 2953, 2957, 2963, 2969, 2971, 2999, 3001, 3011, 3019, 3023, 3037, 3041, 3049, 3061, 3067, 3079, 3083,
+            3089, 3109, 3119, 3121, 3137, 3163, 3167, 3169, 3181, 3187, 3191, 3203, 3209, 3217, 3221, 3229, 3251, 3253, 3257, 3259,
+            3271, 3299, 3301, 3307, 3313, 3319, 3323, 3329, 3331, 3343, 3347, 3359, 3361, 3371, 3373, 3389, 3391, 3407, 3413, 3433,
+            3449, 3457, 3461, 3463, 3467, 3469, 3491, 3499, 3511, 3517, 3527, 3529, 3533, 3539, 3541, 3547, 3557, 3559, 3571, 3581,
+            3583, 3593, 3607, 3613, 3617, 3623, 3631, 3637, 3643, 3659, 3671};
+
+    /** The last number in PRIMES. */
+    public static final int PRIMES_LAST = PRIMES[PRIMES.length - 1];
+
+    /**
+     * Hide utility class.
+     */
+    private SmallPrimes() {
+    }
+
+    /**
+     * Extract small factors.
+     * @param n the number to factor, must be &gt; 0.
+     * @param factors the list where to add the factors.
+     * @return the part of n which remains to be factored, it is either a prime or a semi-prime
+     */
+    public static int smallTrialDivision(int n, final List<Integer> factors) {
+        for (int p : PRIMES) {
+            while (0 == n % p) {
+                n /= p;
+                factors.add(p);
+            }
+        }
+        return n;
+    }
+
+    /**
+     * Extract factors in the range <code>PRIME_LAST+2</code> to <code>maxFactors</code>.
+     * @param n the number to factorize, must be >= PRIME_LAST+2 and must not contain any factor below PRIME_LAST+2
+     * @param maxFactor the upper bound of trial division: if it is reached, the method gives up and returns n.
+     * @param factors the list where to add the factors.
+     * @return  n or 1 if factorization is completed.
+     */
+    public static int boundedTrialDivision(int n, int maxFactor, List<Integer> factors) {
+        int f = PRIMES_LAST + 2;
+        // no check is done about n >= f
+        while (f <= maxFactor) {
+            if (0 == n % f) {
+                n /= f;
+                factors.add(f);
+                break;
+            }
+            f += 4;
+            if (0 == n % f) {
+                n /= f;
+                factors.add(f);
+                break;
+            }
+            f += 2;
+        }
+        if (n != 1) {
+            factors.add(n);
+        }
+        return n;
+    }
+
+    /**
+     * Factorization by trial division.
+     * @param n the number to factor
+     * @return the list of prime factors of n
+     */
+    public static List<Integer> trialDivision(int n){
+        final List<Integer> factors = new ArrayList<>(32);
+        n = smallTrialDivision(n, factors);
+        if (1 == n) {
+            return factors;
+        }
+        // here we are sure that n is either a prime or a semi prime
+        final int bound = (int) FastMath.sqrt(n);
+        boundedTrialDivision(n, bound, factors);
+        return factors;
+    }
+
+    /**
+     * Miller-Rabin probabilistic primality test for int type, used in such a way that a result is always guaranteed.
+     * <p>
+     * It uses the prime numbers as successive base therefore it is guaranteed to be always correct.
+     * (see Handbook of applied cryptography by Menezes, table 4.1)
+     *
+     * @param n number to test: an odd integer &ge; 3
+     * @return true if n is prime. false if n is definitely composite.
+     */
+    public static boolean millerRabinPrimeTest(final int n) {
+        final int nMinus1 = n - 1;
+        final int s = Integer.numberOfTrailingZeros(nMinus1);
+        final int r = nMinus1 >> s;
+        //r must be odd, it is not checked here
+        int t = 1;
+        if (n >= 2047) {
+            t = 2;
+        }
+        if (n >= 1373653) {
+            t = 3;
+        }
+        if (n >= 25326001) {
+            t = 4;
+        } // works up to 3.2 billion, int range stops at 2.7 so we are safe :-)
+        BigInteger br = BigInteger.valueOf(r);
+        BigInteger bn = BigInteger.valueOf(n);
+
+        for (int i = 0; i < t; i++) {
+            BigInteger a = BigInteger.valueOf(SmallPrimes.PRIMES[i]);
+            BigInteger bPow = a.modPow(br, bn);
+            int y = bPow.intValue();
+            if ((1 != y) && (y != nMinus1)) {
+                int j = 1;
+                while ((j <= s - 1) && (nMinus1 != y)) {
+                    long square = ((long) y) * y;
+                    y = (int) (square % n);
+                    if (1 == y) {
+                        return false;
+                    } // definitely composite
+                    j++;
+                }
+                if (nMinus1 != y) {
+                    return false;
+                } // definitely composite
+            }
+        }
+        return true; // definitely prime
+    }
+}
+

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/996a3a45/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/package-info.java
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/package-info.java b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/package-info.java
new file mode 100644
index 0000000..076ec31
--- /dev/null
+++ b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/package-info.java
@@ -0,0 +1,20 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+/**
+ * Methods related to prime numbers like primality test, factor decomposition.
+ */
+package org.apache.commons.math4.primes;

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/996a3a45/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/PrimesTest.java
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/PrimesTest.java b/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/PrimesTest.java
new file mode 100644
index 0000000..831a86e
--- /dev/null
+++ b/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/PrimesTest.java
@@ -0,0 +1,174 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.commons.math4.primes;
+
+
+import java.util.HashSet;
+import java.util.List;
+
+import org.apache.commons.math4.exception.MathIllegalArgumentException;
+import org.apache.commons.math4.exception.util.LocalizedFormats;
+import org.apache.commons.math4.primes.Primes;
+import org.apache.commons.math4.primes.SmallPrimes;
+import org.junit.Assert;
+import org.junit.Test;
+
+public class PrimesTest {
+
+    public static final int[] PRIMES = {//primes here have been verified one by one using Dario Alejandro Alpern's tool, see http://www.alpertron.com.ar/ECM.HTM
+            2,3,5,7,11,13,17,19,23,29,31,43,47,53,71,73,79,89,97,
+            107,137,151,157,271,293,331,409,607,617,683,829,
+            1049,1103,1229,1657,
+            2039,2053,//around first boundary in miller-rabin
+            2251,2389,2473,2699,3271,3389,3449,5653,6449,6869,9067,9091,
+            11251,12433,12959,22961,41047,46337,65413,80803,91577,92693,
+            118423,656519,795659,
+            1373639,1373677,//around second boundary in miller-rabin
+            588977,952381,
+            1013041,1205999,2814001,
+            22605091,
+            25325981,25326023,//around third boundary in miller-rabin
+            100000007,715827881,
+            2147483647//Integer.MAX_VALUE
+            };
+
+    public static final int[] NOT_PRIMES = {//composite chosen at random + particular values used in algorithms such as boundaries for millerRabin
+            4,6,8,9,10,12,14,15,16,18,20,21,22,24,25,
+            275,
+            2037,2041,2045,2046,2047,2048,2049,2051,2055,//around first boundary in miller-rabin
+            9095,
+            463465,
+            1373637,1373641,1373651,1373652,1373653,1373654,1373655,1373673,1373675,1373679,//around second boundary in miller-rabin
+            25325979,25325983,25325993,25325997,25325999,25326001,25326003,25326007,25326009,25326011,25326021,25326025,//around third boundary in miller-rabin
+            100000005,
+            1073741341,1073741823,2147473649,2147483641,2147483643,2147483645,2147483646};
+
+    public static final int[] BELOW_2 = {
+            Integer.MIN_VALUE,-1,0,1};
+
+    void assertPrimeFactorsException(int n, Throwable expected) {
+        try {
+            Primes.primeFactors(n);
+            Assert.fail("Exception not thrown");
+        } catch (Throwable e) {
+            Assert.assertEquals(expected.getClass(), e.getClass());
+            if (expected.getMessage() != null) {
+                Assert.assertEquals(expected.getMessage(), e.getMessage());
+            }
+        }
+    }
+    void assertNextPrimeException(int n, Throwable expected){
+        try {
+            Primes.nextPrime(n);
+            Assert.fail("Exception not thrown");
+        } catch(Throwable e) {
+            Assert.assertEquals(expected.getClass(), e.getClass());
+            if (expected.getMessage() != null) {
+                Assert.assertEquals(expected.getMessage(), e.getMessage());
+            }
+        }
+    }
+
+    @Test
+    public void testNextPrime() {
+
+        Assert.assertEquals(2, Primes.nextPrime(0));
+        Assert.assertEquals(2, Primes.nextPrime(1));
+        Assert.assertEquals(2, Primes.nextPrime(2));
+        Assert.assertEquals(3, Primes.nextPrime(3));
+        Assert.assertEquals(5, Primes.nextPrime(4));
+        Assert.assertEquals(5, Primes.nextPrime(5));
+
+        for (int i = 0; i < SmallPrimes.PRIMES.length - 1; i++) {
+            for (int j = SmallPrimes.PRIMES[i] + 1; j <= SmallPrimes.PRIMES[i + 1]; j++) {
+                Assert.assertEquals(SmallPrimes.PRIMES[i+1], Primes.nextPrime(j));
+            }
+        }
+
+        Assert.assertEquals(25325981, Primes.nextPrime(25325981));
+        for (int i = 25325981 + 1; i <= 25326023; i++) {
+            Assert.assertEquals(25326023, Primes.nextPrime(i));
+        }
+
+        Assert.assertEquals(Integer.MAX_VALUE, Primes.nextPrime(Integer.MAX_VALUE - 10));
+        Assert.assertEquals(Integer.MAX_VALUE, Primes.nextPrime(Integer.MAX_VALUE - 1));
+        Assert.assertEquals(Integer.MAX_VALUE, Primes.nextPrime(Integer.MAX_VALUE));
+
+        assertNextPrimeException(Integer.MIN_VALUE, new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL,Integer.MIN_VALUE,0));
+        assertNextPrimeException(-1, new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL,-1,0));
+        assertNextPrimeException(-13, new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL,-13,0));
+    }
+
+    @Test
+    public void testIsPrime() throws Exception {
+        for (int i : BELOW_2) {
+            Assert.assertFalse(Primes.isPrime(i));
+        }
+        for (int i:NOT_PRIMES) {
+            Assert.assertFalse(Primes.isPrime(i));
+        }
+        for (int i:PRIMES) {
+            Assert.assertTrue(Primes.isPrime(i));
+        }
+    }
+
+    static int sum(List<Integer> numbers){
+        int out = 0;
+        for (int i:numbers) {
+            out += i;
+        }
+        return out;
+    }
+    static int product(List<Integer> numbers) {
+        int out = 1;
+        for (int i : numbers) {
+            out *= i;
+        }
+        return out;
+    }
+    static final HashSet<Integer> PRIMES_SET = new HashSet<>();
+    static {
+        for (int p : PRIMES) {
+            PRIMES_SET.add(p);
+        }
+    }
+    static void checkPrimeFactors(List<Integer> factors){
+        for (int p : factors) {
+            if (!PRIMES_SET.contains(p)) {
+                Assert.fail("Not found in primes list: " + p);
+            }
+        }
+    }
+
+    @Test
+    public void testPrimeFactors() throws Exception {
+        for (int i : BELOW_2) {
+            assertPrimeFactorsException(i, new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL,i,2));
+        }
+        for (int i : NOT_PRIMES) {
+            List<Integer> factors = Primes.primeFactors(i);
+            checkPrimeFactors(factors);
+            int prod = product(factors);
+            Assert.assertEquals(i, prod);
+        }
+        for (int i : PRIMES) {
+            List<Integer> factors = Primes.primeFactors(i);
+            Assert.assertEquals(i, (int)factors.get(0));
+            Assert.assertEquals(1, factors.size());
+        }
+    }
+}


[2/3] commons-numbers git commit: NUMBERS-20: Port classes to new package. Replace [math] exceptions with IllegalArgumentException. Simplify exception detection in unit tests.

Posted by ra...@apache.org.
NUMBERS-20: Port classes to new package.
Replace [math] exceptions with IllegalArgumentException.
Simplify exception detection in unit tests.


Project: http://git-wip-us.apache.org/repos/asf/commons-numbers/repo
Commit: http://git-wip-us.apache.org/repos/asf/commons-numbers/commit/09dc0163
Tree: http://git-wip-us.apache.org/repos/asf/commons-numbers/tree/09dc0163
Diff: http://git-wip-us.apache.org/repos/asf/commons-numbers/diff/09dc0163

Branch: refs/heads/feature-NUMBERS-20
Commit: 09dc0163ea14b0bb247d8a4fd0ea17dac9938fa2
Parents: 996a3a4
Author: Ray DeCampo <ra...@decampo.org>
Authored: Sun Apr 16 13:33:16 2017 -0400
Committer: Ray DeCampo <ra...@decampo.org>
Committed: Thu Apr 20 18:24:13 2017 -0400

----------------------------------------------------------------------
 commons-numbers-primes/pom.xml                  | 45 ++++++++++++++++++++
 .../apache/commons/numbers/primes/Primes.java   | 21 +++++----
 .../commons/numbers/primes/SmallPrimes.java     |  8 ++--
 .../commons/numbers/primes/package-info.java    |  2 +-
 .../commons/numbers/primes/PrimesTest.java      | 35 ++++++---------
 pom.xml                                         |  1 +
 6 files changed, 75 insertions(+), 37 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/09dc0163/commons-numbers-primes/pom.xml
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/pom.xml b/commons-numbers-primes/pom.xml
new file mode 100644
index 0000000..758afa3
--- /dev/null
+++ b/commons-numbers-primes/pom.xml
@@ -0,0 +1,45 @@
+<?xml version="1.0"?>
+<!--
+   Licensed to the Apache Software Foundation (ASF) under one or more
+   contributor license agreements.  See the NOTICE file distributed with
+   this work for additional information regarding copyright ownership.
+   The ASF licenses this file to You under the Apache License, Version 2.0
+   (the "License"); you may not use this file except in compliance with
+   the License.  You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.
+-->
+<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
+         xmlns="http://maven.apache.org/POM/4.0.0"
+         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+  <modelVersion>4.0.0</modelVersion>
+
+  <parent>
+    <groupId>org.apache.commons</groupId>
+    <artifactId>commons-numbers-parent</artifactId>
+    <version>1.0-SNAPSHOT</version>
+  </parent>
+
+  <groupId>org.apache.commons</groupId>
+  <artifactId>commons-numbers-primes</artifactId>
+  <version>1.0-SNAPSHOT</version>
+  <name>Apache Commons Numbers Primes</name>
+
+  <description>Utilities related to prime numbers.</description>
+
+  <properties>
+    <!-- This value must reflect the current name of the base package. -->
+    <commons.osgi.symbolicName>org.apache.commons.numbers.primes</commons.osgi.symbolicName>
+    <!-- OSGi -->
+    <commons.osgi.export>org.apache.commons.numbers.primes</commons.osgi.export>
+    <!-- Workaround to avoid duplicating config files. -->
+    <numbers.parent.dir>${basedir}/..</numbers.parent.dir>
+  </properties>
+
+</project>

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/09dc0163/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/Primes.java
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/Primes.java b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/Primes.java
index db75ccc..b47461e 100644
--- a/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/Primes.java
+++ b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/Primes.java
@@ -14,11 +14,9 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-package org.apache.commons.math4.primes;
-
-import org.apache.commons.math4.exception.MathIllegalArgumentException;
-import org.apache.commons.math4.exception.util.LocalizedFormats;
+package org.apache.commons.numbers.primes;
 
+import java.text.MessageFormat;
 import java.util.List;
 
 
@@ -30,10 +28,13 @@ import java.util.List;
  * <li>factorization</li>
  * </ul>
  *
- * @since 3.2
+ * @since 1.0
  */
 public class Primes {
 
+    /** Exception message format when an argument is too small. */
+    static final String NUMBER_TOO_SMALL = "{0} is smaller than the minimum ({1})";
+
     /**
      * Hide utility class.
      */
@@ -68,11 +69,12 @@ public class Primes {
      *
      * @param n a positive number.
      * @return the smallest prime greater than or equal to n.
-     * @throws MathIllegalArgumentException if n &lt; 0.
+     * @throws IllegalArgumentException if n &lt; 0.
      */
     public static int nextPrime(int n) {
         if (n < 0) {
-            throw new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL, n, 0);
+            throw new IllegalArgumentException(
+                MessageFormat.format(NUMBER_TOO_SMALL, n, 0));
         }
         if (n == 2) {
             return 2;
@@ -112,12 +114,13 @@ public class Primes {
      *
      * @param n number to factorize: must be &ge; 2
      * @return list of prime factors of n
-     * @throws MathIllegalArgumentException if n &lt; 2.
+     * @throws IllegalArgumentException if n &lt; 2.
      */
     public static List<Integer> primeFactors(int n) {
 
         if (n < 2) {
-            throw new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL, n, 2);
+            throw new IllegalArgumentException(
+                MessageFormat.format(NUMBER_TOO_SMALL, n, 2));
         }
         return SmallPrimes.trialDivision(n);
 

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/09dc0163/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/SmallPrimes.java
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/SmallPrimes.java b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/SmallPrimes.java
index 6f329e3..e92b7e6 100644
--- a/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/SmallPrimes.java
+++ b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/SmallPrimes.java
@@ -14,15 +14,13 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-package org.apache.commons.math4.primes;
+package org.apache.commons.numbers.primes;
 
 
 import java.math.BigInteger;
 import java.util.ArrayList;
 import java.util.List;
 
-import org.apache.commons.math4.util.FastMath;
-
 /**
  * Utility methods to work on primes within the <code>int</code> range.
  * @since 3.2
@@ -125,13 +123,13 @@ class SmallPrimes {
      * @return the list of prime factors of n
      */
     public static List<Integer> trialDivision(int n){
-        final List<Integer> factors = new ArrayList<>(32);
+        final List<Integer> factors = new ArrayList<Integer>(32);
         n = smallTrialDivision(n, factors);
         if (1 == n) {
             return factors;
         }
         // here we are sure that n is either a prime or a semi prime
-        final int bound = (int) FastMath.sqrt(n);
+        final int bound = (int) Math.sqrt(n);
         boundedTrialDivision(n, bound, factors);
         return factors;
     }

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/09dc0163/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/package-info.java
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/package-info.java b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/package-info.java
index 076ec31..9330b83 100644
--- a/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/package-info.java
+++ b/commons-numbers-primes/src/main/java/org/apache/commons/numbers/primes/package-info.java
@@ -17,4 +17,4 @@
 /**
  * Methods related to prime numbers like primality test, factor decomposition.
  */
-package org.apache.commons.math4.primes;
+package org.apache.commons.numbers.primes;

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/09dc0163/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/PrimesTest.java
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/PrimesTest.java b/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/PrimesTest.java
index 831a86e..983dd11 100644
--- a/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/PrimesTest.java
+++ b/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/PrimesTest.java
@@ -14,16 +14,13 @@
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */
-package org.apache.commons.math4.primes;
+package org.apache.commons.numbers.primes;
 
 
+import java.text.MessageFormat;
 import java.util.HashSet;
 import java.util.List;
 
-import org.apache.commons.math4.exception.MathIllegalArgumentException;
-import org.apache.commons.math4.exception.util.LocalizedFormats;
-import org.apache.commons.math4.primes.Primes;
-import org.apache.commons.math4.primes.SmallPrimes;
 import org.junit.Assert;
 import org.junit.Test;
 
@@ -60,26 +57,20 @@ public class PrimesTest {
     public static final int[] BELOW_2 = {
             Integer.MIN_VALUE,-1,0,1};
 
-    void assertPrimeFactorsException(int n, Throwable expected) {
+    void assertPrimeFactorsException(int n, String expected) {
         try {
             Primes.primeFactors(n);
             Assert.fail("Exception not thrown");
-        } catch (Throwable e) {
-            Assert.assertEquals(expected.getClass(), e.getClass());
-            if (expected.getMessage() != null) {
-                Assert.assertEquals(expected.getMessage(), e.getMessage());
-            }
+        } catch (IllegalArgumentException e) {
+            Assert.assertEquals(expected, e.getMessage());
         }
     }
-    void assertNextPrimeException(int n, Throwable expected){
+    void assertNextPrimeException(int n, String expected){
         try {
             Primes.nextPrime(n);
             Assert.fail("Exception not thrown");
-        } catch(Throwable e) {
-            Assert.assertEquals(expected.getClass(), e.getClass());
-            if (expected.getMessage() != null) {
-                Assert.assertEquals(expected.getMessage(), e.getMessage());
-            }
+        } catch(IllegalArgumentException e) {
+            Assert.assertEquals(expected, e.getMessage());
         }
     }
 
@@ -108,9 +99,9 @@ public class PrimesTest {
         Assert.assertEquals(Integer.MAX_VALUE, Primes.nextPrime(Integer.MAX_VALUE - 1));
         Assert.assertEquals(Integer.MAX_VALUE, Primes.nextPrime(Integer.MAX_VALUE));
 
-        assertNextPrimeException(Integer.MIN_VALUE, new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL,Integer.MIN_VALUE,0));
-        assertNextPrimeException(-1, new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL,-1,0));
-        assertNextPrimeException(-13, new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL,-13,0));
+        assertNextPrimeException(Integer.MIN_VALUE, MessageFormat.format(Primes.NUMBER_TOO_SMALL,Integer.MIN_VALUE,0));
+        assertNextPrimeException(-1, MessageFormat.format(Primes.NUMBER_TOO_SMALL,-1,0));
+        assertNextPrimeException(-13, MessageFormat.format(Primes.NUMBER_TOO_SMALL,-13,0));
     }
 
     @Test
@@ -140,7 +131,7 @@ public class PrimesTest {
         }
         return out;
     }
-    static final HashSet<Integer> PRIMES_SET = new HashSet<>();
+    static final HashSet<Integer> PRIMES_SET = new HashSet<Integer>();
     static {
         for (int p : PRIMES) {
             PRIMES_SET.add(p);
@@ -157,7 +148,7 @@ public class PrimesTest {
     @Test
     public void testPrimeFactors() throws Exception {
         for (int i : BELOW_2) {
-            assertPrimeFactorsException(i, new MathIllegalArgumentException(LocalizedFormats.NUMBER_TOO_SMALL,i,2));
+            assertPrimeFactorsException(i, MessageFormat.format(Primes.NUMBER_TOO_SMALL,i,2));
         }
         for (int i : NOT_PRIMES) {
             List<Integer> factors = Primes.primeFactors(i);

http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/09dc0163/pom.xml
----------------------------------------------------------------------
diff --git a/pom.xml b/pom.xml
index 4485994..5403e59 100644
--- a/pom.xml
+++ b/pom.xml
@@ -560,6 +560,7 @@
   <modules>
     <module>commons-numbers-core</module>
     <module>commons-numbers-complex</module>
+    <module>commons-numbers-primes</module>
     <module>commons-numbers-quaternion</module>
     <module>commons-numbers-fraction</module>
     <!-- <module>commons-numbers-continuedfraction</module> -->


[3/3] commons-numbers git commit: NUMBERS-20: Add unit tests for SmallPrimes.

Posted by ra...@apache.org.
NUMBERS-20: Add unit tests for SmallPrimes.


Project: http://git-wip-us.apache.org/repos/asf/commons-numbers/repo
Commit: http://git-wip-us.apache.org/repos/asf/commons-numbers/commit/9e54e498
Tree: http://git-wip-us.apache.org/repos/asf/commons-numbers/tree/9e54e498
Diff: http://git-wip-us.apache.org/repos/asf/commons-numbers/diff/9e54e498

Branch: refs/heads/feature-NUMBERS-20
Commit: 9e54e498d16400fdfcf7930ea4f60c42a9f10c85
Parents: 09dc016
Author: Ray DeCampo <ra...@decampo.org>
Authored: Thu Apr 20 18:25:10 2017 -0400
Committer: Ray DeCampo <ra...@decampo.org>
Committed: Thu Apr 20 18:25:10 2017 -0400

----------------------------------------------------------------------
 .../commons/numbers/primes/SmallPrimesTest.java | 143 +++++++++++++++++++
 1 file changed, 143 insertions(+)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/commons-numbers/blob/9e54e498/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/SmallPrimesTest.java
----------------------------------------------------------------------
diff --git a/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/SmallPrimesTest.java b/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/SmallPrimesTest.java
new file mode 100644
index 0000000..4aa784b
--- /dev/null
+++ b/commons-numbers-primes/src/test/java/org/apache/commons/numbers/primes/SmallPrimesTest.java
@@ -0,0 +1,143 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.commons.numbers.primes;
+
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Collections;
+import java.util.List;
+import org.junit.Assert;
+import org.junit.Test;
+
+public class SmallPrimesTest {
+
+    // Primes larger than the small PRIMES array in SmallPrimes
+    private static final int[] LARGE_PRIME = {3673, 3677};
+
+    @Test
+    public void smallTrialDivision_smallComposite() {
+        final List<Integer> factors = new ArrayList<Integer>();
+        final int result = SmallPrimes.smallTrialDivision(3*7*23, factors);
+        Assert.assertEquals(1, result);
+        Assert.assertEquals(Arrays.asList(3, 7, 23), factors);
+    }
+
+    @Test
+    public void smallTrialDivision_repeatedFactors() {
+        final List<Integer> factors = new ArrayList<Integer>();
+        final int result = SmallPrimes.smallTrialDivision(2*2*3*3*3, factors);
+        Assert.assertEquals(1, result);
+        Assert.assertEquals(Arrays.asList(2, 2, 3, 3, 3), factors);
+    }
+
+    @Test
+    public void smallTrialDivision_oneFactor() {
+        final List<Integer> factors = new ArrayList<Integer>();
+        final int result = SmallPrimes.smallTrialDivision(59, factors);
+        Assert.assertEquals(1, result);
+        Assert.assertEquals(Collections.singletonList(59), factors);
+    }
+
+    @Test
+    public void smallTrialDivision_BoundaryPrimes() {
+        final List<Integer> factors = new ArrayList<Integer>();
+        final int penultimatePrime = SmallPrimes.PRIMES[SmallPrimes.PRIMES.length-2];
+        final int result = SmallPrimes.smallTrialDivision(penultimatePrime*SmallPrimes.PRIMES_LAST, factors);
+        Assert.assertEquals(1, result);
+        Assert.assertEquals(Arrays.asList(penultimatePrime, SmallPrimes.PRIMES_LAST), factors);
+    }
+
+    @Test
+    public void smallTrialDivision_largeComposite() {
+        final List<Integer> factors = new ArrayList<Integer>();
+        final int result = SmallPrimes.smallTrialDivision(2*5*LARGE_PRIME[0], factors);
+        Assert.assertEquals(LARGE_PRIME[0], result);
+        Assert.assertEquals(Arrays.asList(2, 5), factors);
+    }
+
+    @Test
+    public void smallTrialDivision_noSmallPrimeFactors() {
+        final List<Integer> factors = new ArrayList<Integer>();
+        final int result = SmallPrimes.smallTrialDivision(LARGE_PRIME[0]*LARGE_PRIME[1], factors);
+        Assert.assertEquals(LARGE_PRIME[0]*LARGE_PRIME[1], result);
+        Assert.assertEquals(Collections.<Integer>emptyList(), factors);
+    }
+    
+    @Test
+    public void boundedTrialDivision_twoDifferentFactors() {
+        final List<Integer> factors = new ArrayList<Integer>();
+        final int result = SmallPrimes.boundedTrialDivision(LARGE_PRIME[0]*LARGE_PRIME[1], Integer.MAX_VALUE, factors);
+        Assert.assertEquals(LARGE_PRIME[1], result);
+        Assert.assertEquals(Arrays.asList(LARGE_PRIME[0], LARGE_PRIME[1]), factors);
+    }
+
+    @Test
+    public void boundedTrialDivision_square() {
+        final List<Integer> factors = new ArrayList<Integer>();
+        final int result = SmallPrimes.boundedTrialDivision(LARGE_PRIME[0]*LARGE_PRIME[0], Integer.MAX_VALUE, factors);
+        Assert.assertEquals(LARGE_PRIME[0], result);
+        Assert.assertEquals(Arrays.asList(LARGE_PRIME[0], LARGE_PRIME[0]), factors);
+    }
+
+    @Test
+    public void trialDivision_smallComposite() {
+        final List<Integer> factors = SmallPrimes.trialDivision(5*11*29*103);
+        Assert.assertEquals(Arrays.asList(5, 11, 29, 103), factors);
+    }
+
+    @Test
+    public void trialDivision_repeatedFactors() {
+        final List<Integer> factors = SmallPrimes.trialDivision(2*2*2*2*5*5);
+        Assert.assertEquals(Arrays.asList(2, 2, 2, 2, 5, 5), factors);
+    }
+
+    @Test
+    public void trialDivision_oneSmallFactor() {
+        final List<Integer> factors = SmallPrimes.trialDivision(101);
+        Assert.assertEquals(Collections.singletonList(101), factors);
+    }
+
+    @Test
+    public void trialDivision_largeComposite() {
+        final List<Integer> factors = SmallPrimes.trialDivision(2*3*LARGE_PRIME[0]);
+        Assert.assertEquals(Arrays.asList(2, 3, LARGE_PRIME[0]), factors);
+    }
+
+    @Test
+    public void trialDivision_veryLargeComposite() {
+        final List<Integer> factors = SmallPrimes.trialDivision(2*LARGE_PRIME[0]*LARGE_PRIME[1]);
+        Assert.assertEquals(Arrays.asList(2, LARGE_PRIME[0], LARGE_PRIME[1]), factors);
+    }
+
+    @Test
+    public void millerRabinPrimeTest_primes() {
+        for (final int n : PrimesTest.PRIMES) {
+            if (n % 2 == 1) {
+                Assert.assertTrue(SmallPrimes.millerRabinPrimeTest(n));
+            }
+        }
+    }
+
+    @Test
+    public void millerRabinPrimeTest_composites() {
+        for (final int n : PrimesTest.NOT_PRIMES) {
+            if (n %2 == 1) {
+                Assert.assertFalse(SmallPrimes.millerRabinPrimeTest(n));
+            }
+        }
+    }
+}