RE: code value for vocabulary in dic-lookup-fast

["Finan, Sean" <Se...@childrens.harvard.edu>]

Hi Harpreet,

I don't know if this has yet been answered (I'm still finding vacation-time emails), but the Snomed-ct, Rx-norm, etc. codes were removed from the -fast dictionary for speed.  Basically, any single UMLS Cui can have multiple different snomed-ct codes (for instance), and adding extra rows per-code leads to a lot of waste.  A post- Cui assignment step could be performed to assign non-unique snomed-ct codes (for instance) to discovered unique Cuis.  I am actually (slowly) conceptualizing an annotator that does just that - mapping Cuis to other source codes.  It would be an optional annotator, lean and fast.  No promise on a date for startup code in sandbox.

Sean

> -----Original Message-----
> From: Harpreet Khanduja [mailto:hsk5004@rit.edu]
> Sent: Friday, July 25, 2014 2:33 PM
> To: dev@ctakes.apache.org
> Subject: code value for vocabulary in dic-lookup-fast
> 
> Hello,
> 
> I am using ctakes-dictionary-lookup-fast to annotation purposes.
> But, there is no value for
> "code"  attribute like it was there when I used ctakes-dictionary-lookup.
> 
> Is there any way I can find out the code attribute value using ctakes-dictionary-
> lookup-fast?
> 
> 
> Thank you so much for the help,
> 
> Harpreet

Re: code value for vocabulary in dic-lookup-fast

[Harpreet Khanduja <hs...@rit.edu>]

Hello Sean,
    Thank you so much for your reply.
    This is very grateful of you to send me the files.
    It will save me so much time.
    I really appreciate your help.

Regards,
Harpreet



On Wed, Aug 6, 2014 at 9:42 AM, Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:

> Hi Harpreet,
>
> I don't know if this has yet been answered (I'm still finding
> vacation-time emails), but the Snomed-ct, Rx-norm, etc. codes were removed
> from the -fast dictionary for speed.  Basically, any single UMLS Cui can
> have multiple different snomed-ct codes (for instance), and adding extra
> rows per-code leads to a lot of waste.  A post- Cui assignment step could
> be performed to assign non-unique snomed-ct codes (for instance) to
> discovered unique Cuis.  I am actually (slowly) conceptualizing an
> annotator that does just that - mapping Cuis to other source codes.  It
> would be an optional annotator, lean and fast.  No promise on a date for
> startup code in sandbox.
>
> Sean
>
> > -----Original Message-----
> > From: Harpreet Khanduja [mailto:hsk5004@rit.edu]
> > Sent: Friday, July 25, 2014 2:33 PM
> > To: dev@ctakes.apache.org
> > Subject: code value for vocabulary in dic-lookup-fast
> >
> > Hello,
> >
> > I am using ctakes-dictionary-lookup-fast to annotation purposes.
> > But, there is no value for
> > "code"  attribute like it was there when I used ctakes-dictionary-lookup.
> >
> > Is there any way I can find out the code attribute value using
> ctakes-dictionary-
> > lookup-fast?
> >
> >
> > Thank you so much for the help,
> >
> > Harpreet
>