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Posted to dev@ctakes.apache.org by ken cottrell <co...@gmail.com> on 2018/07/23 20:59:30 UTC
UMLS credentials don't seem to let me run UMLS process XML files
I've received my UMLS username and password and can login to UMLS site, but
my credentials don't seem to be working properly on my local laptop cTAKES.
I can load this file ok - no errors: - AggregatePlaintextProcessor.xml
But I get the attached errors on my command line, and popup window when I
try to load either of these:
- AggregatePlaintextFastUMLSPRocessor.xml
- AggregatePlaintextUMLSPRocessor.xml
I assume this password is ok? I've tried both command line and entered into
runctakesCVD.sh file (see attachments):
username = kencottrell
password = Cbug,2018
ERROR
--------------
23 Jul 2018 15:36:01 INFO UmlsUserApprover - Checking UMLS Account at
https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser for user kencottrell:
23 Jul 2018 15:36:02 ERROR UmlsUserApprover - java.lang.RuntimeException:
Unexpected error: java.security.InvalidAlgorithmParameterException: the
trustAnchors parameter must be non-empty
Ken Cottrell
(mobile) 214-546-5100
(private email) cottrell.ken@gmail.com
Re: UMLS credentials don't seem to let me run UMLS process XML files
Posted by James Masanz <ma...@gmail.com>.
I suspect the UMLS team means that the (
https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser ) URL is not valid for
a person to type into a browser. Without having seen their full email,
that's the best I can surmise.
When I look at the URL that they mentioned that has documentation (
https://uts.nlm.nih.gov/help/license/validateumlsuserhelp.html ), that page
does state that the ( https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser
) URL is the correct one for *applications* to use.
Have you tried to verify your user ID and password by logging into the
following:
https://utslogin.nlm.nih.gov/cas/login
On Tue, Jul 24, 2018 at 5:06 AM, Jain, Ritika <ri...@philips.com>
wrote:
> Ken,
>
> The end point in the ctakes 4.0 for CVD is not a valid end point, I wrote
> to UMLS to confirm and this is what they have replied to me
>
>
> That endpoint (documented here:
> https://uts.nlm.nih.gov/help/license/validateumlsuserhelp.html
> is not meant for end users, so it will not work with your license code and
> username.
>
> Ritika
>
>
>
> -----Original Message-----
> From: Gandhi Rajan Natarajan <Ga...@arisglobal.com>
> Sent: Tuesday, July 24, 2018 12:52 PM
> To: dev@ctakes.apache.org
> Subject: RE: UMLS credentials don't seem to let me run UMLS process XML
> files
>
> Hi Ken,
>
> Similar issues are creeping up very frequently off late. Though I’m not
> sure what exactly is the issue here, in one of the recent mail chains
> Dmitriy has mentioned the following:
>
> We had similar issues back in February (you can search the email archive).
> I was under impression that this happened when multiple instances of cTAKES
> were run on the same machine under different user names. A couple of times
> we were able to fix this problem by cleaning out a bunch of files from /tmp
> (such as conn.xml), but that “fix” stopped working at some problem. We
> weren’t able to determine the root cause of this problem...
>
> Ultimately, we replaced CentOS with Ubuntu on that machine and the problem
> went away for good.
>
>
> From: ken cottrell <co...@gmail.com>
> Sent: Tuesday, July 24, 2018 2:30 AM
> To: dev@ctakes.apache.org
> Subject: UMLS credentials don't seem to let me run UMLS process XML files
>
> I've received my UMLS username and password and can login to UMLS site,
> but my credentials don't seem to be working properly on my local laptop
> cTAKES.
>
> I can load this file ok - no errors: - AggregatePlaintextProcessor.xml
>
> But I get the attached errors on my command line, and popup window when I
> try to load either of these:
>
> - AggregatePlaintextFastUMLSPRocessor.xml
> - AggregatePlaintextUMLSPRocessor.xml
>
> I assume this password is ok? I've tried both command line and entered
> into runctakesCVD.sh file (see attachments):
>
> username = kencottrell
> password = Cbug,2018
>
> ERROR
> --------------
> 23 Jul 2018 15:36:01 INFO UmlsUserApprover - Checking UMLS Account at
> https://emea01.safelinks.protection.outlook.com/?url=
> https%3A%2F%2Futs-ws.nlm.nih.gov%2Frestful%2FisValidUMLSUser&data=02%
> 7C01%7C%7Cc2e907802f4c4402983f08d5f136216a%7C1a407a2d76754d178692b3ac2853
> 06e4%7C0%7C0%7C636680137172903280&sdata=4TmaTpCPAGMGi9spkIFUevoueS5uJT
> t8BSWq2ccbDts%3D&reserved=0 for user kencottrell:
>
> 23 Jul 2018 15:36:02 ERROR UmlsUserApprover - java.lang.RuntimeException:
> Unexpected error: java.security.InvalidAlgorithmParameterException: the
> trustAnchors parameter must be non-empty
>
> Ken Cottrell
> (mobile) 214-546-5100
> (private email) cottrell.ken@gmail.com<ma...@gmail.com>
> This email and any files transmitted with it are confidential and intended
> solely for the use of the individual or entity to whom they are addressed.
> If you are not the named addressee you should not disseminate, distribute
> or copy this e-mail. Please notify the sender or system manager by email
> immediately if you have received this e-mail by mistake and delete this
> e-mail from your system. If you are not the intended recipient you are
> notified that disclosing, copying, distributing or taking any action in
> reliance on the contents of this information is strictly prohibited and
> against the law.
>
> ________________________________
> The information contained in this message may be confidential and legally
> protected under applicable law. The message is intended solely for the
> addressee(s). If you are not the intended recipient, you are hereby
> notified that any use, forwarding, dissemination, or reproduction of this
> message is strictly prohibited and may be unlawful. If you are not the
> intended recipient, please contact the sender by return e-mail and destroy
> all copies of the original message.
>
RE: UMLS credentials don't seem to let me run UMLS process XML files
Posted by "Jain, Ritika" <ri...@philips.com>.
Ken,
The end point in the ctakes 4.0 for CVD is not a valid end point, I wrote to UMLS to confirm and this is what they have replied to me
That endpoint (documented here:
https://uts.nlm.nih.gov/help/license/validateumlsuserhelp.html
is not meant for end users, so it will not work with your license code and username.
Ritika
-----Original Message-----
From: Gandhi Rajan Natarajan <Ga...@arisglobal.com>
Sent: Tuesday, July 24, 2018 12:52 PM
To: dev@ctakes.apache.org
Subject: RE: UMLS credentials don't seem to let me run UMLS process XML files
Hi Ken,
Similar issues are creeping up very frequently off late. Though I’m not sure what exactly is the issue here, in one of the recent mail chains Dmitriy has mentioned the following:
We had similar issues back in February (you can search the email archive). I was under impression that this happened when multiple instances of cTAKES were run on the same machine under different user names. A couple of times we were able to fix this problem by cleaning out a bunch of files from /tmp (such as conn.xml), but that “fix” stopped working at some problem. We weren’t able to determine the root cause of this problem...
Ultimately, we replaced CentOS with Ubuntu on that machine and the problem went away for good.
From: ken cottrell <co...@gmail.com>
Sent: Tuesday, July 24, 2018 2:30 AM
To: dev@ctakes.apache.org
Subject: UMLS credentials don't seem to let me run UMLS process XML files
I've received my UMLS username and password and can login to UMLS site, but my credentials don't seem to be working properly on my local laptop cTAKES.
I can load this file ok - no errors: - AggregatePlaintextProcessor.xml
But I get the attached errors on my command line, and popup window when I try to load either of these:
- AggregatePlaintextFastUMLSPRocessor.xml
- AggregatePlaintextUMLSPRocessor.xml
I assume this password is ok? I've tried both command line and entered into runctakesCVD.sh file (see attachments):
username = kencottrell
password = Cbug,2018
ERROR
--------------
23 Jul 2018 15:36:01 INFO UmlsUserApprover - Checking UMLS Account at https://emea01.safelinks.protection.outlook.com/?url=https%3A%2F%2Futs-ws.nlm.nih.gov%2Frestful%2FisValidUMLSUser&data=02%7C01%7C%7Cc2e907802f4c4402983f08d5f136216a%7C1a407a2d76754d178692b3ac285306e4%7C0%7C0%7C636680137172903280&sdata=4TmaTpCPAGMGi9spkIFUevoueS5uJTt8BSWq2ccbDts%3D&reserved=0 for user kencottrell:
23 Jul 2018 15:36:02 ERROR UmlsUserApprover - java.lang.RuntimeException: Unexpected error: java.security.InvalidAlgorithmParameterException: the trustAnchors parameter must be non-empty
Ken Cottrell
(mobile) 214-546-5100
(private email) cottrell.ken@gmail.com<ma...@gmail.com>
This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you are not the named addressee you should not disseminate, distribute or copy this e-mail. Please notify the sender or system manager by email immediately if you have received this e-mail by mistake and delete this e-mail from your system. If you are not the intended recipient you are notified that disclosing, copying, distributing or taking any action in reliance on the contents of this information is strictly prohibited and against the law.
________________________________
The information contained in this message may be confidential and legally protected under applicable law. The message is intended solely for the addressee(s). If you are not the intended recipient, you are hereby notified that any use, forwarding, dissemination, or reproduction of this message is strictly prohibited and may be unlawful. If you are not the intended recipient, please contact the sender by return e-mail and destroy all copies of the original message.
RE: UMLS credentials don't seem to let me run UMLS process XML files
Posted by Gandhi Rajan Natarajan <Ga...@arisglobal.com>.
Hi Ken,
Similar issues are creeping up very frequently off late. Though I’m not sure what exactly is the issue here, in one of the recent mail chains Dmitriy has mentioned the following:
We had similar issues back in February (you can search the email archive). I was under impression
that this happened when multiple instances of cTAKES were run on the same machine under different
user names. A couple of times we were able to fix this problem by cleaning out a bunch of
files from /tmp (such as conn.xml), but that “fix” stopped working at some problem. We
weren’t able to determine the root cause of this problem...
Ultimately, we replaced CentOS with Ubuntu on that machine and the problem went away for good.
From: ken cottrell <co...@gmail.com>
Sent: Tuesday, July 24, 2018 2:30 AM
To: dev@ctakes.apache.org
Subject: UMLS credentials don't seem to let me run UMLS process XML files
I've received my UMLS username and password and can login to UMLS site, but my credentials don't seem to be working properly on my local laptop cTAKES.
I can load this file ok - no errors: - AggregatePlaintextProcessor.xml
But I get the attached errors on my command line, and popup window when I try to load either of these:
- AggregatePlaintextFastUMLSPRocessor.xml
- AggregatePlaintextUMLSPRocessor.xml
I assume this password is ok? I've tried both command line and entered into runctakesCVD.sh file (see attachments):
username = kencottrell
password = Cbug,2018
ERROR
--------------
23 Jul 2018 15:36:01 INFO UmlsUserApprover - Checking UMLS Account at https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser for user kencottrell:
23 Jul 2018 15:36:02 ERROR UmlsUserApprover - java.lang.RuntimeException: Unexpected error: java.security.InvalidAlgorithmParameterException: the trustAnchors parameter must be non-empty
Ken Cottrell
(mobile) 214-546-5100
(private email) cottrell.ken@gmail.com<ma...@gmail.com>
This email and any files transmitted with it are confidential and intended solely for the use of the individual or entity to whom they are addressed. If you are not the named addressee you should not disseminate, distribute or copy this e-mail. Please notify the sender or system manager by email immediately if you have received this e-mail by mistake and delete this e-mail from your system. If you are not the intended recipient you are notified that disclosing, copying, distributing or taking any action in reliance on the contents of this information is strictly prohibited and against the law.