[jira] [Comment Edited] (KUDU-3371) Use RocksDB to store LBM metadata

["Wei-Chiu Chuang (Jira)" <ji...@apache.org>]

    [ https://issues.apache.org/jira/browse/KUDU-3371?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17542556#comment-17542556 ] 

Wei-Chiu Chuang edited comment on KUDU-3371 at 5/26/22 4:31 PM:
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We use RocksDB to store metadata in Apache Ozone. Feel free to check out the code and see how we use it.

Using protobuf to serialize metadata and put into RocksDB is a straightforward approach (it's how we do it in Ozone). However, it comes with serialization/deserialization cost. Another approach is FlatBuffers which appears to have less serialization overhead.

Introducing RocksDB means another big dependency and the team will have to invest time to optimize for it.

Just my two cents. Thanks.


was (Author: jojochuang):
We use RocksDB to store metadata in Apache Ozone. Feel free to check out the code and see how we use it.

Using protobuf to serialize metadata and put into RocksDB is a straightforward approach. It comes with serialization/deserialization cost. Another approach is FlatBuffers which seems to cause less serialization overhead.

Introducing RocksDB means another big dependency and the team will have to invest time to optimize for it.

Just my two cents. Thanks.

> Use RocksDB to store LBM metadata
> ---------------------------------
>
>                 Key: KUDU-3371
>                 URL: https://issues.apache.org/jira/browse/KUDU-3371
>             Project: Kudu
>          Issue Type: Improvement
>          Components: fs
>            Reporter: Yingchun Lai
>            Priority: Major
>
> h1. Motivation
> The current LBM container use separate .data and .metadata files. The .data file store the real user data, we can use hole punching to reduce disk space. While the metadata use write protobuf serialized string to a file, in append only mode. Each protobuf object is a struct of BlockRecordPB:
>  
> {code:java}
> message BlockRecordPB {
>   required BlockIdPB block_id = 1;  // int64
>   required BlockRecordType op_type = 2;  // CREATE or DELETE
>   required uint64 timestamp_us = 3;
>   optional int64 offset = 4; // Required for CREATE.
>   optional int64 length = 5; // Required for CREATE.
> } {code}
> That means each object is either type of CREATE or DELETE. To mark a 'block' as deleted, there will be 2 objects in the metadata, one is CREATE type and the other is DELETE type.
> There are some weak points of current LBM metadata storage mechanism:
> h2. 1. Disk space amplification
> The metadata live blocks rate may be very low, the worst case is there is only 1 alive block (suppose it hasn't reach the runtime compact threshold), all the other thousands of blocks are dead (i.e. in pair of CREATE-DELETE).
> So the disk space amplification is very serious.
> h2. 2. Long time bootstrap
> In Kudu server bootstrap stage, it have to replay all the metadata files, to find out the alive blocks. In the worst case, we may replayed thousands of blocks in metadata, but find only a very few blocks are alive.
> It may waste much time in almost all cases, since the Kudu cluster in production environment always run without bootstrap with several months, the LBM may be very loose.
> h2. 3. Metadada compaction
> To resolve the issues above, there is a metadata compaction mechanism in LBM, both at runtime and bootstrap stage.
> The one at runtime will lock the container, and it's synchronous.
> The one in bootstrap stage is synchronous too, and may make the bootstrap time longer.
> h1. Optimization by using RocksDB
> h2. Storage design
>  * RocksDB instance: one RocksDB instance per data directory.
>  * Key: <container_id>.<block_id>
>  * Value: the same as before, i.e. the serialized protobuf string, and only store for CREATE entries.
>  * Put/Delete: put value to rocksdb when create block, delete it from rocksdb when delete block
>  * Scan: happened only in bootstrap stage to retrieve all blocks
>  * DeleteRange: happened only when invalidate a container
> h2. Advantages
>  # Disk space amplification: There is still disk space amplification problem. But we can tune RocksDB to reach a balanced point, I trust in most cases, RocksDB is better than append only file.
>  # Bootstrap time: since there are only valid blocks left in rocksdb, so it maybe much faster than before.
>  # metadata compaction: we can leave it to rocksdb to do this work, of course tuning needed.
> h2. test & benchmark
> I'm trying to use RocksDB to store LBM container metadata recently, finished most of work now, and did some benchmark. It show that the fs module block read/write/delete performance is similar to or little worse than the old implemention, the bootstrap time may reduce several times.
> I not sure if it is worth to continue the work, or anybody know if there is any discussion on this topic ever.



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