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Posted to dev@jena.apache.org by "Andy Seaborne (JIRA)" <ji...@apache.org> on 2015/09/15 14:44:45 UTC
[jira] [Resolved] (JENA-1025) org.apache.jena.atlas.AtlasException:
SortedDataBag is closed, no operations can be performed on it
[ https://issues.apache.org/jira/browse/JENA-1025?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Andy Seaborne resolved JENA-1025.
---------------------------------
Resolution: Cannot Reproduce
Assignee: Andy Seaborne
Fix Version/s: Fuseki 2.3.1
> org.apache.jena.atlas.AtlasException: SortedDataBag is closed, no operations can be performed on it
> ---------------------------------------------------------------------------------------------------
>
> Key: JENA-1025
> URL: https://issues.apache.org/jira/browse/JENA-1025
> Project: Apache Jena
> Issue Type: Bug
> Components: Fuseki
> Affects Versions: Fuseki 2.3.0
> Environment: java version "1.8.0_60"
> Java(TM) SE Runtime Environment (build 1.8.0_60-b27)
> Java HotSpot(TM) Client VM (build 25.60-b23, mixed mode)
> fuseki-server.bat --update --port=3030 --memTDB --set tdb:unionDefaultG
> raph=true /db
> [2015-09-13 01:15:08] Server INFO Fuseki 2.3.0 2015-07-25T17:11:28+0000
> [2015-09-13 01:15:12] Config INFO FUSEKI_HOME=C:\apache-jena-fuseki-2.3.0\.
> [2015-09-13 01:15:12] Config INFO FUSEKI_BASE=C:\apache-jena-fuseki-2.3.0\run
> [2015-09-13 01:15:12] Servlet INFO Initializing Shiro environment
> [2015-09-13 01:15:12] Config INFO Shiro file: file://C:\apache-jena-fuseki-2.3.0\run\shiro.ini
> [2015-09-13 01:15:14] Config INFO Template file: templates/config-tdb-mem
> [2015-09-13 01:15:14] Config INFO TDB dataset: in-memory
> [2015-09-13 01:15:24] Config INFO Register: /db
> [2015-09-13 01:15:25] Server INFO Started 2015/09/13 01:15:25 JST on port 3030
> Reporter: mw james
> Assignee: Andy Seaborne
> Fix For: Fuseki 2.3.1
>
>
> This issue occurred with 2.3 (1.1 worked with the same dataset just fine).
> {noformat}
> [2015-09-13 01:09:50] Fuseki INFO [2181] Query = PREFIX wiki: <http://example.org/id/> PREFIX
> rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-sche
> ma#> PREFIX owl: <http://www.w3.org/2002/07/owl#> PREFIX swivt: <http://semantic-mediawiki.org/swiv
> t/1.0#> PREFIX property: <http://example.org/id/Property-3A> PREFIX xsd: <http://www.w3.org/2001/XM
> LSchema#> SELECT * WHERE { <http://example.org/id/Berlin/2> swivt:wikiPageSortKey ?s OPTIONAL { <h
> ttp://example.org/id/Berlin/2> swivt:redirectsTo ?r } } LIMIT 1
> [2015-09-13 01:09:50] Fuseki INFO [2181] exec/select
> [2015-09-13 01:09:50] Fuseki INFO [2181] 200 OK (95 ms)
> [2015-09-13 01:09:50] Fuseki INFO [2182] POST http://192.168.1.103:3030/db/update
> [2015-09-13 01:09:50] Fuseki INFO [2182] POST /db :: 'update' :: [application/x-www-form-urlen
> coded charset=UTF-8] ?
> [2015-09-13 01:09:51] Fuseki INFO [2182] 200 OK (324 ms)
> [2015-09-13 01:09:51] Fuseki INFO [2183] POST http://192.168.1.103:3030/db/query
> [2015-09-13 01:09:51] Fuseki INFO [2183] POST /db :: 'query' :: [application/x-www-form-urlenc
> oded charset=UTF-8] ?
> [2015-09-13 01:09:51] Fuseki INFO [2183] Query = PREFIX wiki: <http://example.org/id/> PREFIX
> rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-sche
> ma#> PREFIX owl: <http://www.w3.org/2002/07/owl#> PREFIX swivt: <http://semantic-mediawiki.org/swiv
> t/1.0#> PREFIX property: <http://example.org/id/Property-3A> PREFIX xsd: <http://www.w3.org/2001/XM
> LSchema#> SELECT DISTINCT ?result WHERE { ?result swivt:wikiPageSortKey ?resultsk . { ?result prope
> rty:Has_subobject-23aux ?v1 . ?result property:Has_area ?v2 . } UNION { ?result property:Has_wattage ?v3 . } } ORDER BY ASC(?resultsk) OFFSET 0 LIMIT 51
> [2015-09-13 01:09:53] Fuseki WARN [2183] RC = 500 : SortedDataBag is closed, no operations can
> be performed on it.
> org.apache.jena.atlas.AtlasException: SortedDataBag is closed, no operations can be performed on it
> .
> at org.apache.jena.atlas.data.SortedDataBag.checkClosed(SortedDataBag.java:87)
> at org.apache.jena.atlas.data.SortedDataBag.iterator(SortedDataBag.java:195)
> at org.apache.jena.atlas.data.SortedDataBag.iterator(SortedDataBag.java:189)
> at org.apache.jena.sparql.engine.iterator.QueryIterSort$SortedBindingIterator.initializeIte
> rator(QueryIterSort.java:98)
> at org.apache.jena.atlas.iterator.IteratorDelayedInitialization.init(IteratorDelayedInitial
> ization.java:40)
> at org.apache.jena.atlas.iterator.IteratorDelayedInitialization.hasNext(IteratorDelayedInit
> ialization.java:50)
> at org.apache.jena.sparql.engine.iterator.QueryIterPlainWrapper.hasNextBinding(QueryIterPla
> inWrapper.java:53)
> at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
> 111)
> at org.apache.jena.sparql.engine.iterator.QueryIterConvert.hasNextBinding(QueryIterConvert.
> java:58)
> at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
> 111)
> at org.apache.jena.sparql.engine.iterator.QueryIterDistinct.getInputNextUnseen(QueryIterDis
> tinct.java:104)
> at org.apache.jena.sparql.engine.iterator.QueryIterDistinct.hasNextBinding(QueryIterDistinc
> t.java:70)
> at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
> 111)
> at org.apache.jena.sparql.engine.iterator.QueryIterSlice.hasNextBinding(QueryIterSlice.java
> :76)
> at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
> 111)
> at org.apache.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIterator
> Wrapper.java:39)
> at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
> 111)
> at org.apache.jena.sparql.engine.iterator.QueryIteratorWrapper.hasNextBinding(QueryIterator
> Wrapper.java:39)
> at org.apache.jena.sparql.engine.iterator.QueryIteratorBase.hasNext(QueryIteratorBase.java:
> 111)
> at org.apache.jena.sparql.engine.ResultSetStream.hasNext(ResultSetStream.java:74)
> at org.apache.jena.sparql.engine.ResultSetCheckCondition.hasNext(ResultSetCheckCondition.ja
> va:59)
> at org.apache.jena.fuseki.servlets.SPARQL_Query.executeQuery(SPARQL_Query.java:305)
> at org.apache.jena.fuseki.servlets.SPARQL_Query.execute(SPARQL_Query.java:254)
> at org.apache.jena.fuseki.servlets.SPARQL_Query.executeWithParameter(SPARQL_Query.java:212)
> at org.apache.jena.fuseki.servlets.SPARQL_Query.perform(SPARQL_Query.java:108)
> at org.apache.jena.fuseki.servlets.ActionSPARQL.executeLifecycle(ActionSPARQL.java:132)
> at org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeRequest(SPARQL_UberServlet.jav
> a:330)
> at org.apache.jena.fuseki.servlets.SPARQL_UberServlet.serviceDispatch(SPARQL_UberServlet.ja
> va:294)
> at org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeAction(SPARQL_UberServlet.java
> :255)
> at org.apache.jena.fuseki.servlets.ActionSPARQL.execCommonWorker(ActionSPARQL.java:83)
> at org.apache.jena.fuseki.servlets.ActionBase.doCommon(ActionBase.java:79)
> at org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:71)
> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1632)
> at org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
> at org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
> at org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
> at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125
> )
> at org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
> at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:4
> 49)
> at org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
> at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
> at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
> at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383)
> at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.ja
> va:362)
> at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125
> )
> at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1624)
> at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:550)
> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:568)
> at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:221)
> at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1110)
> at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:479)
> at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:183)
> at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1044)
> at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97)
> at org.eclipse.jetty.server.Server.handle(Server.java:459)
> at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:281)
> at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:232)
> at org.eclipse.jetty.io.AbstractConnection$1.run(AbstractConnection.java:505)
> at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:607)
> at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:536)
> at java.lang.Thread.run(Unknown Source)
> [2015-09-13 01:09:54] Fuseki INFO [2183] 500 SortedDataBag is closed, no operations can be per
> formed on it. (2.973 s)
> {noformat}
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