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Posted to commits@beam.apache.org by mhsaul <gi...@git.apache.org> on 2017/10/11 21:12:40 UTC

[GitHub] beam pull request #3979: [BEAM-2774] Add I/O source to read VCF files

GitHub user mhsaul opened a pull request:

    https://github.com/apache/beam/pull/3979

    [BEAM-2774] Add I/O source to read VCF files

    Added I/O transform, `ReadFromVcf`, to read VCF files into a `PCollection` of `Variant` objects. Modified `TextSource` to be able to process file headers to be used for VCF files.
    
    Design Doc: https://docs.google.com/document/d/1jsdxOPALYYlhnww2NLURS8NKXaFyRSJrcGbEDpY9Lkw/edit
    
    CC: @arostamianfar @chamikaramj @aaltay


You can merge this pull request into a Git repository by running:

    $ git pull https://github.com/mhsaul/beam miles_saul--vsf-io-source

Alternatively you can review and apply these changes as the patch at:

    https://github.com/apache/beam/pull/3979.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

    This closes #3979
    
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commit 3f699fcd286c8509cfc404d7c2bec35fd6342347
Author: Miles Saul <ms...@msaul0.wat.corp.google.com>
Date:   2017-10-11T19:00:03Z

    Added vcf file io source and modified _TextSource to optionally handle headers

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[GitHub] beam pull request #3979: [BEAM-2774] Add I/O source to read VCF files

Posted by asfgit <gi...@git.apache.org>.

Github user asfgit closed the pull request at:

    https://github.com/apache/beam/pull/3979


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