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Posted to commits@taverna.apache.org by bu...@apache.org on 2015/02/04 14:15:45 UTC
svn commit: r938942 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/introduction/taverna-in-use/data-and-text-mining.html
Author: buildbot
Date: Wed Feb 4 13:15:44 2015
New Revision: 938942
Log:
Staging update by buildbot for taverna
Added:
websites/staging/taverna/trunk/content/introduction/taverna-in-use/data-and-text-mining.html
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
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--- websites/staging/taverna/trunk/content/introduction/taverna-in-use/data-and-text-mining.html (added)
+++ websites/staging/taverna/trunk/content/introduction/taverna-in-use/data-and-text-mining.html Wed Feb 4 13:15:44 2015
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+<!DOCTYPE html>
+<html lang="en">
+ <head>
+ <meta charset="utf-8">
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width, initial-scale=1">
+ <title>Apache Taverna - Data and text mining</title>
+
+ <meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
+ <meta property="og:image" content="/img/taverna-logo-145x134.png" />
+
+ <link rel="shortcut icon" href="/favicon.ico">
+ <link rel="icon" type="image/png" sizes="145x134" href="/img/taverna-logo-145x134.png">
+ <link rel="apple-touch-icon" sizes="145x134" href="/img/taverna-logo-145x134.png">
+
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap.min.css">
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap-theme.min.css">
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+
+ <!-- JSON-LD markup for Google Structured Data -->
+
+ <!-- generic JSON-LD for this page -->
+ <script type="application/ld+json">
+ {
+ "@context" : "http://schema.org",
+ "@type" : ["CreativeWork"],
+ "@id": "",
+ "name" : "Data and text mining",
+ "publisher" : {
+ "@type" : "Organization",
+ "url" : "http://www.apache.org/",
+ "name" : "The Apache Software Foundation (ASF)"
+ },
+ "license": {
+ "@type": "CreativeWork",
+ "@id": "http://www.apache.org/licenses/LICENSE-2.0",
+ "url": "http://www.apache.org/licenses/LICENSE-2.0",
+ "name": "Apache License, Version 2.0"
+ }
+ }
+</script>
+
+ </head>
+
+ <body>
+
+ <!-- Static navbar -->
+ <nav class="navbar navbar-default" role="navigation">
+ <div class="container">
+ <div class="navbar-header">
+ <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
+ <span class="sr-only">Toggle navigation</span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ </button>
+ <a class="navbar-brand" href="/"><img src="/img/taverna-logo-145x134.png" alt="">Apache Taverna</a>
+
+ </div>
+ <div id="navbar" class="navbar-collapse collapse">
+ <ul class="nav navbar-nav">
+ <li class="dropdown">
+ <a class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Introduction<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/introduction/">Introduction</a></li>
+ <li><a href="/introduction/taverna-features.html">Taverna features</a></li>
+ <li><a href="/introduction/why-use-workflows.html">Why use workflows?</a></li>
+ <li><a href="/introduction/what-is-in-silico-experimentation.html">What is âin silicoâ experimentation?</a></li>
+ <li><a href="/introduction/what-is-a-workflow-management-system.html">What is a Workflow Management System?</a></li>
+ <li><a href="/introduction/how-can-taverna-help-me.html">How can Taverna help me?</a></li>
+ <li><a href="/introduction/services-in-taverna.html">Services in Taverna</a></li>
+ <li><a href="/introduction/related-projects.html">Related projects</a></li>
+ <li><a href="/introduction/chemistry-web-services.html">Chemistry-web-services</a></li>
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+ </ul>
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+ <li><a href="/download/">Apache Taverna 3.x</a></li>
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+ </ul>
+ </li>
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+ <form >
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+ <!--<input type="submit" id="submit" value="Search">-->
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+ <form class="navbar-form navbar-right" role="search"
+ name="search" id="search" action="http://www.google.com/search" method="get">
+ <input value="taverna.incubator.apache.org" name="sitesearch" type="hidden"/>
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+ </div><!--/.nav-collapse -->
+ </div><!--/.container-->
+ </nav>
+
+
+ <div id="page" class="container">
+ <h1>Data and text mining</h1>
+ <div class="alert alert-info" role="alert"><p><span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span>
+
+Taverna is transitioning to the Apache Incubator.
+This webpage reflects material not yet released under Apache Incubator.
+Instead it shows <a class="alert-link" href="http://www.taverna.org.uk/">taverna2</a> material that is expected to become part of the Apache Incubator project in the future.
+</div>
+
+
+ <div id="content"><p>Taverna is used for the automation of data and text mining by various projects and researchers.<br />
+These include:</p>
+<ul>
+<li><a href="/introduction/related-projects.html#e-lico">e-Lico</a> - building a virtual e-science laboratory for interdisciplinary collaborative research in data mining
+ and data-intensive sciences</li>
+<li><a href="#aid">Adaptive Information Disclosure (AID) workflows</a> - workflows to extract knowledge and data to
+ associate proteins and diseases</li>
+<li><a href="/introduction/taverna-in-use/multimedia.html#course-generator">Course generator</a></a> - workflow to create a course based upon user requirements</li>
+<li><a href="/introduction/related-projects.html#refine">REFINE</a> - representing evidence for interacting network elements</li>
+<li><a href="#open-software-development-workflows">Open software development workflows</a> - modelling the development of open software projects</li>
+<li><a href="/introduction/taverna-in-use/annotation.html#taweka">TaWeka</a> - mining databases for subsequent machine learning</li>
+</ul>
+<p><a name="aid"></a></p>
+<h2 id="aid">AID</h2>
+<p>Taverna is used by researchers at <a href="http://www.mygrid.org.uk/outreach/collaboration/collaboration-with-nbic/">NBIC</a> as an enactment platform for <a href="http://www.adaptivedisclosure.org/aida/workflows">BioAID</a> workflows from
+ the AIDA (Adaptive Information Disclosure Application) toolkit developed by <a href="http://www.vl-e.nl/">VL-e</a>
+ that offers services for knowledge extraction, text mining and knowledge management.</p>
+<p>There is a myExperiment <a href="http://www.myexperiment.org/groups/42">group</a> for AID workflows.</p>
+<h3 id="publications">Publications</h3>
+<p>The <a href="https://www.google.co.uk/url?sa=t&rct=j&q=&esrc=s&source=web&cd=1&cad=rja&uact=8&ved=0CDMQFjAA&url=https%3A%2F%2Fbioinformatics.cs.vt.edu%2F~murali%2Fconference-fayfaars%2F2007-ismb-eccb%2FISMBECCB07%2FDemos%2Froos_20070511110510.pdf&ei=aBrSVPmcJYqS7AarnIG4BA&usg=AFQjCNFxsZFPdqYu7OqkwPd_-KIX4xQXPw&sig2=jqEU3XVUPOOgp0HTNVekxw&bvm=bv.85076809,d.ZGU">presentation</a> <em>My BioAID: personalised text mining with Web services from the AIDA toolbox</em>
+ by Marco Roos describes the use of the AIDA toolkit and Taverna.</p>
+<p><a name="open-software-development-workflows"></a></p>
+<h2 id="open-software-development-workflows">Open software development workflows##</h2>
+<p>Taverna has been used to model the research community developing open source software together with
+ the software itself.
+This work, done by the Free/Libre Open Source Software Research community is described on the <a href="http://floss.syr.edu/">Web site</a>,
+ in particular their <a href="http://floss.syr.edu/papers">publications</a>.</p>
+<p>There is a myExperiment <a href="http://www.myexperiment.org/groups/64">group</a> for researchers studying open source software development.<br />
+The myExperiment group share some of their Taverna <a href="http://www.myexperiment.org/users/384/workflows">workflows</a>.</p></div>
+
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