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Posted to dev@ctakes.apache.org by "Chen, Pei" <Pe...@childrens.harvard.edu> on 2013/06/10 23:01:17 UTC
cTAKES Type system changes- updating regression tests
FYI:
The current regression tests are failing- I think this is expected due to the changes in the TypeSystem:
EntityMention-> SignSymptomMention
If there are no objections, I plan to replace the expected results with whatever the code is generating now.
10 Jun 2013 16:57:25 INFO RegressionPipelineTest - Verifying Test Output: \workspaces\apache-ctakes\trunk\ctakes-regression-test\testdata\expectedoutput\RegressionPipelineCPETest\doc1_07543210_sample_past_smoker.txt.xml
Exception in thread "BaseCPMImpl-Thread" junit.framework.AssertionFailedError: Verifying Test Output: doc1_07543210_sample_past_smoker.txt.xmlorg.custommonkey.xmlunit.Diff
[different] Expected element tag name 'org.apache.ctakes.typesystem.type.textsem.EntityMention' but was 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention' - comparing <org.apache.ctakes.typesystem.type.textsem.EntityMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.EntityM
ention[1] to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]
at junit.framework.Assert.fail(Assert.java:50)
at junit.framework.Assert.assertTrue(Assert.java:20)
at org.apache.ctakes.regression.test.RegressionPipelineTest.compareXMLOutput(RegressionPipelineTest.java:148)
at org.apache.ctakes.regression.test.RegressionPipelineTest$StatusCallbackListenerImpl.collectionProcessComplete(RegressionPipelineTest.java:201)
at org.apache.uima.collection.impl.cpm.BaseCPMImpl.run(BaseCPMImpl.java:538)
Thanks,
Pei
RE: cTAKES Type system changes- updating regression tests
Posted by "Chen, Pei" <Pe...@childrens.harvard.edu>.
Thanks James.
This has been updated in r1491916
It's fairly simple- I just copy and replaced everything in expectedoutput with ctakes-regression-test/testdata/generatedoutput
The regression test suite essentially generates new output into generatedoutput everytime just compares the xml files in those 2 folders.
--Pei
> -----Original Message-----
> From: Masanz, James J. [mailto:Masanz.James@mayo.edu]
> Sent: Monday, June 10, 2013 9:50 PM
> To: 'dev@ctakes.apache.org'
> Subject: RE: cTAKES Type system changes- updating regression tests
>
> That would be great.
>
> That looks like the culprit.
>
> Or I can do it so I learn more about the regression bucket. I probably won't
> have a chance Tuesday but would have time to work on it Wednesday for
> sure.
>
> -- James
>
> -----Original Message-----
> From: dev-return-1675-Masanz.James=mayo.edu@ctakes.apache.org
> [mailto:dev-return-1675-Masanz.James=mayo.edu@ctakes.apache.org] On
> Behalf Of Chen, Pei
> Sent: Monday, June 10, 2013 4:01 PM
> To: dev@ctakes.apache.org
> Subject: cTAKES Type system changes- updating regression tests
>
> FYI:
> The current regression tests are failing- I think this is expected due to the
> changes in the TypeSystem:
> EntityMention-> SignSymptomMention
>
> If there are no objections, I plan to replace the expected results with
> whatever the code is generating now.
>
> 10 Jun 2013 16:57:25 INFO RegressionPipelineTest - Verifying Test Output:
> \workspaces\apache-ctakes\trunk\ctakes-regression-
> test\testdata\expectedoutput\RegressionPipelineCPETest\doc1_07543210_
> sample_past_smoker.txt.xml
> Exception in thread "BaseCPMImpl-Thread"
> junit.framework.AssertionFailedError: Verifying Test Output:
> doc1_07543210_sample_past_smoker.txt.xmlorg.custommonkey.xmlunit.Dif
> f
> [different] Expected element tag name
> 'org.apache.ctakes.typesystem.type.textsem.EntityMention' but was
> 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention' -
> comparing <org.apache.ctakes.typesystem.type.textsem.EntityMention...>
> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.EntityM
> ention[1] to
> <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...> at
> /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention
> [1]
> at junit.framework.Assert.fail(Assert.java:50)
> at junit.framework.Assert.assertTrue(Assert.java:20)
> at
> org.apache.ctakes.regression.test.RegressionPipelineTest.compareXMLOutp
> ut(RegressionPipelineTest.java:148)
> at
> org.apache.ctakes.regression.test.RegressionPipelineTest$StatusCallbackList
> enerImpl.collectionProcessComplete(RegressionPipelineTest.java:201)
> at
> org.apache.uima.collection.impl.cpm.BaseCPMImpl.run(BaseCPMImpl.java:5
> 38)
>
> Thanks,
> Pei
RE: cTAKES Type system changes- updating regression tests
Posted by "Masanz, James J." <Ma...@mayo.edu>.
That would be great.
That looks like the culprit.
Or I can do it so I learn more about the regression bucket. I probably won't have a chance Tuesday but would have time to work on it Wednesday for sure.
-- James
-----Original Message-----
From: dev-return-1675-Masanz.James=mayo.edu@ctakes.apache.org [mailto:dev-return-1675-Masanz.James=mayo.edu@ctakes.apache.org] On Behalf Of Chen, Pei
Sent: Monday, June 10, 2013 4:01 PM
To: dev@ctakes.apache.org
Subject: cTAKES Type system changes- updating regression tests
FYI:
The current regression tests are failing- I think this is expected due to the changes in the TypeSystem:
EntityMention-> SignSymptomMention
If there are no objections, I plan to replace the expected results with whatever the code is generating now.
10 Jun 2013 16:57:25 INFO RegressionPipelineTest - Verifying Test Output: \workspaces\apache-ctakes\trunk\ctakes-regression-test\testdata\expectedoutput\RegressionPipelineCPETest\doc1_07543210_sample_past_smoker.txt.xml
Exception in thread "BaseCPMImpl-Thread" junit.framework.AssertionFailedError: Verifying Test Output: doc1_07543210_sample_past_smoker.txt.xmlorg.custommonkey.xmlunit.Diff
[different] Expected element tag name 'org.apache.ctakes.typesystem.type.textsem.EntityMention' but was 'org.apache.ctakes.typesystem.type.textsem.SignSymptomMention' - comparing <org.apache.ctakes.typesystem.type.textsem.EntityMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.EntityM
ention[1] to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]
at junit.framework.Assert.fail(Assert.java:50)
at junit.framework.Assert.assertTrue(Assert.java:20)
at org.apache.ctakes.regression.test.RegressionPipelineTest.compareXMLOutput(RegressionPipelineTest.java:148)
at org.apache.ctakes.regression.test.RegressionPipelineTest$StatusCallbackListenerImpl.collectionProcessComplete(RegressionPipelineTest.java:201)
at org.apache.uima.collection.impl.cpm.BaseCPMImpl.run(BaseCPMImpl.java:538)
Thanks,
Pei