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Posted to notifications@ctakes.apache.org by "Tomasz Oliwa (JIRA)" <ji...@apache.org> on 2015/07/15 22:59:04 UTC
[jira] [Updated] (CTAKES-370) Include smoking status in clinical
pipeline
[ https://issues.apache.org/jira/browse/CTAKES-370?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Tomasz Oliwa updated CTAKES-370:
--------------------------------
Attachment: AggregatePlaintextFastUMLSProcessor.xml
AggregatePlaintextFastUMLSProcessor.xml with smoking status integrated
> Include smoking status in clinical pipeline
> -------------------------------------------
>
> Key: CTAKES-370
> URL: https://issues.apache.org/jira/browse/CTAKES-370
> Project: cTAKES
> Issue Type: Improvement
> Components: ctakes-clinical-pipeline, ctakes-smoking-status
> Affects Versions: 3.2.2
> Environment: Linux
> Reporter: Tomasz Oliwa
> Priority: Minor
> Attachments: AggregatePlaintextFastUMLSProcessor.xml
>
>
> The smoking status detection can be included in the clinical pipeline.
> Attached is a AggregatePlaintextFastUMLSProcessor.xml that has the clinical pipeline + the smoking status detection integrated.
> Currently cTAKES has smoking status resources that need to have
> their imports adjusted for any smoking status detection to work. As a workaround, in:
> ProductionPostSentenceAggregate_step1.xml
> change:
> <import name="org.apache.ctakes.core.analysis_engine.TokenizerAnnotator"/>
> <import name="org.apache.ctakes.core.analysis_engine.SentenceDetectorAnnotator"/>
> to the absolute or relative path (depends on the installed system, on my machine it is) of these annotators:
> <import location="../../../../../../desc/ctakes-core/desc/analysis_engine/TokenizerAnnotator.xml"/>
> <import location="../../../../../../desc/ctakes-core/desc/analysis_engine/SentenceDetectorAnnotator.xml"/>
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