[jira] [Closed] (CTAKES-484) Unused or out-of-project references

["Sean Finan (Jira)" <ji...@apache.org>]

     [ https://issues.apache.org/jira/browse/CTAKES-484?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Sean Finan closed CTAKES-484.
-----------------------------
      Assignee: Sean Finan  (was: Alex Zbarcea)
    Resolution: Not A Problem

local file references are in training and resource creation one-off scripts. 

They exist for example purposes only, not for re-use.

> Unused or out-of-project references
> -----------------------------------
>
>                 Key: CTAKES-484
>                 URL: https://issues.apache.org/jira/browse/CTAKES-484
>             Project: cTAKES
>          Issue Type: Task
>            Reporter: Alex Zbarcea
>            Assignee: Sean Finan
>            Priority: Trivial
>
> References to resources outside of project:
> {code:java}
> $ grep --include "*.java" -nRI "C:/"
> ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil/GenerateTrainingData.java:231:               String keywordsFile = "C:/cTAKES-1.0.5/smoking status/resources/ss/data/PCS/keywords_PCS_NHGRI.txt";
> ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil/GenerateTrainingData.java:232:               String stopwordsFile = "C:/cTAKES-1.0.5/smoking status/resources/ss/data/PCS/stopwords_PCS.txt";
> ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil/GenerateTrainingData.java:233:               String dataFile = "C:/Temp/SentenceLevelSmokingStatus_PCS.txt";
> ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil/GenerateTrainingData.java:234:               String libsvmDataFile = "C:/Temp/libsvm_data.txt";
> ctakes-assertion/src/main/java/org/apache/ctakes/assertion/cr/MiPACQKnowtatorXMLReader.java:183:          //File tmpFile = new File(textPath); // Note this does not work with something like "file:/C:/usr/data/MiPACQ/1/xml/0054074073-0.xml"
> ctakes-assertion/src/main/java/org/apache/ctakes/assertion/util/AssertionConst.java:33: // Note that on Windows, by default, /sharp-home/assertion/ the same as C:/sharp-home/assertion/
> ctakes-dictionary-lookup/scripts/java/org/apache/ctakes/dictionary/lookup/tools/CreateLuceneIndexForExampleDrugs.java:53:               File indexDir = new File("C:/general_workspace/ctakes-dictionary-lookup/resources/lookup/drug_index");//C:/temp/lucene/" + "drug-index";
> ctakes-dictionary-lookup/scripts/java/org/apache/ctakes/dictionary/lookup/tools/CreateLuceneIndexForSnomedLikeSample.java:65:           File indexDir = new File("C:/temp/lucene/" + "snomed-like_sample"); // lookup by first_word, results contain UMLS CUIs
> ctakes-dictionary-lookup/scripts/java/org/apache/ctakes/dictionary/lookup/tools/CreateLuceneIndexForSnomedLikeSample.java:66:           File indexDir2 = new File("C:/temp/lucene/" + "snomed-like_codes_sample"); // for getting snomed codes for a CUI
> ctakes-ytex-uima/src/main/java/org/apache/ctakes/ytex/tools/DBAnnotationViewerMain.java:181:                            "C:/Program Files/apache-uima"));
> {code}
> {code:java}
> $ grep --include "*.java" -nRI "\"/home"  | sed "s#.*\"\/#\/#g" | sed "s#\".*##g" | sort -u
> /home/dima/i2b2/wiki-index/index_nometa
> /home/dima/sharp/cloud/mipacq/xml/all/
> /home/dima/sharp/cloud/mipacq/xml/dev/
> /home/dima/sharp/cloud/mipacq/xml/test/
> /home/dima/sharp/cloud/mipacq/xml/train/
> /home/dima/sharp/cloud/share/xml/all/
> /home/dima/sharp/cloud/share/xml/dev/
> /home/dima/sharp/cloud/share/xml/test/
> /home/dima/sharp/cloud/share/xml/train/
> /home/dima/sharp/cloud/sharp/xml/all/
> /home/dima/sharp/cloud/sharp/xml/dev/
> /home/dima/sharp/cloud/sharp/xml/test/
> /home/dima/sharp/cloud/sharp/xml/train/
> /home/parent/child/someFile
> /home/parent/child/someFile.jpg
> /home/parent/child/someFile.txt.xmi
> /home/subdir/someFile.bsv
> /home/subdir/someFile.txt
> /home/tmill/Documents/wiki/index_med_5k
> /home/tmill/Documents/wiki/index_nometa
> /home/tmill/Projects/coref/training/
> /home/tmill/Projects/parser/reranker/matrix.txt
> /home/tmill/mnt/prv/data/index_vectors_notext
> /home/tmill/mnt/rc-pub/odie/gold-pairs/
> {code}



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