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Posted to commits@ctakes.apache.org by ja...@apache.org on 2013/08/27 17:55:53 UTC
svn commit: r1517854 - in /ctakes/trunk:
ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/
ctakes-side-effect/desc/analysis_engine/
Author: james-masanz
Date: Tue Aug 27 15:55:52 2013
New Revision: 1517854
URL: http://svn.apache.org/r1517854
Log:
CTAKES-141 - merge r1442300 into trunk
Modified:
ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml
ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml
ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml
ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml
ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml
ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml
ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml
ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml
ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml
ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml
Modified: ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml (original)
+++ ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffect.xml Tue Aug 27 15:55:52 2013
@@ -225,7 +225,7 @@
<properties>
<property key="textMetaFields" value="preferred_designation|other_designation"/>
<property key="maxPermutationLevel" value="5"/>
- <property key="windowAnnotations" value="edu.mayo.bmi.uima.lookup.type.DrugLookupWindowAnnotation"/>
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation"/>
<property key="exclusionTags" value="AUX,AUXD,AUXG,AUXN,AUXP,AUXZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
</properties>
</lookupInitializer>
Modified: ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml (original)
+++ ctakes/trunk/ctakes-side-effect-res/src/main/resources/org/apache/ctakes/sideeffect/lookup/LookupDesc_sideEffectUMLS.xml Tue Aug 27 15:55:52 2013
@@ -226,7 +226,7 @@
<properties>
<property key="textMetaFields" value="preferred_designation|other_designation"/>
<property key="maxPermutationLevel" value="5"/>
- <property key="windowAnnotations" value="edu.mayo.bmi.uima.lookup.type.DrugLookupWindowAnnotation"/>
+ <property key="windowAnnotations" value="org.apache.ctakes.typesystem.type.textspan.DrugLookupWindowAnnotation"/>
<property key="exclusionTags" value="AUX,AUXD,AUXG,AUXN,AUXP,AUXZ,CC,CD,DT,EX,LS,MD,PDT,POS,PP,PP$,RP,TO,WDT,WP,WPS,WRB"/>
</properties>
</lookupInitializer>
Modified: ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml (original)
+++ ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE.xml Tue Aug 27 15:55:52 2013
@@ -86,7 +86,7 @@
<nameValuePair>
<name>ChunkCreatorClass</name>
<value>
- <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+ <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified: ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml (original)
+++ ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregateTAE_UMLS.xml Tue Aug 27 15:55:52 2013
@@ -86,7 +86,7 @@
<nameValuePair>
<name>ChunkCreatorClass</name>
<value>
- <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+ <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified: ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml (original)
+++ ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE.xml Tue Aug 27 15:55:52 2013
@@ -86,7 +86,7 @@
<nameValuePair>
<name>ChunkCreatorClass</name>
<value>
- <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+ <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified: ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml (original)
+++ ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectAggregate_CDA_TAE_UMLS.xml Tue Aug 27 15:55:52 2013
@@ -86,7 +86,7 @@
<nameValuePair>
<name>ChunkCreatorClass</name>
<value>
- <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+ <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified: ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml (original)
+++ ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE.xml Tue Aug 27 15:55:52 2013
@@ -97,7 +97,7 @@
<nameValuePair>
<name>ChunkCreatorClass</name>
<value>
- <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+ <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified: ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml (original)
+++ ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregateTAE_UMLS.xml Tue Aug 27 15:55:52 2013
@@ -97,7 +97,7 @@
<nameValuePair>
<name>ChunkCreatorClass</name>
<value>
- <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+ <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified: ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml (original)
+++ ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml Tue Aug 27 15:55:52 2013
@@ -97,7 +97,7 @@
<nameValuePair>
<name>ChunkCreatorClass</name>
<value>
- <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+ <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
</value>
</nameValuePair>
</configurationParameterSettings>
Modified: ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml?rev=1517854&r1=1517853&r2=1517854&view=diff
==============================================================================
--- ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml (original)
+++ ctakes/trunk/ctakes-side-effect/desc/analysis_engine/SideEffectSentenceAggregate_CDA_TAE_UMLS.xml Tue Aug 27 15:55:52 2013
@@ -97,7 +97,7 @@
<nameValuePair>
<name>ChunkCreatorClass</name>
<value>
- <string>edu.mayo.bmi.uima.chunker.PhraseTypeChunkCreator</string>
+ <string>org.apache.ctakes.chunker.ae.PhraseTypeChunkCreator</string>
</value>
</nameValuePair>
</configurationParameterSettings>