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Posted to commits@ctakes.apache.org by se...@apache.org on 2019/11/30 19:05:57 UTC
svn commit: r1870640 [1/4] - in /ctakes/trunk/ctakes-dockhand: ./ src/
src/main/ src/main/java/ src/main/java/org/ src/main/java/org/apache/
src/main/java/org/apache/ctakes/ src/main/java/org/apache/ctakes/dockhand/
src/main/java/org/apache/ctakes/dock...
Author: seanfinan
Date: Sat Nov 30 19:05:56 2019
New Revision: 1870640
URL: http://svn.apache.org/viewvc?rev=1870640&view=rev
Log:
Simple ctakes installer gui.
Right now it can create a docker rest installation and a local binary installation.
Rest installation needs more testing.
Possible future types are docker binary and local rest.
Installations have user-definable simple common pipelines.
Pipelines can be expanded in the future.
The jar is completely standalone and the sole needed distributable. Double-click the jar to launch the gui.
Added:
ctakes/trunk/ctakes-dockhand/ (with props)
ctakes/trunk/ctakes-dockhand/pom.xml
ctakes/trunk/ctakes-dockhand/src/
ctakes/trunk/ctakes-dockhand/src/main/
ctakes/trunk/ctakes-dockhand/src/main/java/
ctakes/trunk/ctakes-dockhand/src/main/java/org/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/BaseInstaller.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/InstallHelper.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/LocalInstallBuilder.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/MavenHelper.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/RestDockerBuilder.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/DisablerPane.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/MainPanel.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/SinglePackageFabricator.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Feature.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/FeatureComponent.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/GoalPom.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Option.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/Output.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/OutputComponent.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DescriptionStep.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardController.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardStep.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/FeaturesStep.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/InstallTypeStep.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/OutputStep.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/progress/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/progress/NoteMarkupProgressUI.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/progress/NoteProgressDialog.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/progress/ProgressNote.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/AbstractWizardStep.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/ContentsPanel.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/NavigationPanel.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/SummaryStep.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/TocPanel.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/WizardController.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/WizardPanel.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/WizardStep.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/util/
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/util/DialogUtil.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/util/RunnerUtil.java
ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/gui/wizard/util/SystemUtil.java
ctakes/trunk/ctakes-dockhand/src/main/resources/
ctakes/trunk/ctakes-dockhand/src/main/resources/LICENSE
ctakes/trunk/ctakes-dockhand/src/main/resources/NOTICE
ctakes/trunk/ctakes-dockhand/src/main/resources/log4j.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/binary/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/binary/RunPipeline.bat
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/binary/RunPipeline.sh
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/docker/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/docker/Dockerfile
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/attribute_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/build.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/coreference_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/entity_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/relation_coref_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/relation_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/relation_temporal_coreference_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/relation_temporal_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/temporal_coref_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/temporal_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/local/pom/token_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/attribute_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/coreference_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/entity_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/relation_coref_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/relation_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/relation_temporal_coreference_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/relation_temporal_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/temporal_coref_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/temporal_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/goal/rest/pom/token_pom.xml
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/rest/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/dockhand/rest/TinyRestPipeline.piper
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/ctakes_logo.jpg (with props)
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/progress/
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/progress/TextProcess_200g_0.gif (with props)
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/progress/TextProcess_200g_1.gif (with props)
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/progress/TextProcess_200g_2.gif (with props)
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/progress/TextProcess_200g_3.gif (with props)
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/progress/TextProcess_200g_4.gif (with props)
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/progress/TextProcess_200g_5.gif (with props)
ctakes/trunk/ctakes-dockhand/src/main/resources/org/apache/ctakes/image/progress/TextProcess_200g_6.gif (with props)
Propchange: ctakes/trunk/ctakes-dockhand/
------------------------------------------------------------------------------
--- svn:ignore (added)
+++ svn:ignore Sat Nov 30 19:05:56 2019
@@ -0,0 +1 @@
+target
Added: ctakes/trunk/ctakes-dockhand/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/pom.xml?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/pom.xml (added)
+++ ctakes/trunk/ctakes-dockhand/pom.xml Sat Nov 30 19:05:56 2019
@@ -0,0 +1,53 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+ <artifactId>ctakes-dockhand</artifactId>
+ <name>Apache cTAKES Dockhand</name>
+ <parent>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes</artifactId>
+ <version>4.0.1-SNAPSHOT</version>
+ </parent>
+ <dependencies>
+
+ </dependencies>
+ <build>
+ <plugins>
+
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-jar-plugin</artifactId>
+ <version>2.4</version>
+ <configuration>
+ <archive>
+ <manifest>
+ <mainClass>org.apache.ctakes.dockhand.gui.SinglePackageFabricator</mainClass>
+ </manifest>
+ </archive>
+ </configuration>
+ </plugin>
+
+ </plugins>
+ </build>
+</project>
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/BaseInstaller.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/BaseInstaller.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/BaseInstaller.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/BaseInstaller.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,84 @@
+package org.apache.ctakes.dockhand.build;
+
+
+import org.apache.ctakes.gui.wizard.util.DialogUtil;
+import org.apache.ctakes.gui.wizard.util.RunnerUtil;
+import org.apache.ctakes.gui.wizard.util.SystemUtil;
+
+import java.io.*;
+import java.nio.file.Paths;
+import java.util.Collection;
+import java.util.concurrent.Callable;
+
+import static org.apache.ctakes.gui.wizard.util.SystemUtil.NO_FILE;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 11/10/2019
+ */
+final public class BaseInstaller implements Callable<File> {
+
+ static private final String PIPER_NAME = "DockhandPipeline.piper";
+
+ private final String _installType;
+ private final String _sourceDirUrl;
+ private final String _goalPomFile;
+ private final String _piperCommands;
+ private final String[] _extraFiles;
+ private File _installDir;
+
+ public BaseInstaller( final String installType,
+ final String sourceDirUrl,
+ final String goalPomFile,
+ final Collection<String> piperCommands,
+ final String... extraFiles ) {
+ _installType = installType;
+ _sourceDirUrl = sourceDirUrl;
+ _goalPomFile = goalPomFile;
+ _piperCommands = String.join( "\n", piperCommands );
+ _extraFiles = extraFiles;
+ }
+
+
+ public boolean install() {
+ final File installDir = InstallHelper.getInstance().chooseInstallDir();
+ if ( installDir.equals( NO_FILE ) ) {
+ DialogUtil.showInstallCanceled( _installType );
+ return false;
+ }
+ _installDir = installDir;
+
+ RunnerUtil.runWithProgress( "Installing " + _installType + " ...", this );
+ return true;
+ }
+
+ public File call() {
+ final String installPath = _installDir.getAbsolutePath();
+ new File( installPath ).mkdirs();
+
+ final String piperPath = installPath + "/" + PIPER_NAME;
+ try ( Writer writer = new BufferedWriter( new FileWriter( piperPath ) ) ) {
+ writer.write( _piperCommands + "\n" );
+ } catch ( IOException ioE ) {
+ DialogUtil.showError( ioE.getMessage() );
+ }
+ copyToDisk( _sourceDirUrl + "pom/" + _goalPomFile, installPath + "/pom.xml" );
+ copyToDisk( "/log4j.xml", installPath + "/log4j.xml" );
+ copyToDisk( "/LICENSE", installPath + "/LICENSE" );
+ copyToDisk( "/NOTICE", installPath + "/NOTICE" );
+
+ for ( String file : _extraFiles ) {
+ final String name = new File( file ).getName();
+ copyToDisk( file, installPath + "/" + name );
+ }
+
+ return _installDir;
+ }
+
+ private void copyToDisk( final String source, final String filePath ) {
+ SystemUtil.copyToDisk( getClass().getResourceAsStream( source ), Paths.get( filePath ) );
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/InstallHelper.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/InstallHelper.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/InstallHelper.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/InstallHelper.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,40 @@
+package org.apache.ctakes.dockhand.build;
+
+import org.apache.ctakes.gui.wizard.util.DialogUtil;
+
+import java.io.File;
+
+import static org.apache.ctakes.gui.wizard.util.SystemUtil.NO_FILE;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 11/3/2019
+ */
+public enum InstallHelper {
+ INSTANCE;
+
+ static public InstallHelper getInstance() {
+ return INSTANCE;
+ }
+
+
+ private File _installDir = new File( System.getProperty( "user.dir" ) );
+
+ public File getInstallDir() {
+ return _installDir;
+ }
+
+
+ public File chooseInstallDir() {
+ final File installDir = DialogUtil.chooseSaveDir();
+ if ( installDir == null ) {
+ return NO_FILE;
+ }
+ _installDir = installDir;
+ return _installDir;
+ }
+
+
+}
+
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/LocalInstallBuilder.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/LocalInstallBuilder.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/LocalInstallBuilder.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/LocalInstallBuilder.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,71 @@
+package org.apache.ctakes.dockhand.build;
+
+import org.apache.ctakes.dockhand.gui.feature.GoalPom;
+import org.apache.ctakes.dockhand.gui.wizard.DhWizardController;
+import org.apache.ctakes.gui.wizard.util.DialogUtil;
+
+import java.util.Collection;
+
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/26/2019
+ */
+final public class LocalInstallBuilder implements Runnable {
+
+ static private final String INSTALL_TYPE = "Apache cTAKES Local";
+
+ static private final String BINARY_DIR = "/org/apache/ctakes/dockhand/binary/";
+ static private final String SOURCE_URLDIR = "/org/apache/ctakes/dockhand/goal/local/";
+
+
+ private final DhWizardController _wizardController;
+
+ public LocalInstallBuilder( final DhWizardController wizardController ) {
+ _wizardController = wizardController;
+ }
+
+ public void run() {
+ final GoalPom goalPom = _wizardController.getGoalPom();
+ final Collection<String> piperCommands = _wizardController.getPiperCommands();
+
+ final BaseInstaller baseInstaller
+ = new BaseInstaller( INSTALL_TYPE,
+ SOURCE_URLDIR, goalPom.getPomFile(), piperCommands,
+ SOURCE_URLDIR + "pom/build.xml",
+ BINARY_DIR + "RunPipeline.sh",
+ BINARY_DIR + "RunPipeline.bat" );
+
+ final boolean install = baseInstaller.install();
+ if ( !install ) {
+ return;
+ }
+
+ final boolean maven = MavenHelper.getInstance().installMaven();
+ if ( !maven ) {
+ return;
+ }
+
+ final String installPath = InstallHelper.getInstance().getInstallDir().getAbsolutePath();
+ final boolean finished = MavenHelper.getInstance().packagePom( installPath );
+ if ( finished ) {
+ DialogUtil.showInstalledDialog( INSTALL_TYPE, installPath );
+ }
+ }
+
+ // TODO Local src/bin Installation, Local Rest WAR, Installation Docker, Rest Docker.
+
+
+ // TODO For local source installations, instead of doing svn etc., ask which ide.
+ // Then go step-by-step opening the web page with help on that step and indicating svn repo address.
+ // :
+ // Follow the instructions at:
+ // https://www.jetbrains.com/help/idea/checking-out-files-from-subversion-repository.html
+ // using the svn repository
+ // https://svn.apache.org/repos/asf/ctakes/trunk/
+ // or
+ // https://www.eclipse.org/subversive/
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/MavenHelper.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/MavenHelper.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/MavenHelper.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/MavenHelper.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,132 @@
+package org.apache.ctakes.dockhand.build;
+
+import org.apache.ctakes.gui.wizard.util.DialogUtil;
+import org.apache.ctakes.gui.wizard.util.RunnerUtil;
+
+import java.io.File;
+
+import static org.apache.ctakes.gui.wizard.util.SystemUtil.*;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 11/3/2019
+ */
+public enum MavenHelper {
+ INSTANCE;
+
+ static public MavenHelper getInstance() {
+ return INSTANCE;
+ }
+
+ static private final String MAVEN_TITLE = "Apache Maven";
+
+ static private final String MAVEN_URL
+ = "https://repo.maven.apache.org/maven2/org/apache/maven/apache-maven/3.3.1/apache-maven-3.3.1-bin.zip";
+
+
+ private File _mavenDir;
+
+ public File getMavenDir() {
+ if ( _mavenDir != null ) {
+ final String mavenDirPath = _mavenDir.getAbsolutePath();
+ if ( !mavenDirPath.endsWith( File.pathSeparator + "bin" + File.pathSeparator ) ) {
+ return new File( _mavenDir, "apache-maven-3.3.1/bin" );
+ }
+ return _mavenDir;
+ }
+ return NO_FILE;
+ }
+
+
+// public void installMaven() {
+// if ( !getMavenPath().equals( FILE_NOT_FOUND ) ) {
+// return;
+// }
+// DialogUtil.initInstall();
+// final boolean doInstall = DialogUtil.chooseSecondaryInstall( "Apache Maven" );
+// if ( !doInstall ) {
+// DialogUtil.showInstallCanceled( "Apache Maven" );
+// return;
+// }
+// final File mavenInstallDir = MavenHelper.getInstance().chooseMavenDir();
+// if ( mavenInstallDir.equals( NO_FILE ) ) {
+// DialogUtil.showInstallCanceled( "Apache Maven" );
+// return;
+// }
+// // TODO Progress Dialog.
+// try {
+// final File mavenZip = SystemUtil.downloadZipFile( MAVEN_URL );
+// unzipit( mavenZip, mavenInstallDir );
+// } catch ( IOException ioE ) {
+// DialogUtil.showError( ioE.getMessage() );
+// return;
+// }
+// _mavenDir = mavenInstallDir;
+// DialogUtil.showInstallComplete( "Apache Maven", mavenInstallDir.getAbsolutePath() );
+// }
+
+ public boolean installMaven() {
+ if ( !getMavenPath().equals( FILE_NOT_FOUND ) ) {
+ return true;
+ }
+ final boolean doInstall = DialogUtil.chooseSecondaryInstall( MAVEN_TITLE );
+ if ( !doInstall ) {
+ DialogUtil.showCanceledDialog( MAVEN_TITLE );
+ return false;
+ }
+ final File mavenInstallDir = MavenHelper.getInstance().chooseMavenDir();
+ if ( mavenInstallDir.equals( NO_FILE ) ) {
+ DialogUtil.showCanceledDialog( MAVEN_TITLE );
+ return false;
+ }
+ try {
+ final FileDownloader downloader = new FileDownloader( MAVEN_URL );
+ final File mavenZip = RunnerUtil.runWithProgress( "Downloading " + MAVEN_TITLE + " ...", downloader );
+
+ final FileUnzipper unzipper = new FileUnzipper( mavenZip, mavenInstallDir );
+ final File installedDir = RunnerUtil.runWithProgress( "Unzipping " + MAVEN_TITLE + " ...", unzipper );
+ } catch ( Exception e ) {
+ DialogUtil.showError( e.getMessage() );
+ return false;
+ }
+ _mavenDir = mavenInstallDir;
+ DialogUtil.showInstalledDialog( MAVEN_TITLE, mavenInstallDir.getAbsolutePath() );
+ return true;
+ }
+
+
+ public File chooseMavenDir() {
+ final File mavenDir = DialogUtil.chooseSaveDir();
+ if ( mavenDir == null ) {
+ return NO_FILE;
+ }
+ _mavenDir = mavenDir;
+ return _mavenDir;
+ }
+
+
+ static private String getMavenPath() {
+ final String os = System.getProperty( "os.name" );
+ if ( os.toLowerCase().contains( "windows" ) ) {
+ return findExecutableOnPath( "mvn.cmd" );
+ }
+ return findExecutableOnPath( "mvn" );
+ }
+
+
+ public boolean packagePom( final String pomDirectory ) {
+ try {
+ final CommandRunner packager
+ = new CommandRunner( pomDirectory, getMavenDir().getAbsolutePath() + "/mvn package" );
+ final Boolean packaged = RunnerUtil.runWithProgress( "Running " + MAVEN_TITLE + " ...", packager );
+ } catch ( Exception e ) {
+ DialogUtil.showError( e.getMessage() );
+ return false;
+ }
+ return true;
+ }
+
+
+}
+
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/RestDockerBuilder.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/RestDockerBuilder.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/RestDockerBuilder.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/build/RestDockerBuilder.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,54 @@
+package org.apache.ctakes.dockhand.build;
+
+import org.apache.ctakes.dockhand.gui.feature.GoalPom;
+import org.apache.ctakes.dockhand.gui.wizard.DhWizardController;
+import org.apache.ctakes.gui.wizard.util.DialogUtil;
+
+import java.util.Collection;
+
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/26/2019
+ */
+final public class RestDockerBuilder implements Runnable {
+
+ static private final String INSTALL_TYPE = "Apache cTAKES Rest Docker";
+
+ static private final String DOCKER_DIR = "/org/apache/ctakes/dockhand/docker/";
+ static private final String REST_DIR = "/org/apache/ctakes/dockhand/rest/";
+ static private final String SOURCE_URLDIR = "/org/apache/ctakes/dockhand/goal/rest/";
+
+
+ private final DhWizardController _wizardController;
+
+ public RestDockerBuilder( final DhWizardController wizardController ) {
+ _wizardController = wizardController;
+ }
+
+ public void run() {
+ final GoalPom goalPom = _wizardController.getGoalPom();
+ final Collection<String> piperCommands = _wizardController.getPiperCommands();
+
+ final BaseInstaller baseInstaller
+ = new BaseInstaller( INSTALL_TYPE,
+ SOURCE_URLDIR, goalPom.getPomFile(), piperCommands,
+ DOCKER_DIR + "Dockerfile",
+ REST_DIR + "TinyRestPipeline.piper" );
+
+ final boolean finished = baseInstaller.install();
+ if ( finished ) {
+ final String installPath = InstallHelper.getInstance().getInstallDir().getAbsolutePath();
+ DialogUtil.showInstalledDialog( INSTALL_TYPE, installPath );
+ }
+ }
+
+ // TODO Maybe the rest could output html if the css and js are specified in index.jsp ??
+
+ // TODO Local src/bin Installation, Local Rest WAR, Installation Docker, Rest Docker.
+
+ // TODO set the Buildable boolean supplier in wizard controller
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/DisablerPane.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/DisablerPane.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/DisablerPane.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/DisablerPane.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,228 @@
+package org.apache.ctakes.dockhand.gui;
+
+
+import javax.swing.*;
+import java.awt.*;
+import java.awt.event.*;
+import java.util.logging.Logger;
+
+/**
+ * A Panel that makes everything on the GUI "disabled".
+ * Useful when there is a resource-heavy thread running and GUI interaction is undesirable.
+ * <p>
+ * Though I normally wouldn't do so ... this was copied from ctakes-gui.
+ *
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 11/29/2016
+ */
+public final class DisablerPane extends JPanel implements MouseListener,
+ MouseMotionListener,
+ FocusListener {
+
+ static public DisablerPane getInstance() {
+ return InstanceHolder.INSTANCE;
+ }
+
+ static private final class InstanceHolder {
+ static private final DisablerPane INSTANCE = new DisablerPane();
+ }
+
+ static private final Logger LOGGER = Logger.getLogger( "DisablerPane" );
+
+ private JMenuBar _menuBar;
+ private Container _contentPane;
+
+ private boolean _dragging = false;
+ private boolean _needToRedispatch = false;
+
+ private DisablerPane() {
+ addMouseListener( this );
+ addMouseMotionListener( this );
+ addFocusListener( this );
+ setOpaque( false );
+ setVisible( false );
+ }
+
+ /**
+ * The DisablerPane must be initialized before it can be used
+ *
+ * @param frame -
+ */
+ public void initialize( final JFrame frame ) {
+ _menuBar = frame.getJMenuBar();
+ _contentPane = frame.getContentPane();
+ frame.setGlassPane( this );
+ }
+
+ /**
+ * We only need to redispatch if we're not visible, but having full control
+ * over this might prove handy.
+ */
+ public void setNeedToRedispatch( final boolean need ) {
+ _needToRedispatch = need;
+ }
+
+ /**
+ * Paint partially transparent grey over the frame
+ * {@inheritDoc}
+ */
+ @Override
+ protected void paintComponent( final Graphics g ) {
+ if ( !isVisible() ) {
+ return;
+ }
+ g.setColor( new Color( 127, 127, 127, 83 ) );
+ g.fillRect( 0, 0, getWidth(), getHeight() );
+ }
+
+ /**
+ * Blocks input if visible
+ * {@inheritDoc}
+ */
+ @Override
+ public void setVisible( final boolean visible ) {
+ // Make sure we grab the focus so that key events don't go astray.
+ if ( visible ) {
+ requestFocus();
+ }
+ super.setVisible( visible );
+ }
+
+ /**
+ * Once we have focus, keep it if we're visible
+ * {@inheritDoc}
+ */
+ @Override
+ public void focusLost( final FocusEvent event ) {
+ if ( isVisible() ) {
+ requestFocus();
+ }
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public void focusGained( final FocusEvent event ) {
+ }
+
+ /*
+ * (Based on code from the Java Tutorial) We must forward at least the mouse
+ * drags that started with mouse presses over the check box. Otherwise, when
+ * the user presses the check box then drags off, the check box isn't
+ * disarmed -- it keeps its dark gray background or whatever its L&F uses to
+ * indicate that the button is currently being pressed.
+ */
+ @Override
+ public void mouseDragged( final MouseEvent event ) {
+ if ( _needToRedispatch ) {
+ forwardMouseEvent( event );
+ }
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public void mouseMoved( final MouseEvent event ) {
+ if ( _needToRedispatch ) {
+ forwardMouseEvent( event );
+ }
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public void mouseClicked( final MouseEvent event ) {
+ if ( _needToRedispatch ) {
+ forwardMouseEvent( event );
+ }
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public void mouseEntered( final MouseEvent event ) {
+ if ( _needToRedispatch ) {
+ forwardMouseEvent( event );
+ }
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public void mouseExited( final MouseEvent event ) {
+ if ( _needToRedispatch ) {
+ forwardMouseEvent( event );
+ }
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public void mousePressed( final MouseEvent event ) {
+ if ( _needToRedispatch ) {
+ forwardMouseEvent( event );
+ }
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public void mouseReleased( final MouseEvent event ) {
+ if ( _needToRedispatch ) {
+ forwardMouseEvent( event );
+ _dragging = false;
+ }
+ }
+
+ /**
+ * If there is a mouse event, forward to an underlying component
+ *
+ * @param event -
+ */
+ private void forwardMouseEvent( final MouseEvent event ) {
+ if ( _contentPane == null || _menuBar == null ) {
+ LOGGER.severe( "DisablerPane has not been initialized with a Frame" );
+ return;
+ }
+ boolean inMenuBar = false;
+ final Point point = event.getPoint();
+ Component component;
+ Container container = _contentPane;
+ Point containerPoint = SwingUtilities.convertPoint( this, point, _contentPane );
+ final int eventID = event.getID();
+
+ if ( containerPoint.y < 0 ) {
+ inMenuBar = true;
+ container = _menuBar;
+ containerPoint = SwingUtilities.convertPoint( this, point, _menuBar );
+ isDragging( eventID );
+ }
+ component = SwingUtilities.getDeepestComponentAt( container, containerPoint.x, containerPoint.y );
+ if ( component == null ) {
+ return;
+ } else {
+ isDragging( eventID );
+ }
+ if ( inMenuBar || _dragging ) {
+ final Point componentPoint = SwingUtilities.convertPoint( this, point, component );
+ component.dispatchEvent( new MouseEvent( component, eventID, event.getWhen(), event.getModifiers(),
+ componentPoint.x, componentPoint.y, event.getClickCount(), event.isPopupTrigger() ) );
+ }
+ }
+
+ private void isDragging( final int eventID ) {
+ if ( eventID == MouseEvent.MOUSE_PRESSED ) {
+ _dragging = true;
+ }
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/MainPanel.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/MainPanel.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/MainPanel.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/MainPanel.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,36 @@
+package org.apache.ctakes.dockhand.gui;
+
+
+import org.apache.ctakes.dockhand.gui.wizard.*;
+import org.apache.ctakes.gui.wizard.SummaryStep;
+import org.apache.ctakes.gui.wizard.WizardPanel;
+
+import javax.swing.*;
+
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 9/27/2019
+ */
+final public class MainPanel {
+
+
+ private final DhWizardController _wizardController;
+
+
+ public MainPanel( final DhWizardController wizardController ) {
+ _wizardController = wizardController;
+ _wizardController.addStep( new InstallTypeStep( wizardController ) );
+ _wizardController.addStep( new DescriptionStep() );
+ _wizardController.addStep( new FeaturesStep() );
+ _wizardController.addStep( new OutputStep() );
+ _wizardController.addStep( new SummaryStep( wizardController ) );
+ }
+
+ public JComponent createPanel() {
+ return new WizardPanel().createPanel( _wizardController );
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/SinglePackageFabricator.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/SinglePackageFabricator.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/SinglePackageFabricator.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/SinglePackageFabricator.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,68 @@
+package org.apache.ctakes.dockhand.gui;
+
+
+import org.apache.ctakes.dockhand.gui.wizard.DhWizardController;
+
+import javax.swing.*;
+import java.awt.*;
+
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 1/19/2018
+ */
+final public class SinglePackageFabricator {
+
+
+ // TODO : Copy basic elements (name, packaging, war plugin) from entity pom to other poms.
+
+
+ private SinglePackageFabricator() {
+ }
+
+ static private JFrame createFrame() {
+ final JFrame frame = new JFrame( "cTAKES Single Package Fabricator" );
+ frame.setDefaultCloseOperation( WindowConstants.EXIT_ON_CLOSE );
+ // Use 1024 x 768 as the minimum required resolution (XGA)
+ // iPhone 3 : 480 x 320 (3:2, HVGA)
+ // iPhone 4 : 960 x 640 (3:2, unique to Apple)
+ // iPhone 5 : 1136 x 640 (under 16:9, unique to Apple)
+ // iPad 3&4 : 2048 x 1536 (4:3, QXGA)
+ // iPad Mini: 1024 x 768 (4:3, XGA)
+ final Dimension size = new Dimension( 800, 600 );
+ frame.setSize( size );
+ frame.setMinimumSize( size );
+ // TODO - make save/load installation types?
+// final JMenuBar menuBar = new JMenuBar();
+// final JMenu fileMenu = new JMenu( "File" );
+// menuBar.add( fileMenu );
+//
+// frame.setJMenuBar( menuBar );
+ System.setProperty( "apple.laf.useScreenMenuBar", "true" );
+// JFrame.setDefaultLookAndFeelDecorated( true );
+ return frame;
+ }
+
+ static private JComponent createMainPanel() {
+ return new MainPanel( new DhWizardController() ).createPanel();
+ }
+
+
+ public static void main( final String... args ) {
+ try {
+ UIManager.setLookAndFeel( UIManager.getSystemLookAndFeelClassName() );
+ UIManager.getDefaults().put( "SplitPane.border", BorderFactory.createEmptyBorder() );
+ } catch ( ClassNotFoundException | InstantiationException
+ | IllegalAccessException | UnsupportedLookAndFeelException multE ) {
+// LOGGER.severe( multE.getLocalizedMessage() );
+ }
+ final JFrame frame = createFrame();
+ final JComponent mainPanel = createMainPanel();
+ frame.add( mainPanel );
+ frame.pack();
+ frame.setVisible( true );
+ DisablerPane.getInstance().initialize( frame );
+ }
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Feature.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Feature.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Feature.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Feature.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,79 @@
+package org.apache.ctakes.dockhand.gui.feature;
+
+
+import java.util.*;
+
+import static org.apache.ctakes.dockhand.gui.feature.Option.*;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 9/27/2019
+ */
+public enum Feature {
+ SECTIONS( "Sections", "Split Document by Sections.", SIMPLE_SEGMENT, SPLIT_SECTION ),
+ SENTENCES( "Sentences", "Split Document Text by Sentences.", OPEN_NLP_SENTENCE, PROSE_SENTENCE ),
+ PARAGRAPHS( "Paragraphs", "Split Document Text by Paragraphs.", PARAGRAPH ),
+ LISTS( "Lists", "Detect Formatted Lists and Tables.", LIST ),
+ TOKENS( "Tokens", "Detect Word, Number and other distinct Token Types.", TOKEN ),
+ ENTITIES( "Entities", "Normalize Named Entities.", ENTITY ),
+ ATTRIBUTES( "Attributes", "Add Attributes such as Negation to Entities.", ML_ATTRIBUTE ),
+ EVENTS( "Events", "Detect Temporal Events.", EVENT ),
+ TIMES( "Times", "Detect Time and Date Expressions.", TIME ),
+ DOCTIMEREL( "Relative Event Times", "Determine Relation between Temporal Events and the Time at which the Document was Written.", DOC_TIME_REL ),
+ E_T_LINKS( "Event Times", "Determine Relations between Temporal Events and Times.", E_T_LINK ),
+ E_E_LINKS( "Event Relations", "Determine Relations between Temporal Events and other Events.", E_E_LINK ),
+ LOCATIONS( "Locations", "Determine Locations between Entities.", LOCATION ),
+ SEVERITIES( "Severities", "Determine Severity of Entities.", SEVERITY ),
+ COREFERENCES( "Coreferences", "Determine which Entity mentions refer to the same World Entity.", COREFERENT );
+
+ // TODO Giant file Attributes ? Uses Windowed ***
+ // TODO Dictionary : Default, Custom. Allow Custom to either select existing or launch dictionary creator.
+
+ static public final Map<Feature, Collection<Feature>> REQUIREMENTS = new EnumMap<>( Feature.class );
+
+ static {
+ REQUIREMENTS.put( SECTIONS, Collections.emptyList() );
+ REQUIREMENTS.put( SENTENCES, Collections.singleton( SECTIONS ) );
+ REQUIREMENTS.put( PARAGRAPHS, Arrays.asList( SECTIONS, SENTENCES ) );
+ REQUIREMENTS.put( LISTS, Arrays.asList( SECTIONS, SENTENCES ) );
+ REQUIREMENTS.put( TOKENS, Arrays.asList( SECTIONS, SENTENCES ) );
+ REQUIREMENTS.put( ENTITIES, Arrays.asList( SECTIONS, SENTENCES, TOKENS ) );
+ REQUIREMENTS.put( ATTRIBUTES, Arrays.asList( SECTIONS, SENTENCES, TOKENS, ENTITIES ) );
+ REQUIREMENTS.put( LOCATIONS, Arrays.asList( SECTIONS, SENTENCES, TOKENS, ENTITIES ) );
+ REQUIREMENTS.put( SEVERITIES, Arrays.asList( SECTIONS, SENTENCES, TOKENS, ENTITIES ) );
+ REQUIREMENTS.put( EVENTS, Arrays.asList( SECTIONS, SENTENCES, TOKENS, ENTITIES ) );
+ REQUIREMENTS.put( TIMES, Arrays.asList( SECTIONS, SENTENCES, TOKENS, ENTITIES, EVENTS ) );
+ REQUIREMENTS.put( E_T_LINKS, Arrays.asList( SECTIONS, SENTENCES, TOKENS, ENTITIES, EVENTS, TIMES ) );
+ REQUIREMENTS.put( E_E_LINKS, Arrays.asList( SECTIONS, SENTENCES, TOKENS, ENTITIES, EVENTS, TIMES ) );
+ REQUIREMENTS.put( COREFERENCES, Arrays.asList( SECTIONS, SENTENCES, TOKENS, ENTITIES ) );
+ }
+
+
+ private final String _name;
+ private final String _description;
+ private final List<Option> _options;
+
+ Feature( final String name, final String description, final Option... options ) {
+ _name = name;
+ _description = description;
+ _options = Arrays.asList( options );
+ }
+
+ public String getName() {
+ return _name;
+ }
+
+ public String getDescription() {
+ return _description;
+ }
+
+ public List<Option> getOptions() {
+ return _options;
+ }
+
+ public Collection<Feature> getRequirements() {
+ return REQUIREMENTS.getOrDefault( this, Collections.emptyList() );
+ }
+
+}
\ No newline at end of file
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/FeatureComponent.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/FeatureComponent.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/FeatureComponent.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/FeatureComponent.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,84 @@
+package org.apache.ctakes.dockhand.gui.feature;
+
+import org.apache.ctakes.dockhand.gui.wizard.FeaturesStep;
+
+import javax.swing.*;
+import java.awt.*;
+import java.util.EnumMap;
+import java.util.Map;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/8/2019
+ */
+final public class FeatureComponent extends JPanel {
+
+ private final Feature _feature;
+ private final JCheckBox _checkBox;
+ private final Map<Option, JRadioButton> _optionButtons = new EnumMap<>( Option.class );
+
+
+ public FeatureComponent( final FeaturesStep.FeatureCheckController controller, final Feature feature ) {
+ super( new BorderLayout() );
+ setBackground( Color.WHITE );
+ _feature = feature;
+ _checkBox = new JCheckBox( feature.getName() );
+ _checkBox.setBackground( Color.WHITE );
+ _checkBox.setToolTipText( feature.getDescription() );
+ add( _checkBox, BorderLayout.NORTH );
+ final java.util.List<Option> options = feature.getOptions();
+ if ( options.size() > 1 ) {
+ final JLabel spacer = new JLabel( " " );
+ spacer.setMinimumSize( new Dimension( 100, 10 ) );
+ spacer.setSize( new Dimension( 100, 10 ) );
+ add( spacer, BorderLayout.WEST );
+ final JPanel optionPanel = new JPanel( new GridLayout( options.size(), 1 ) );
+ final ButtonGroup optionGroup = new ButtonGroup();
+ for ( Option option : options ) {
+ final JRadioButton radioButton = new JRadioButton( option.getName() );
+ radioButton.setBackground( Color.WHITE );
+ radioButton.setToolTipText( option.getDescription() );
+ optionGroup.add( radioButton );
+ optionPanel.add( radioButton );
+ _optionButtons.put( option, radioButton );
+ }
+ add( optionPanel, BorderLayout.CENTER );
+ _optionButtons.get( options.get( 0 ) ).setSelected( true );
+ if ( options.size() == 1 ) {
+ _optionButtons.get( options.get( 0 ) ).setEnabled( false );
+ }
+ }
+ controller.addFeature( feature, this );
+ _checkBox.addActionListener( controller );
+ }
+
+ public Feature getFeature() {
+ return _feature;
+ }
+
+ public void setSelected( final boolean selected ) {
+ _checkBox.setSelected( selected );
+ }
+
+ public boolean isSelected() {
+ return _checkBox.isSelected();
+ }
+
+ public void setEnabled( final boolean enable ) {
+ _checkBox.setEnabled( enable );
+ _optionButtons.values().forEach( b -> b.setEnabled( enable ) );
+ }
+
+ public Option getSelectedOption() {
+ if ( _feature.getOptions().size() == 1 ) {
+ return _feature.getOptions().get( 0 );
+ }
+ return _optionButtons.entrySet().stream()
+ .filter( e -> e.getValue().isSelected() )
+ .map( Map.Entry::getKey )
+ .findAny()
+ .orElse( null );
+ }
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/GoalPom.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/GoalPom.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/GoalPom.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/GoalPom.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,64 @@
+package org.apache.ctakes.dockhand.gui.feature;
+
+import java.util.Arrays;
+import java.util.Collection;
+
+import static org.apache.ctakes.dockhand.gui.feature.Feature.*;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 9/27/2019
+ */
+public enum GoalPom {
+ CORE( "token", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS ),
+ LOOKUP( "entity", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS, ENTITIES ),
+ ASSERTION( "attribute", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS, ENTITIES, ATTRIBUTES ),
+ RELATION( "relation", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS, ENTITIES, ATTRIBUTES, LOCATIONS, SEVERITIES ),
+ TEMPORAL( "temporal", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS, ENTITIES, ATTRIBUTES, LOCATIONS, SEVERITIES,
+ EVENTS, TIMES, DOCTIMEREL, E_T_LINKS, E_E_LINKS ),
+ COREFERENCE( "coreference", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS, ENTITIES, ATTRIBUTES, COREFERENCES ),
+ RELATION_COREF( "relation_coref", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS, ENTITIES, ATTRIBUTES, LOCATIONS,
+ SEVERITIES, COREFERENCES ),
+ RELATION_TEMPORAL( "relation_temporal", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS, ENTITIES, ATTRIBUTES, LOCATIONS,
+ SEVERITIES, COREFERENCES ),
+ TEMPORAL_COREF( "temporal_coref", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS, ENTITIES, ATTRIBUTES,
+ EVENTS, TIMES, DOCTIMEREL, E_T_LINKS, E_E_LINKS, COREFERENCES ),
+ RELATION_TEMPORAL_COREF( "relation_temporal_coref", 10, SECTIONS, SENTENCES, PARAGRAPHS, LISTS, TOKENS, ENTITIES, ATTRIBUTES,
+ LOCATIONS, SEVERITIES, EVENTS, TIMES, DOCTIMEREL, E_T_LINKS, E_E_LINKS, COREFERENCES );
+
+ private final String _goal;
+ private final int _mb;
+ private final Feature[] _layersHandled;
+
+ GoalPom( final String goal, final int mb, final Feature... layersHandled ) {
+ _goal = goal;
+ _mb = mb;
+ _layersHandled = layersHandled;
+ }
+
+ public String getPomFile() {
+ return _goal + "_pom.xml";
+ }
+
+ public int getMegaBytes() {
+ return _mb;
+ }
+
+ public Collection<Feature> getLayersHandled() {
+ return Arrays.asList( _layersHandled );
+ }
+
+ static public GoalPom getAppropriatePom( final Collection<Feature> features ) {
+ GoalPom simplestPom = GoalPom.CORE;
+ for ( GoalPom goalPom : values() ) {
+ if ( goalPom.getLayersHandled().containsAll( features ) ) {
+ simplestPom = goalPom;
+ break;
+ }
+ }
+ return simplestPom;
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Option.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Option.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Option.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/feature/Option.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,191 @@
+package org.apache.ctakes.dockhand.gui.feature;
+
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Collection;
+import java.util.List;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 9/27/2019
+ */
+public enum Option {
+ SIMPLE_SEGMENT( "Single Section",
+ "Create a single Section that covers the entire document.",
+ "add SimpleSegmentAnnotator" ),
+
+ SPLIT_SECTION( "Multiple Sections",
+ "Create multiple Sections based upon discovered Section Headers.",
+ "add BsvRegexSectionizer" ),
+
+ VALID_SECTION( "Only Valid Sections",
+ "Filter Sections based upon discovered Section Headers.",
+ "add SectionFilter" ),
+
+
+ OPEN_NLP_SENTENCE( "Simple Sentences",
+ "Create Sentences relying upon End of Line characters.",
+ "add SentenceDetector" ),
+
+ PROSE_SENTENCE( "Prose Sentences",
+ "Create Sentences when End of Line characters may not indicate sentence boundaries.",
+ "add SentenceDetectorAnnotatorBIO" //,
+// "add EolSentenceFixer"
+ ),
+
+
+ PARAGRAPH( "Paragraphs",
+ "Create Paragraphs based upon Whitespace.",
+ "add ParagraphAnnotator",
+ "add ParagraphSentenceFixer" ),
+
+
+ LIST( "Lists",
+ "Create Lists based upon formatted Sections.",
+ "add ListAnnotator",
+// "add ListParagraphFixer",
+ "add ListSentenceFixer" ),
+
+
+ TOKEN( "Tokens",
+ "Create Word and other Penn TreeBank Tokens.",
+ "add TokenizerAnnotatorPTB" ),
+
+
+ ENTITY( "Entities",
+ "Create Named Entites based upon Dictionary Lookup.",
+ "add ContextDependentTokenizerAnnotator",
+ "addDescription POSTagger",
+ "add Chunker",
+ "addDescription adjuster.ChunkAdjuster NP,NP 1",
+ "addDescription adjuster.ChunkAdjuster NP,PP,NP 2",
+ "// path to the xml file containing information for dictionary lookup configuration.",
+// "cli LookupXml=l",
+ "// umls credentials",
+ "cli umlsUser=user",
+ "cli umlsPass=pass",
+ "add DefaultJCasTermAnnotator" ),
+
+// CUSTOM_ENTITY( "Custom Entities",
+// "Create Custom Named Entites based upon Dictionary Lookup.",
+// "add ContextDependentTokenizerAnnotator",
+// "addDescription POSTagger",
+// "add Chunker",
+// "addDescription adjuster.ChunkAdjuster NP,NP 1",
+// "addDescription adjuster.ChunkAdjuster NP,PP,NP 2",
+// "add DefaultJCasTermAnnotator " + someSpecifiedDictionaryConfigurationXml ),
+
+
+ ML_ATTRIBUTE( "ML Attributes",
+ "Assign Negation, Uncertainty, Historic, Generic, Subject using Machine Learning generated models.",
+ "addDescription ClearNLPDependencyParserAE",
+ "addLogged ClearNLPSemanticRoleLabelerAE",
+ "package org.apache.ctakes.assertion.medfacts.cleartk",
+ "addDescription PolarityCleartkAnalysisEngine",
+ "addDescription UncertaintyCleartkAnalysisEngine",
+ "addDescription HistoryCleartkAnalysisEngine",
+ "addDescription ConditionalCleartkAnalysisEngine",
+ "addDescription GenericCleartkAnalysisEngine",
+ "addDescription SubjectCleartkAnalysisEngine",
+ "add SubjectSectionFixer" ),
+
+// RULE_ATTRIBUTE( "RULE Attributes",
+// "Assign Negation, Uncertainty, Historic, Generic, Subject using Machine Learning generated models.",
+// "load AssertionSubPipe" ),
+
+
+ LOCATION( "Locations",
+ "Connect Entity Locations based upon a Machine Learning Model.",
+ "addLogged ModifierExtractorAnnotator classifierJarPath=/org/apache/ctakes/relationextractor/models/modifier_extractor/model.jar",
+ "addLogged LocationOfRelationExtractorAnnotator classifierJarPath=/org/apache/ctakes/relationextractor/models/location_of/model.jar" ),
+
+
+ SEVERITY( "Severities",
+ "Connect Entity Severities based upon a Machine Learning Model.",
+ "addLogged ModifierExtractorAnnotator classifierJarPath=/org/apache/ctakes/relationextractor/models/modifier_extractor/model.jar",
+ "addLogged DegreeOfRelationExtractorAnnotator classifierJarPath=/org/apache/ctakes/relationextractor/models/degree_of/model.jar" ),
+
+
+ EVENT( "Events",
+ "Create Temporal Events based upon a Machine Learning Model.",
+ "addDescription EventAnnotator" ),
+
+ TIME( "Times",
+ "Create Time Mentions based upon a Machine Learning Model.",
+ "add BackwardsTimeAnnotator classifierJarPath=/org/apache/ctakes/temporal/ae/timeannotator/model.jar" ),
+
+ DOC_TIME_REL( "Relative Event Times",
+ "Assign Event Occurrence Relative to Document Creation based upon a Machine Learning Model.",
+ "add DocTimeRelAnnotator classifierJarPath=/org/apache/ctakes/temporal/ae/doctimerel/model.jar" ),
+
+ E_T_LINK( "Event Times",
+ "Assign Event Occurrence Relative to Times based upon a Machine Learning Model.",
+ "add EventTimeRelationAnnotator classifierJarPath=/org/apache/ctakes/temporal/ae/eventtime/model.jar" ),
+
+ E_E_LINK( "Relative Event Timing",
+ "Assign Event Occurrence Relative to other Events based upon a Machine Learning Model.",
+ "add EventEventRelationAnnotator classifierJarPath=/org/apache/ctakes/temporal/ae/eventevent/model.jar" ),
+
+
+ COREFERENT( "Coreferences",
+ "Assign Coreferent Entities based upon a Machine Learning Model.",
+ "add ConstituencyParser",
+ "add DeterministicMarkableAnnotator",
+ "addDescription MarkableSalienceAnnotator /org/apache/ctakes/temporal/ae/salience/model.jar",
+ "addDescription MentionClusterCoreferenceAnnotator /org/apache/ctakes/coreference/models/mention-cluster/model.jar" );
+
+ private final String _name;
+ private final String _description;
+ private final String[] _piperLines;
+
+ Option( final String name, final String description, final String... piperLines ) {
+ _name = name;
+ _description = description;
+ _piperLines = piperLines;
+ }
+
+ public String getName() {
+ return _name;
+ }
+
+ public String getDescription() {
+ return _description;
+ }
+
+ // TODO make some sort of "enabled" list, so that a piper command is only added if previous piper commands exist.
+ public enum PiperLineRequirements {
+ LIST_PARAGRAPH_FIXER( "add ListParagraphFixer", "add ParagraphAnnotator", "add ListAnnotator" ),
+ SECTION_FILTER( "add SectionFilter", "add BsvRegexSectionizer" ),
+ SUBJECT_SECTION_FIXER( "add SubjectSectionFixer", "add BsvRegexSectionizer" ),
+ LIST_SENTENCE_FIXER( "add ListSentenceFixer", "add SentenceDetectorAnnotatorBIO", "add ListAnnotator" ),
+ PARAGRAPH_SENTENCE_FIXER( "add ParagraphSentenceFixer", "add SentenceDetectorAnnotatorBIO", "add ParagraphAnnotator" );
+
+ private final String _addable;
+ private final String[] _requirements;
+
+ PiperLineRequirements( final String piperAddable, final String... piperRequirements ) {
+ _addable = piperAddable;
+ _requirements = piperRequirements;
+ }
+
+ static public boolean hasRequirements( final String piperLine, final Collection<String> previousLines ) {
+ for ( PiperLineRequirements value : values() ) {
+ if ( value._addable.equals( piperLine ) ) {
+ return previousLines.containsAll( Arrays.asList( value._requirements ) );
+ }
+ }
+ return true;
+ }
+ }
+
+
+ public List<String> getPiperLines() {
+ final List<String> piperLines = new ArrayList<>();
+ piperLines.add( "" );
+ piperLines.add( "// " + _description );
+ piperLines.addAll( Arrays.asList( _piperLines ) );
+ return piperLines;
+ }
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/Output.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/Output.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/Output.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/Output.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,63 @@
+package org.apache.ctakes.dockhand.gui.output;
+
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.List;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 11/1/2019
+ */
+public enum Output {
+ FHIR( "FHIR",
+ "Fast Healthcare Interoperability Resources.",
+ "package org.apache.ctakes.fhir.cc",
+ "add FhirJsonFileWriter SubDirectory=FHIR" ),
+ TEXT( "Text",
+ "Text of the note with CUI, semantic group, POS marked.",
+ "add pretty.plaintext.PrettyTextWriterFit SubDirectory=TEXT" ),
+ PROPERTIES( "Properties",
+ "List of the note sentences with entities and relations.",
+ "add property.plaintext.PropertyTextWriterFit SubDirectory=PROP" ),
+ HTML( "HTML",
+ "Web Page of the note with visual information.",
+ "add pretty.html.HtmlTextWriter SubDirectory=HTML" ),
+ XMI( "XMI",
+ "UIMA XML. Extremely verbose.",
+ "add FileTreeXmiWriter SubDirectory=XMI" ),
+ CUI_LIST( "CUI List",
+ "List of CUIs in the note.",
+ "add CuiLookupLister SubDirectory=CUI" ),
+ FINISHED( "Run Summary",
+ "Summary Information Log after run completion.",
+ "addLast util.FinishedLogger" );
+
+ private final String _name;
+ private final String _description;
+ private final String[] _piperLines;
+
+ Output( final String name, final String description, final String... piperLines ) {
+ _name = name;
+ _description = description;
+ _piperLines = piperLines;
+ }
+
+ public String getName() {
+ return _name;
+ }
+
+ public String getDescription() {
+ return _description;
+ }
+
+
+ public List<String> getPiperLines() {
+ final List<String> piperLines = new ArrayList<>();
+ piperLines.add( "" );
+ piperLines.add( "// " + _description );
+ piperLines.addAll( Arrays.asList( _piperLines ) );
+ return piperLines;
+ }
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/OutputComponent.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/OutputComponent.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/OutputComponent.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/output/OutputComponent.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,45 @@
+package org.apache.ctakes.dockhand.gui.output;
+
+
+import javax.swing.*;
+import java.awt.*;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/8/2019
+ */
+final public class OutputComponent extends JPanel {
+
+ private final Output _output;
+ private final JCheckBox _checkBox;
+
+
+ public OutputComponent( final Output output ) {
+ super( new BorderLayout() );
+ setBackground( Color.WHITE );
+ _output = output;
+ _checkBox = new JCheckBox( output.getName() );
+ _checkBox.setBackground( Color.WHITE );
+ _checkBox.setToolTipText( output.getDescription() );
+ add( _checkBox, BorderLayout.NORTH );
+ }
+
+ public Output getOutput() {
+ return _output;
+ }
+
+ public void setSelected( final boolean selected ) {
+ _checkBox.setSelected( selected );
+ }
+
+ public boolean isSelected() {
+ return _checkBox.isSelected();
+ }
+
+ public void setEnabled( final boolean enable ) {
+ _checkBox.setEnabled( enable );
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DescriptionStep.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DescriptionStep.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DescriptionStep.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DescriptionStep.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,85 @@
+package org.apache.ctakes.dockhand.gui.wizard;
+
+
+import org.apache.ctakes.gui.wizard.AbstractWizardStep;
+
+import javax.swing.*;
+import javax.swing.border.CompoundBorder;
+import javax.swing.border.EmptyBorder;
+import javax.swing.border.LineBorder;
+import java.awt.*;
+import java.util.Arrays;
+import java.util.Collection;
+import java.util.Collections;
+import java.util.function.Function;
+import java.util.stream.Collectors;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/9/2019
+ */
+final public class DescriptionStep extends AbstractWizardStep implements DhWizardStep {
+
+
+ static private final String TYPE_DESCRIPTION = "Type the pipeline description.";
+
+ private JTextArea _textArea;
+
+ public DescriptionStep() {
+ super( "Pipeline Description", "Type a Description for your Pipeline." );
+ }
+
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ protected JComponent createPanel() {
+ _textArea = new JTextArea( 0, 60 );
+ _textArea.setBorder( new CompoundBorder( new LineBorder( Color.LIGHT_GRAY, 2, true ),
+ new EmptyBorder( 10, 10, 10, 10 ) ) );
+ _textArea.setText( TYPE_DESCRIPTION );
+ final JPanel panel = new JPanel( new BorderLayout() );
+ panel.add( _textArea, BorderLayout.CENTER );
+ return wrapInScrollPane( panel );
+ }
+
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public Collection<String> getPiperCommands() {
+ if ( _textArea == null ) {
+ return Collections.emptyList();
+ }
+ final String description = _textArea.getText();
+ if ( description.trim().isEmpty() ) {
+ return Collections.emptyList();
+ }
+
+ final String[] lines = description.split( "\\r?\\n" );
+
+ final Function<String, String> ensureComment
+ = s -> (s.startsWith( "//" ) || s.startsWith( "#" )) ? s : "// " + s;
+
+ return Arrays.stream( lines )
+ .map( ensureComment )
+ .collect( Collectors.toList() );
+ }
+
+
+ public String getSummaryInfo() {
+ if ( _textArea == null ) {
+ return "";
+ }
+ final String text = _textArea.getText();
+ if ( text.equals( TYPE_DESCRIPTION ) ) {
+ return "";
+ }
+ return "<HTML>" + text.replace( "\n", "<BR>" ) + "</HTML>";
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardController.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardController.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardController.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardController.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,61 @@
+package org.apache.ctakes.dockhand.gui.wizard;
+
+import org.apache.ctakes.dockhand.gui.feature.GoalPom;
+import org.apache.ctakes.gui.wizard.WizardController;
+import org.apache.ctakes.gui.wizard.WizardStep;
+
+import java.net.InetAddress;
+import java.net.UnknownHostException;
+import java.text.DateFormat;
+import java.text.SimpleDateFormat;
+import java.util.ArrayList;
+import java.util.Collection;
+import java.util.Date;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/14/2019
+ */
+final public class DhWizardController extends WizardController {
+
+
+ public GoalPom getGoalPom() {
+ return getWizardSteps().stream()
+ .filter( s -> s instanceof FeaturesStep )
+ .findAny()
+ .map( s -> (FeaturesStep)s )
+ .map( FeaturesStep::getSelectedFeatures )
+ .map( GoalPom::getAppropriatePom )
+ .get();
+ }
+
+
+ private String createHeader() {
+ final DateFormat dateFormatter = new SimpleDateFormat( "yyyy-MM-dd hh:mm:ss" );
+ final String date = dateFormatter.format( new Date() );
+ String hostname;
+ try {
+ hostname = InetAddress.getLocalHost().getHostName();
+ } catch ( UnknownHostException uhE ) {
+ hostname = "UnknownHost";
+ }
+ final String userName = System.getProperty( "user.name" );
+ return "// Piper File created " + date + " by " + userName + " on " + hostname;
+ }
+
+
+ public Collection<String> getPiperCommands() {
+ final Collection<String> piperCommands = new ArrayList<>();
+ piperCommands.add( createHeader() );
+ for ( WizardStep wizardStep : getWizardSteps() ) {
+ if ( wizardStep instanceof DhWizardStep ) {
+ piperCommands.add( "" );
+ piperCommands.addAll( ((DhWizardStep)wizardStep).getPiperCommands() );
+ }
+ }
+ return piperCommands;
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardStep.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardStep.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardStep.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/DhWizardStep.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,21 @@
+package org.apache.ctakes.dockhand.gui.wizard;
+
+import org.apache.ctakes.gui.wizard.WizardStep;
+
+import java.util.Collection;
+import java.util.Collections;
+
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/11/2019
+ */
+public interface DhWizardStep extends WizardStep {
+
+ default Collection<String> getPiperCommands() {
+ return Collections.emptyList();
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/FeaturesStep.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/FeaturesStep.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/FeaturesStep.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/FeaturesStep.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,141 @@
+package org.apache.ctakes.dockhand.gui.wizard;
+
+import org.apache.ctakes.dockhand.gui.feature.Feature;
+import org.apache.ctakes.dockhand.gui.feature.FeatureComponent;
+import org.apache.ctakes.dockhand.gui.feature.Option;
+import org.apache.ctakes.gui.wizard.AbstractWizardStep;
+
+import javax.swing.*;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.*;
+import java.util.stream.Collectors;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/9/2019
+ */
+final public class FeaturesStep extends AbstractWizardStep implements DhWizardStep {
+
+
+ private final Map<Feature, FeatureComponent> _featureComponents = new EnumMap<>( Feature.class );
+
+
+ public FeaturesStep() {
+ super( "Pipeline Features",
+ "Select the pipeline Features." );
+ }
+
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ protected JComponent createPanel() {
+ final JComponent panel = new JPanel();
+ panel.setLayout( new BoxLayout( panel, BoxLayout.Y_AXIS ) );
+ final FeatureCheckController featureCheckController = new FeatureCheckController();
+ for ( Feature feature : Feature.values() ) {
+ final FeatureComponent featureComponent = new FeatureComponent( featureCheckController, feature );
+ _featureComponents.put( feature, featureComponent );
+ panel.add( featureComponent );
+ }
+
+ // Sections are always required
+ _featureComponents.get( Feature.SECTIONS ).setSelected( true );
+
+ return wrapInScrollPane( panel );
+ }
+
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public Collection<String> getPiperCommands() {
+ if ( _featureComponents.isEmpty() ) {
+ return Collections.emptyList();
+ }
+
+ final Collection<String> unfilteredCommands =
+ Arrays.stream( Feature.values() )
+ .map( _featureComponents::get )
+ .filter( FeatureComponent::isSelected )
+ .map( FeatureComponent::getSelectedOption )
+ .map( Option::getPiperLines )
+ .flatMap( Collection::stream )
+ .collect( Collectors.toList() );
+
+ final Collection<String> piperCommands = new ArrayList<>();
+ for ( String command : unfilteredCommands ) {
+ if ( !command.isEmpty() ) {
+ if ( piperCommands.contains( command )
+ || !Option.PiperLineRequirements.hasRequirements( command, piperCommands ) ) {
+ continue;
+ }
+ }
+ piperCommands.add( command );
+ }
+ return piperCommands;
+ }
+
+ public String getSummaryInfo() {
+ final Collection<String> summaryLines = new ArrayList<>();
+ for ( FeatureComponent featureComponent : _featureComponents.values() ) {
+ if ( !featureComponent.isSelected() ) {
+ continue;
+ }
+ summaryLines.add( featureComponent.getSelectedOption().getDescription() );
+ }
+ return "<HTML>" + String.join( "<BR>", summaryLines ) + "</HTML>";
+ }
+
+ public Collection<Feature> getSelectedFeatures() {
+ return _featureComponents.entrySet().stream()
+ .filter( e -> e.getValue().isSelected() )
+ .map( Map.Entry::getKey )
+ .collect( Collectors.toList() );
+ }
+
+
+ static public final class FeatureCheckController implements ActionListener {
+ private boolean _activating;
+ private final Map<Feature, FeatureComponent> _featureComponentMap = new EnumMap<>( Feature.class );
+ private final Collection<Feature> _requiredFeatures = new HashSet<>();
+
+ public void addFeature( final Feature feature, final FeatureComponent featureComponent ) {
+ _featureComponentMap.put( feature, featureComponent );
+ }
+
+ private void forceActivate() {
+ _requiredFeatures.clear();
+ _featureComponentMap.entrySet().stream()
+ .filter( e -> e.getValue().isSelected() )
+ .map( Map.Entry::getKey )
+ .map( Feature::getRequirements )
+ .forEach( _requiredFeatures::addAll );
+ _featureComponentMap.forEach( this::forceActivate );
+ }
+
+ private void forceActivate( final Feature feature, final FeatureComponent featureComponent ) {
+ if ( _requiredFeatures.contains( feature ) ) {
+ featureComponent.setSelected( true );
+ featureComponent.setEnabled( false );
+ } else {
+ featureComponent.setEnabled( true );
+ }
+ }
+
+ public void actionPerformed( final ActionEvent event ) {
+ if ( _activating ) {
+ return;
+ }
+ _activating = true;
+ forceActivate();
+ _activating = false;
+ }
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/InstallTypeStep.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/InstallTypeStep.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/InstallTypeStep.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/InstallTypeStep.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,128 @@
+package org.apache.ctakes.dockhand.gui.wizard;
+
+
+import org.apache.ctakes.dockhand.build.LocalInstallBuilder;
+import org.apache.ctakes.dockhand.build.RestDockerBuilder;
+import org.apache.ctakes.gui.wizard.AbstractWizardStep;
+import org.apache.ctakes.gui.wizard.WizardController;
+
+import javax.swing.*;
+import java.awt.*;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.util.ArrayList;
+import java.util.Collection;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/9/2019
+ */
+final public class InstallTypeStep extends AbstractWizardStep implements DhWizardStep {
+
+
+ static private final String LOCAL_BINARY = "Local Installation";
+ static private final String LOCAL_BINARY_DESCRIPTION = "Create a Local Installation of the application.";
+
+ static private final String REST_DOCKER = "Rest Server Docker Bundle";
+ static private final String REST_DOCKER_DESCRIPTION = "Create a Docker File and Supporting Files for a Rest Server.";
+
+ private final DhWizardController _wizardController;
+ private Collection<AbstractButton> _radios;
+
+ public InstallTypeStep( final DhWizardController wizardController ) {
+ super( "Installation Type", "Select the installation Type." );
+ _wizardController = wizardController;
+ }
+
+ public String getInstallationType() {
+ if ( _radios == null ) {
+ return "";
+ }
+ return _radios.stream()
+ .filter( AbstractButton::isSelected )
+ .map( AbstractButton::getText )
+ .findFirst()
+ .orElse( "" );
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ protected JComponent createPanel() {
+ final JComponent panel = new JPanel();
+ panel.setLayout( new BoxLayout( panel, BoxLayout.Y_AXIS ) );
+
+ panel.add( Box.createVerticalStrut( 100 ) );
+ _radios = new ArrayList<>();
+ final ButtonGroup buttonGroup = new ButtonGroup();
+
+ final Runnable localBinaryBuilder = new LocalInstallBuilder( _wizardController );
+ final JRadioButton localBinary = createRadio( _wizardController,
+ LOCAL_BINARY, LOCAL_BINARY_DESCRIPTION, localBinaryBuilder );
+ _wizardController.setBuildProcess( localBinaryBuilder );
+ buttonGroup.add( localBinary );
+ panel.add( localBinary );
+ localBinary.setSelected( true );
+ _radios.add( localBinary );
+
+ final JRadioButton restDocker = createRadio( _wizardController,
+ REST_DOCKER, REST_DOCKER_DESCRIPTION, new RestDockerBuilder( _wizardController ) );
+ buttonGroup.add( restDocker );
+ panel.add( restDocker );
+ _radios.add( restDocker );
+
+
+ panel.add( Box.createVerticalStrut( 100 ) );
+ _radios.forEach( b -> b.setBackground( Color.WHITE ) );
+ return wrapInScrollPane( panel );
+ }
+
+
+ static private JRadioButton createRadio( final WizardController wizardController,
+ final String name,
+ final String description,
+ final Runnable builder ) {
+ final JRadioButton radio = new JRadioButton( name );
+ radio.setToolTipText( description );
+ radio.setActionCommand( name );
+ radio.addActionListener( new BuilderActioner( name, builder, wizardController ) );
+ return radio;
+ }
+
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public String getSummaryInfo() {
+ return getInstallationType();
+ }
+
+
+ static private class BuilderActioner implements ActionListener {
+ private final String _type;
+ private final Runnable _builder;
+ private final WizardController _wizardController;
+
+ private BuilderActioner( final String type,
+ final Runnable builder,
+ final WizardController wizardController ) {
+ _type = type;
+ _builder = builder;
+ _wizardController = wizardController;
+ }
+
+ public void actionPerformed( final ActionEvent event ) {
+ if ( _type.equals( event.getActionCommand() ) ) {
+ final Object source = event.getSource();
+ if ( source instanceof AbstractButton && ((AbstractButton)source).isSelected() ) {
+ _wizardController.setBuildProcess( _builder );
+ }
+ }
+ }
+ }
+
+
+}
Added: ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/OutputStep.java
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/OutputStep.java?rev=1870640&view=auto
==============================================================================
--- ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/OutputStep.java (added)
+++ ctakes/trunk/ctakes-dockhand/src/main/java/org/apache/ctakes/dockhand/gui/wizard/OutputStep.java Sat Nov 30 19:05:56 2019
@@ -0,0 +1,97 @@
+package org.apache.ctakes.dockhand.gui.wizard;
+
+import org.apache.ctakes.dockhand.gui.feature.Option;
+import org.apache.ctakes.dockhand.gui.output.Output;
+import org.apache.ctakes.dockhand.gui.output.OutputComponent;
+import org.apache.ctakes.gui.wizard.AbstractWizardStep;
+
+import javax.swing.*;
+import java.util.*;
+import java.util.stream.Collectors;
+
+/**
+ * @author SPF , chip-nlp
+ * @version %I%
+ * @since 10/9/2019
+ */
+final public class OutputStep extends AbstractWizardStep implements DhWizardStep {
+
+
+ private final Map<Output, OutputComponent> _outputComponents = new EnumMap<>( Output.class );
+
+
+ public OutputStep() {
+ super( "Pipeline Outputs",
+ "Select the pipeline Outputs." );
+ }
+
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ protected JComponent createPanel() {
+ final JComponent panel = new JPanel();
+ panel.setLayout( new BoxLayout( panel, BoxLayout.Y_AXIS ) );
+ panel.add( Box.createVerticalStrut( 100 ) );
+ for ( Output output : Output.values() ) {
+ final OutputComponent outputComponent = new OutputComponent( output );
+ _outputComponents.put( output, outputComponent );
+ panel.add( outputComponent );
+ }
+ panel.add( Box.createVerticalStrut( 100 ) );
+ return wrapInScrollPane( panel );
+ }
+
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public Collection<String> getPiperCommands() {
+ if ( _outputComponents.isEmpty() ) {
+ return Collections.emptyList();
+ }
+
+ final Collection<String> unfilteredCommands =
+ Arrays.stream( Output.values() )
+ .map( _outputComponents::get )
+ .filter( OutputComponent::isSelected )
+ .map( OutputComponent::getOutput )
+ .map( Output::getPiperLines )
+ .flatMap( Collection::stream )
+ .collect( Collectors.toList() );
+
+ final Collection<String> piperCommands = new ArrayList<>();
+ for ( String command : unfilteredCommands ) {
+ if ( !command.isEmpty() ) {
+ if ( piperCommands.contains( command )
+ || !Option.PiperLineRequirements.hasRequirements( command, piperCommands ) ) {
+ continue;
+ }
+ }
+ piperCommands.add( command );
+ }
+ return piperCommands;
+ }
+
+ public String getSummaryInfo() {
+ final Collection<String> summaryLines = new ArrayList<>();
+ for ( OutputComponent outputComponent : _outputComponents.values() ) {
+ if ( !outputComponent.isSelected() ) {
+ continue;
+ }
+ summaryLines.add( outputComponent.getOutput().getDescription() );
+ }
+ return "<HTML>" + String.join( "<BR>", summaryLines ) + "</HTML>";
+ }
+
+ public Collection<Output> getSelectedOutputs() {
+ return _outputComponents.entrySet().stream()
+ .filter( e -> e.getValue().isSelected() )
+ .map( Map.Entry::getKey )
+ .collect( Collectors.toList() );
+ }
+
+
+}