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Posted to issues@airavata.apache.org by "Chathuri Wimalasena (JIRA)" <ji...@apache.org> on 2015/04/15 19:53:59 UTC
[jira] [Created] (AIRAVATA-1674) SSH authentication issue when
submitting to trestles
Chathuri Wimalasena created AIRAVATA-1674:
---------------------------------------------
Summary: SSH authentication issue when submitting to trestles
Key: AIRAVATA-1674
URL: https://issues.apache.org/jira/browse/AIRAVATA-1674
Project: Airavata
Issue Type: Improvement
Affects Versions: 0.14
Reporter: Chathuri Wimalasena
Fix For: 0.15
org.apache.airavata.gfac.GFacException: Error invoking ZK
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:940)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:715)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:495)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:209)
at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:51)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:930)
... 7 more
Caused by: org.apache.airavata.gfac.GFacException: Error occurred...
at org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:181)
at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:45)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:926)
... 7 more
Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: An exception occurred while connecting to server.Connecting server - trestles.sdsc.xsede.org:22 connecting user name - ogce
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:235)
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.<init>(GSISSHAbstractCluster.java:100)
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.<init>(GSISSHAbstractCluster.java:94)
at org.apache.airavata.gsi.ssh.impl.PBSCluster.<init>(PBSCluster.java:44)
at org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:169)
... 9 more
Caused by: java.lang.NumberFormatException: For input string: "18e8:2:102::6"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:580)
at java.lang.Integer.parseInt(Integer.java:615)
at com.sun.jndi.dns.DnsClient.<init>(DnsClient.java:127)
at com.sun.jndi.dns.Resolver.<init>(Resolver.java:61)
at com.sun.jndi.dns.DnsContext.getResolver(DnsContext.java:573)
at com.sun.jndi.dns.DnsContext.c_getAttributes(DnsContext.java:434)
at com.sun.jndi.toolkit.ctx.ComponentDirContext.p_getAttributes(ComponentDirContext.java:235)
at com.sun.jndi.toolkit.ctx.PartialCompositeDirContext.getAttributes(PartialCompositeDirContext.java:141)
at com.sun.jndi.toolkit.url.GenericURLDirContext.getAttributes(GenericURLDirContext.java:103)
at sun.security.krb5.KrbServiceLocator.getKerberosService(KrbServiceLocator.java:85)
at sun.security.krb5.Config.checkRealm(Config.java:1120)
at sun.security.krb5.Config.getRealmFromDNS(Config.java:1093)
at sun.security.krb5.Config.getDefaultRealm(Config.java:987)
at sun.security.krb5.Realm.getDefault(Realm.java:58)
at sun.security.krb5.PrincipalName.<init>(PrincipalName.java:451)
at sun.security.krb5.PrincipalName.<init>(PrincipalName.java:460)
at sun.security.jgss.krb5.Krb5NameElement.getInstance(Krb5NameElement.java:92)
at sun.security.jgss.krb5.Krb5MechFactory.getNameElement(Krb5MechFactory.java:95)
at sun.security.jgss.GSSManagerImpl.getNameElement(GSSManagerImpl.java:203)
at sun.security.jgss.GSSNameImpl.getElement(GSSNameImpl.java:477)
at sun.security.jgss.GSSNameImpl.init(GSSNameImpl.java:201)
at sun.security.jgss.GSSNameImpl.<init>(GSSNameImpl.java:170)
at sun.security.jgss.GSSNameImpl.<init>(GSSNameImpl.java:151)
at sun.security.jgss.GSSManagerImpl.createName(GSSManagerImpl.java:128)
at com.jcraft.jsch.jgss.GSSContextKrb5.create(GSSContextKrb5.java:80)
at com.jcraft.jsch.UserAuthGSSAPIWithMIC.start(UserAuthGSSAPIWithMIC.java:125)
at com.jcraft.jsch.Session.connect(Session.java:463)
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:230)
... 13 more
[ERROR] Error inovoking the job with experiment ID: AmberExperiment_74d527f6-d6dd-4c05-8300-ebd816ccbfb6
[ERROR] Error invoking ZK
org.apache.airavata.gfac.GFacException: Error invoking ZK
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:770)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:495)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:209)
at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:51)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.airavata.gfac.GFacException: Error invoking ZK
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:940)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:715)
... 6 more
Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:930)
... 7 more
Caused by: org.apache.airavata.gfac.GFacException: Error occurred...
at org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:181)
at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:45)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:926)
... 7 more
Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: An exception occurred while connecting to server.Connecting server - trestles.sdsc.xsede.org:22 connecting user name - ogce
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:235)
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.<init>(GSISSHAbstractCluster.java:100)
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.<init>(GSISSHAbstractCluster.java:94)
at org.apache.airavata.gsi.ssh.impl.PBSCluster.<init>(PBSCluster.java:44)
at org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:169)
... 9 more
Caused by: java.lang.NumberFormatException: For input string: "18e8:2:102::6"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:580)
at java.lang.Integer.parseInt(Integer.java:615)
at com.sun.jndi.dns.DnsClient.<init>(DnsClient.java:127)
at com.sun.jndi.dns.Resolver.<init>(Resolver.java:61)
at com.sun.jndi.dns.DnsContext.getResolver(DnsContext.java:573)
at com.sun.jndi.dns.DnsContext.c_getAttributes(DnsContext.java:434)
at com.sun.jndi.toolkit.ctx.ComponentDirContext.p_getAttributes(ComponentDirContext.java:235)
at com.sun.jndi.toolkit.ctx.PartialCompositeDirContext.getAttributes(PartialCompositeDirContext.java:141)
at com.sun.jndi.toolkit.url.GenericURLDirContext.getAttributes(GenericURLDirContext.java:103)
at sun.security.krb5.KrbServiceLocator.getKerberosService(KrbServiceLocator.java:85)
at sun.security.krb5.Config.checkRealm(Config.java:1120)
at sun.security.krb5.Config.getRealmFromDNS(Config.java:1093)
at sun.security.krb5.Config.getDefaultRealm(Config.java:987)
at sun.security.krb5.Realm.getDefault(Realm.java:58)
at sun.security.krb5.PrincipalName.<init>(PrincipalName.java:451)
at sun.security.krb5.PrincipalName.<init>(PrincipalName.java:460)
at sun.security.jgss.krb5.Krb5NameElement.getInstance(Krb5NameElement.java:92)
at sun.security.jgss.krb5.Krb5MechFactory.getNameElement(Krb5MechFactory.java:95)
at sun.security.jgss.GSSManagerImpl.getNameElement(GSSManagerImpl.java:203)
at sun.security.jgss.GSSNameImpl.getElement(GSSNameImpl.java:477)
at sun.security.jgss.GSSNameImpl.init(GSSNameImpl.java:201)
at sun.security.jgss.GSSNameImpl.<init>(GSSNameImpl.java:170)
at sun.security.jgss.GSSNameImpl.<init>(GSSNameImpl.java:151)
at sun.security.jgss.GSSManagerImpl.createName(GSSManagerImpl.java:128)
at com.jcraft.jsch.jgss.GSSContextKrb5.create(GSSContextKrb5.java:80)
at com.jcraft.jsch.UserAuthGSSAPIWithMIC.start(UserAuthGSSAPIWithMIC.java:125)
at com.jcraft.jsch.Session.connect(Session.java:463)
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:230)
... 13 more
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