You are viewing a plain text version of this content. The canonical link for it is here.
Posted to issues@arrow.apache.org by "paleolimbot (via GitHub)" <gi...@apache.org> on 2023/04/19 17:03:29 UTC
[GitHub] [arrow] paleolimbot opened a new issue, #35238: [R] Test segfault on roundtripping with metadata
paleolimbot opened a new issue, #35238:
URL: https://github.com/apache/arrow/issues/35238
### Describe the bug, including details regarding any error messages, version, and platform.
The last PR that touched metadata that I know about was #35039 (not sure if that is the root cause of this, though).
Link: https://github.com/apache/arrow/actions/runs/4744364907/jobs/8425173205?pr=35219#step:7:25535
Output:
```
Start test: Table with metadata roundtrip
*** caught segfault ***
address 0xb8, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault (core dumped)
```
### Component(s)
R
--
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
To unsubscribe, e-mail: issues-unsubscribe@arrow.apache.org.apache.org
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [arrow] nealrichardson commented on issue #35238: [R] Test segfault on roundtripping with metadata
Posted by "nealrichardson (via GitHub)" <gi...@apache.org>.
nealrichardson commented on issue #35238:
URL: https://github.com/apache/arrow/issues/35238#issuecomment-1515133233
Looking at GHA logs, https://github.com/apache/arrow/actions/runs/4679740818/jobs/8290179008#step:7:28473 is the first time I see this on `main`.
--
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
To unsubscribe, e-mail: github-unsubscribe@arrow.apache.org
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [arrow] paleolimbot commented on issue #35238: [R] Test segfault on roundtripping with metadata
Posted by "paleolimbot (via GitHub)" <gi...@apache.org>.
paleolimbot commented on issue #35238:
URL: https://github.com/apache/arrow/issues/35238#issuecomment-1517848623
I managed to [reproduce the segfault](https://github.com/apache/arrow/actions/runs/4755090472/jobs/8469710267?pr=35254#step:7:26465) on the PR reverting #35039 which rules out that (phew!).
--
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
To unsubscribe, e-mail: github-unsubscribe@arrow.apache.org
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [arrow] paleolimbot commented on issue #35238: [R] Test segfault on roundtripping with metadata
Posted by "paleolimbot (via GitHub)" <gi...@apache.org>.
paleolimbot commented on issue #35238:
URL: https://github.com/apache/arrow/issues/35238#issuecomment-1517132848
Hmm...reverting #35039 does seem to do it and the timing checks out; however I don't know why and haven't been able to replicate the segfault locally (also, I may have just gotten lucky the four times I re-ran the check that keeps segfaulting). Trying conda nightlies locally might be a good next step....I think that CI job links to a shared libarrow.so between R and Python which is a little unique in terms of real-world setups.
--
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
To unsubscribe, e-mail: github-unsubscribe@arrow.apache.org
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [arrow] nealrichardson commented on issue #35238: [R] Test segfault on roundtripping with metadata
Posted by "nealrichardson (via GitHub)" <gi...@apache.org>.
nealrichardson commented on issue #35238:
URL: https://github.com/apache/arrow/issues/35238#issuecomment-1529100554
I'm now consistently seeing segfault on the flight tests (which also use pyarrow), e.g. https://github.com/apache/arrow/actions/runs/4832158272/jobs/8610556710#step:7:28324
--
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
To unsubscribe, e-mail: github-unsubscribe@arrow.apache.org
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [arrow] nealrichardson commented on issue #35238: [R] Test segfault on roundtripping with metadata
Posted by "nealrichardson (via GitHub)" <gi...@apache.org>.
nealrichardson commented on issue #35238:
URL: https://github.com/apache/arrow/issues/35238#issuecomment-1515139925
Also worth noting that the test in question is https://github.com/apache/arrow/blob/main/r/tests/testthat/test-python.R#L114, i.e. roundtrip between R and Python.
--
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
To unsubscribe, e-mail: github-unsubscribe@arrow.apache.org
For queries about this service, please contact Infrastructure at:
users@infra.apache.org
[GitHub] [arrow] paleolimbot commented on issue #35238: [R] Test segfault on roundtripping with metadata
Posted by "paleolimbot (via GitHub)" <gi...@apache.org>.
paleolimbot commented on issue #35238:
URL: https://github.com/apache/arrow/issues/35238#issuecomment-1515160155
Very possibly related is this one: #34897 .
--
This is an automated message from the Apache Git Service.
To respond to the message, please log on to GitHub and use the
URL above to go to the specific comment.
To unsubscribe, e-mail: github-unsubscribe@arrow.apache.org
For queries about this service, please contact Infrastructure at:
users@infra.apache.org