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Posted to issues@spark.apache.org by "Andrew Clegg (JIRA)" <ji...@apache.org> on 2018/04/17 09:54:00 UTC
[jira] [Comment Edited] (SPARK-22371) dag-scheduler-event-loop
thread stopped with error Attempted to access garbage collected
accumulator 5605982
[ https://issues.apache.org/jira/browse/SPARK-22371?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16440683#comment-16440683 ]
Andrew Clegg edited comment on SPARK-22371 at 4/17/18 9:53 AM:
---------------------------------------------------------------
Another data point -- I've seen this happen (in 2.3.0) during cleanup after a task failure:
{code:none}
Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Exception while getting task result: java.lang.IllegalStateException: Attempted to access garbage collected accumulator 365
at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1599)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1587)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1586)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1586)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:831)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1820)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1769)
at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1758)
at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:642)
at org.apache.spark.SparkContext.runJob(SparkContext.scala:2027)
at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:194)
... 31 more
{code}
was (Author: aclegg):
Another data point -- I've seen this happen (in 2.3.0) during cleanup after a task failure:
{{Caused by: org.apache.spark.SparkException: Job aborted due to stage failure: Exception while getting task result: java.lang.IllegalStateException: Attempted to access garbage collected accumulator 365}}
{{ at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1599)}}
{{ at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1587)}}
{{ at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1586)}}
{{ at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)}}
{{ at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)}}
{{ at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1586)}}
{{ at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)}}
{{ at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:831)}}
{{ at scala.Option.foreach(Option.scala:257)}}
{{ at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:831)}}
{{ at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1820)}}
{{ at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1769)}}
{{ at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1758)}}
{{ at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)}}
{{ at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:642)}}
{{ at org.apache.spark.SparkContext.runJob(SparkContext.scala:2027)}}
{{ at org.apache.spark.sql.execution.datasources.FileFormatWriter$.write(FileFormatWriter.scala:194)}}
{{ ... 31 more}}
> dag-scheduler-event-loop thread stopped with error Attempted to access garbage collected accumulator 5605982
> -------------------------------------------------------------------------------------------------------------
>
> Key: SPARK-22371
> URL: https://issues.apache.org/jira/browse/SPARK-22371
> Project: Spark
> Issue Type: Bug
> Components: Spark Core
> Affects Versions: 2.1.0
> Reporter: Mayank Agarwal
> Priority: Major
> Attachments: Helper.scala, ShuffleIssue.java, driver-thread-dump-spark2.1.txt, sampledata
>
>
> Our Spark Jobs are getting stuck on DagScheduler.runJob as dagscheduler thread is stopped because of *Attempted to access garbage collected accumulator 5605982*.
> from our investigation it look like accumulator is cleaned by GC first and same accumulator is used for merging the results from executor on task completion event.
> As the error java.lang.IllegalAccessError is LinkageError which is treated as FatalError so dag-scheduler loop is finished with below exception.
> ---ERROR stack trace --
> Exception in thread "dag-scheduler-event-loop" java.lang.IllegalAccessError: Attempted to access garbage collected accumulator 5605982
> at org.apache.spark.util.AccumulatorContext$$anonfun$get$1.apply(AccumulatorV2.scala:253)
> at org.apache.spark.util.AccumulatorContext$$anonfun$get$1.apply(AccumulatorV2.scala:249)
> at scala.Option.map(Option.scala:146)
> at org.apache.spark.util.AccumulatorContext$.get(AccumulatorV2.scala:249)
> at org.apache.spark.scheduler.DAGScheduler$$anonfun$updateAccumulators$1.apply(DAGScheduler.scala:1083)
> at org.apache.spark.scheduler.DAGScheduler$$anonfun$updateAccumulators$1.apply(DAGScheduler.scala:1080)
> at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
> at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
> at org.apache.spark.scheduler.DAGScheduler.updateAccumulators(DAGScheduler.scala:1080)
> at org.apache.spark.scheduler.DAGScheduler.handleTaskCompletion(DAGScheduler.scala:1183)
> at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1647)
> at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1605)
> at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1594)
> at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
> I am attaching the thread dump of driver as well
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