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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/23 11:24:50 UTC
[03/16] incubator-taverna-workbench-common-activities git commit:
Revert "Temporarily empty repository"
http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/54050685/taverna-wsdl-activity-ui/src/test/resources/kegg.wsdl
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diff --git a/taverna-wsdl-activity-ui/src/test/resources/kegg.wsdl b/taverna-wsdl-activity-ui/src/test/resources/kegg.wsdl
new file mode 100644
index 0000000..a62b707
--- /dev/null
+++ b/taverna-wsdl-activity-ui/src/test/resources/kegg.wsdl
@@ -0,0 +1,1889 @@
+<?xml version="1.0"?>
+<definitions
+ name="KEGG_v6.1"
+ xmlns:typens="SOAP/KEGG"
+ xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/"
+ xmlns:soapenc="http://schemas.xmlsoap.org/soap/encoding/"
+ xmlns:wsdl="http://schemas.xmlsoap.org/wsdl/"
+ xmlns="http://schemas.xmlsoap.org/wsdl/"
+ targetNamespace="SOAP/KEGG">
+
+ <types>
+ <xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema" targetNamespace="SOAP/KEGG">
+ <xsd:import namespace="http://schemas.xmlsoap.org/soap/encoding/"/>
+ <xsd:import namespace="http://schemas.xmlsoap.org/wsdl/"/>
+<!-- common variable -->
+ <xsd:complexType name="ArrayOfint">
+ <xsd:complexContent>
+ <xsd:restriction base="soapenc:Array">
+
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="xsd:int[]"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+ <xsd:complexType name="ArrayOfstring">
+ <xsd:complexContent>
+ <xsd:restriction base="soapenc:Array">
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="xsd:string[]"/>
+ </xsd:restriction>
+
+ </xsd:complexContent>
+ </xsd:complexType>
+<!-- SSDB -->
+ <xsd:complexType name="SSDBRelation">
+ <xsd:all>
+ <xsd:element name="genes_id1" type="xsd:string"/>
+ <xsd:element name="genes_id2" type="xsd:string"/>
+ <xsd:element name="sw_score" type="xsd:int"/>
+ <xsd:element name="bit_score" type="xsd:float"/>
+
+ <xsd:element name="identity" type="xsd:float"/>
+ <xsd:element name="overlap" type="xsd:int"/>
+ <xsd:element name="start_position1" type="xsd:int"/>
+ <xsd:element name="end_position1" type="xsd:int"/>
+ <xsd:element name="start_position2" type="xsd:int"/>
+ <xsd:element name="end_position2" type="xsd:int"/>
+ <xsd:element name="best_flag_1to2" type="xsd:boolean"/>
+ <xsd:element name="best_flag_2to1" type="xsd:boolean"/>
+ <xsd:element name="definition1" type="xsd:string"/>
+
+ <xsd:element name="definition2" type="xsd:string"/>
+ <xsd:element name="length1" type="xsd:int"/>
+ <xsd:element name="length2" type="xsd:int"/>
+ </xsd:all>
+ </xsd:complexType>
+ <xsd:complexType name="ArrayOfSSDBRelation">
+ <xsd:complexContent>
+ <xsd:restriction base="soapenc:Array">
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:SSDBRelation[]"/>
+
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+<!-- MOTIF -->
+ <xsd:complexType name="MotifResult">
+ <xsd:all>
+ <xsd:element name="motif_id" type="xsd:string"/>
+ <xsd:element name="definition" type="xsd:string"/>
+ <xsd:element name="genes_id" type="xsd:string"/>
+
+ <xsd:element name="start_position" type="xsd:int"/>
+ <xsd:element name="end_position" type="xsd:int"/>
+ <xsd:element name="score" type="xsd:float"/>
+ <xsd:element name="evalue" type="xsd:double"/>
+ </xsd:all>
+ </xsd:complexType>
+ <xsd:complexType name="ArrayOfMotifResult">
+ <xsd:complexContent>
+ <xsd:restriction base="soapenc:Array">
+
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:MotifResult[]"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+<!-- DEFINITION -->
+ <xsd:complexType name="Definition">
+ <xsd:all>
+ <xsd:element name="entry_id" type="xsd:string"/>
+ <xsd:element name="definition" type="xsd:string"/>
+
+ </xsd:all>
+ </xsd:complexType>
+ <xsd:complexType name="ArrayOfDefinition">
+ <xsd:complexContent>
+ <xsd:restriction base="soapenc:Array">
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:Definition[]"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+<!-- LinkDB -->
+ <xsd:complexType name="LinkDBRelation">
+ <xsd:all>
+ <xsd:element name="entry_id1" type="xsd:string"/>
+ <xsd:element name="entry_id2" type="xsd:string"/>
+ <xsd:element name="type" type="xsd:string"/>
+ <xsd:element name="path" type="xsd:string"/>
+ </xsd:all>
+ </xsd:complexType>
+
+ <xsd:complexType name="ArrayOfLinkDBRelation">
+ <xsd:complexContent>
+ <xsd:restriction base="soapenc:Array">
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:LinkDBRelation[]"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+<!-- Pathway -->
+ <xsd:complexType name="PathwayElement">
+
+ <xsd:all>
+ <xsd:element name="element_id" type="xsd:int"/>
+ <xsd:element name="type" type="xsd:string"/>
+ <xsd:element name="names" type="typens:ArrayOfstring"/>
+ <xsd:element name="components" type="typens:ArrayOfint"/>
+ </xsd:all>
+ </xsd:complexType>
+ <xsd:complexType name="ArrayOfPathwayElement">
+ <xsd:complexContent>
+
+ <xsd:restriction base="soapenc:Array">
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:PathwayElement[]"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+ <xsd:complexType name="PathwayElementRelation">
+ <xsd:all>
+ <xsd:element name="element_id1" type="xsd:int"/>
+ <xsd:element name="element_id2" type="xsd:int"/>
+
+ <xsd:element name="type" type="xsd:string"/>
+ <!--xsd:element name="name" type="xsd:string"/-->
+ <xsd:element name="subtypes" type="typens:ArrayOfSubtype"/>
+ </xsd:all>
+ </xsd:complexType>
+ <xsd:complexType name="ArrayOfPathwayElementRelation">
+ <xsd:complexContent>
+ <xsd:restriction base="soapenc:Array">
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:PathwayElementRelation[]"/>
+
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+ <xsd:complexType name="Subtype">
+ <xsd:all>
+ <xsd:element name="relation" type="xsd:string"/>
+ <xsd:element name="element_id" type="xsd:int"/>
+ <xsd:element name="type" type="xsd:string"/>
+ </xsd:all>
+
+ </xsd:complexType>
+ <xsd:complexType name="ArrayOfSubtype">
+ <xsd:complexContent>
+ <xsd:restriction base="soapenc:Array">
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:Subtype[]"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+<!-- v6.0 -->
+
+ <xsd:complexType name="StructureAlignment">
+ <xsd:all>
+ <xsd:element name="target_id" type="xsd:string"/>
+ <xsd:element name="score" type="xsd:float"/>
+ <xsd:element name="query_nodes" type="typens:ArrayOfint"/>
+ <xsd:element name="target_nodes" type="typens:ArrayOfint"/>
+ </xsd:all>
+ </xsd:complexType>
+ <xsd:complexType name="ArrayOfStructureAlignment">
+
+ <xsd:complexContent>
+ <xsd:restriction base="soapenc:Array">
+ <xsd:attribute ref="soapenc:arrayType" wsdl:arrayType="typens:StructureAlignment[]"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ </xsd:schema>
+ </types>
+
+<!-- KEGG information -->
+<!-- list_databases -->
+ <message name="list_databasesRequest"/>
+ <message name="list_databasesResponse">
+ <part name="return" type="typens:ArrayOfDefinition"/>
+ </message>
+<!-- list_organisms -->
+ <message name="list_organismsRequest"/>
+ <message name="list_organismsResponse">
+ <part name="return" type="typens:ArrayOfDefinition"/>
+
+ </message>
+<!-- list_pathways -->
+ <message name="list_pathwaysRequest">
+ <part name="org" type="xsd:string"/>
+ </message>
+ <message name="list_pathwaysResponse">
+ <part name="return" type="typens:ArrayOfDefinition"/>
+ </message>
+<!-- list_ko_classes -->
+ <message name="list_ko_classesRequest">
+
+ <part name="class_id" type="xsd:string"/>
+ </message>
+ <message name="list_ko_classesResponse">
+ <part name="return" type="typens:ArrayOfDefinition"/>
+ </message>
+<!-- DBGET -->
+<!-- binfo -->
+ <message name="binfoRequest">
+ <part name="db" type="xsd:string"/>
+ </message>
+
+ <message name="binfoResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+<!-- bget -->
+ <message name="bgetRequest">
+ <part name="string" type="xsd:string"/>
+ </message>
+ <message name="bgetResponse">
+ <part name="return" type="xsd:string"/>
+
+ </message>
+<!-- bfind -->
+ <message name="bfindRequest">
+ <part name="string" type="xsd:string"/>
+ </message>
+ <message name="bfindResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+<!-- btit -->
+ <message name="btitRequest">
+
+ <part name="string" type="xsd:string"/>
+ </message>
+ <message name="btitResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+<!-- bconv -->
+ <message name="bconvRequest">
+ <part name="string" type="xsd:string"/>
+ </message>
+
+ <message name="bconvResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+<!-- LinkDB -->
+ <message name="get_linkdb_by_entryRequest">
+ <part name="entry_id" type="xsd:string"/>
+ <part name="db" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+
+ </message>
+ <message name="get_linkdb_by_entryResponse">
+ <part name="return" type="typens:ArrayOfLinkDBRelation"/>
+ </message>
+<!-- SSDB -->
+<!-- get_best_neighbors_by_gene -->
+ <message name="get_best_neighbors_by_geneRequest">
+ <part name="genes_id" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+
+ </message>
+ <message name="get_best_neighbors_by_geneResponse">
+ <part name="return" type="typens:ArrayOfSSDBRelation"/>
+ </message>
+<!-- get_best_best_neighbors_by_gene -->
+ <message name="get_best_best_neighbors_by_geneRequest">
+ <part name="genes_id" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+
+ </message>
+ <message name="get_best_best_neighbors_by_geneResponse">
+ <part name="return" type="typens:ArrayOfSSDBRelation"/>
+ </message>
+<!-- get_reverse_best_neighbors_by_gene -->
+ <message name="get_reverse_best_neighbors_by_geneRequest">
+ <part name="genes_id" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+
+ </message>
+ <message name="get_reverse_best_neighbors_by_geneResponse">
+ <part name="return" type="typens:ArrayOfSSDBRelation"/>
+ </message>
+<!-- get_paralogs_by_geneRequest -->
+ <message name="get_paralogs_by_geneRequest">
+ <part name="genes_id" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+
+ </message>
+ <message name="get_paralogs_by_geneResponse">
+ <part name="return" type="typens:ArrayOfSSDBRelation"/>
+ </message>
+<!-- MOTIF -->
+<!-- get_motifs_by_gene -->
+ <message name="get_motifs_by_geneRequest">
+ <part name="genes_id" type="xsd:string"/>
+ <part name="db" type="xsd:string"/>
+ </message>
+
+ <message name="get_motifs_by_geneResponse">
+ <part name="return" type="typens:ArrayOfMotifResult"/>
+ </message>
+<!-- get_genes_by_motifs -->
+ <message name="get_genes_by_motifsRequest">
+ <part name="motif_id_list" type="typens:ArrayOfstring"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+ </message>
+
+ <message name="get_genes_by_motifsResponse">
+ <part name="return" type="typens:ArrayOfDefinition"/>
+ </message>
+<!-- KO,OC,PC -->
+<!-- get_ko_by_gene -->
+ <message name="get_ko_by_geneRequest">
+ <part name="genes_id" type="xsd:string"/>
+ </message>
+ <message name="get_ko_by_geneResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+
+ </message>
+<!-- get_ko_by_ko_class -->
+ <message name="get_ko_by_ko_classRequest">
+ <part name="class_id" type="xsd:string"/>
+ </message>
+ <message name="get_ko_by_ko_classResponse">
+ <part name="return" type="typens:ArrayOfDefinition"/>
+ </message>
+<!-- get_genes_by_ko -->
+ <message name="get_genes_by_koRequest">
+
+ <part name="ko_id" type="xsd:string"/>
+ <part name="org" type="xsd:string"/>
+ </message>
+ <message name="get_genes_by_koResponse">
+ <part name="return" type="typens:ArrayOfDefinition"/>
+ </message>
+<!-- get_genes_by_ko_class -->
+ <message name="get_genes_by_ko_classRequest">
+ <part name="class_id" type="xsd:string"/>
+
+ <part name="org" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+ </message>
+ <message name="get_genes_by_ko_classResponse">
+ <part name="return" type="typens:ArrayOfDefinition"/>
+ </message>
+<!-- get_oc_members_by_gene -->
+<!--
+ <message name="get_oc_members_by_geneRequest">
+ <part name="genes_id" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+ </message>
+ <message name="get_oc_members_by_geneResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+-->
+<!-- get_pc_members_by_gene -->
+
+<!--
+ <message name="get_pc_members_by_geneRequest">
+ <part name="genes_id" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+ </message>
+ <message name="get_pc_members_by_geneResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+-->
+<!-- PATHWAY -->
+<!-- Coloring pathways -->
+<!-- mark_pathway_by_objects -->
+ <message name="get_elements_by_pathwayRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ </message>
+ <message name="get_elements_by_pathwayResponse">
+ <part name="return" type="typens:ArrayOfPathwayElement"/>
+ </message>
+ <message name="get_element_relations_by_pathwayRequest">
+
+ <part name="pathway_id" type="xsd:string"/>
+ </message>
+ <message name="get_element_relations_by_pathwayResponse">
+ <part name="return" type="typens:ArrayOfPathwayElementRelation"/>
+ </message>
+ <message name="color_pathway_by_elementsRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ <part name="element_list" type="typens:ArrayOfint"/>
+ <part name="fg_color_list" type="typens:ArrayOfstring"/>
+
+ <part name="bg_color_list" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="color_pathway_by_elementsResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+ <message name="get_html_of_colored_pathway_by_elementsRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ <part name="element_list" type="typens:ArrayOfint"/>
+ <part name="fg_color_list" type="typens:ArrayOfstring"/>
+
+ <part name="bg_color_list" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_html_of_colored_pathway_by_elementsResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+
+ <message name="mark_pathway_by_objectsRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ <part name="object_id_list" type="typens:ArrayOfstring"/>
+
+ </message>
+ <message name="mark_pathway_by_objectsResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+<!-- color_pathway_by_objects -->
+ <message name="color_pathway_by_objectsRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ <part name="object_id_list" type="typens:ArrayOfstring"/>
+ <part name="fg_color_list" type="typens:ArrayOfstring"/>
+
+ <part name="bg_color_list" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="color_pathway_by_objectsResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+<!-- get_html_org_marked_pathway_by_objects -->
+ <message name="get_html_of_marked_pathway_by_objectsRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ <part name="object_id_list" type="typens:ArrayOfstring"/>
+
+ </message>
+ <message name="get_html_of_marked_pathway_by_objectsResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+<!-- get_html_of_colored_pathway_by_objects -->
+ <message name="get_html_of_colored_pathway_by_objectsRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ <part name="object_id_list" type="typens:ArrayOfstring"/>
+ <part name="fg_color_list" type="typens:ArrayOfstring"/>
+
+ <part name="bg_color_list" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_html_of_colored_pathway_by_objectsResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+<!-- Objects on the pathway -->
+<!-- get_genes_by_pathway -->
+ <message name="get_genes_by_pathwayRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ </message>
+
+ <message name="get_genes_by_pathwayResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+<!-- get_enzymes_by_pathway -->
+ <message name="get_enzymes_by_pathwayRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ </message>
+ <message name="get_enzymes_by_pathwayResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+
+ </message>
+<!-- get_reactions_by_pathway -->
+ <message name="get_reactions_by_pathwayRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ </message>
+ <message name="get_reactions_by_pathwayResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+<!-- Pathways by objects -->
+<!-- get_pathways_by_genes -->
+
+ <message name="get_pathways_by_genesRequest">
+ <part name="genes_id_list" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_pathways_by_genesResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+<!-- get_pathways_by_enzymes -->
+ <message name="get_pathways_by_enzymesRequest">
+ <part name="enzyme_id_list" type="typens:ArrayOfstring"/>
+
+ </message>
+ <message name="get_pathways_by_enzymesResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+<!-- get_pathways_by_reactions -->
+ <message name="get_pathways_by_reactionsRequest">
+ <part name="reaction_id_list" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_pathways_by_reactionsResponse">
+
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+<!-- Mutual transformation of objects -->
+<!-- Relation among pathways -->
+<!-- get_linked_pathways -->
+ <message name="get_linked_pathwaysRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ </message>
+ <message name="get_linked_pathwaysResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+
+ </message>
+<!-- Relation among genes and enzymes -->
+<!-- get_genes_by_enzyme -->
+ <message name="get_genes_by_enzymeRequest">
+ <part name="enzyme_id" type="xsd:string"/>
+ <part name="org" type="xsd:string"/>
+ </message>
+ <message name="get_genes_by_enzymeResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+
+<!-- get_enzymes_by_gene -->
+ <message name="get_enzymes_by_geneRequest">
+ <part name="genes_id" type="xsd:string"/>
+ </message>
+ <message name="get_enzymes_by_geneResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+<!-- Relation among enzymes, compounds and reactions -->
+<!-- get_enzymes_by_reaction -->
+ <message name="get_enzymes_by_reactionRequest">
+
+ <part name="reaction_id" type="xsd:string"/>
+ </message>
+ <message name="get_enzymes_by_reactionResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+<!-- get_reactions_by_enzyme -->
+ <message name="get_reactions_by_enzymeRequest">
+ <part name="enzyme_id" type="xsd:string"/>
+ </message>
+
+ <message name="get_reactions_by_enzymeResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+<!-- GENES -->
+<!-- get_genes_by_organism -->
+ <message name="get_genes_by_organismRequest">
+ <part name="org" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+ </message>
+
+ <message name="get_genes_by_organismResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+<!-- GENOME -->
+<!-- get_number_of_genes_by_organism -->
+ <message name="get_number_of_genes_by_organismRequest">
+ <part name="abbr" type="xsd:string"/>
+ </message>
+ <message name="get_number_of_genes_by_organismResponse">
+ <part name="return" type="xsd:int"/>
+
+ </message>
+<!-- LIGAND -->
+ <message name="get_reactions_by_glycanRequest">
+ <part name="glycan_id" type="xsd:string"/>
+ </message>
+ <message name="get_reactions_by_glycanResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_reactions_by_compoundRequest">
+
+ <part name="compound_id" type="xsd:string"/>
+ </message>
+ <message name="get_reactions_by_compoundResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_enzymes_by_glycanRequest">
+ <part name="glycan_id" type="xsd:string"/>
+ </message>
+ <message name="get_enzymes_by_glycanResponse">
+
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_enzymes_by_compoundRequest">
+ <part name="compound_id" type="xsd:string"/>
+ </message>
+ <message name="get_enzymes_by_compoundResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_pathways_by_compoundsRequest">
+
+ <part name="compound_id_list" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_pathways_by_compoundsResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_pathways_by_glycansRequest">
+ <part name="glycan_id_list" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_pathways_by_glycansResponse">
+
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_compounds_by_pathwayRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ </message>
+ <message name="get_compounds_by_pathwayResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_compounds_by_enzymeRequest">
+
+ <part name="enzyme_id" type="xsd:string"/>
+ </message>
+ <message name="get_compounds_by_enzymeResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_glycans_by_enzymeRequest">
+ <part name="enzyme_id" type="xsd:string"/>
+ </message>
+ <message name="get_glycans_by_enzymeResponse">
+
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_glycans_by_pathwayRequest">
+ <part name="pathway_id" type="xsd:string"/>
+ </message>
+ <message name="get_glycans_by_pathwayResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_compounds_by_reactionRequest">
+
+ <part name="reaction_id" type="xsd:string"/>
+ </message>
+ <message name="get_compounds_by_reactionResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_glycans_by_reactionRequest">
+ <part name="reaction_id" type="xsd:string"/>
+ </message>
+ <message name="get_glycans_by_reactionResponse">
+
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="convert_mol_to_kcfRequest">
+ <part name="mol_text" type="xsd:string"/>
+ </message>
+ <message name="convert_mol_to_kcfResponse">
+ <part name="return" type="xsd:string"/>
+ </message>
+ <message name="get_kos_by_pathwayRequest">
+
+ <part name="pathway_id" type="xsd:string"/>
+ </message>
+ <message name="get_kos_by_pathwayResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+ <message name="get_pathways_by_kosRequest">
+ <part name="ko_id_list" type="typens:ArrayOfstring"/>
+ <part name="org" type="xsd:string"/>
+ </message>
+
+ <message name="get_pathways_by_kosResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+
+<!-- v6.0 -->
+ <message name="search_compounds_by_nameRequest">
+ <part name="name" type="xsd:string"/>
+ </message>
+ <message name="search_compounds_by_nameResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+
+ </message>
+
+ <message name="search_glycans_by_nameRequest">
+ <part name="name" type="xsd:string"/>
+ </message>
+ <message name="search_glycans_by_nameResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+
+ <message name="search_compounds_by_compositionRequest">
+
+ <part name="composition" type="xsd:string"/>
+ </message>
+ <message name="search_compounds_by_compositionResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+
+ <message name="search_compounds_by_massRequest">
+ <part name="mass" type="xsd:float"/>
+ <part name="range" type="xsd:float"/>
+
+ </message>
+ <message name="search_compounds_by_massResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+
+ <message name="search_glycans_by_massRequest">
+ <part name="mass" type="xsd:float"/>
+ <part name="range" type="xsd:float"/>
+ </message>
+
+ <message name="search_glycans_by_massResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+
+ <message name="search_glycans_by_compositionRequest">
+ <part name="composition" type="xsd:string"/>
+ </message>
+ <message name="search_glycans_by_compositionResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+
+ </message>
+
+ <message name="search_compounds_by_subcompRequest">
+ <part name="mol" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+ </message>
+ <message name="search_compounds_by_subcompResponse">
+ <part name="return" type="typens:ArrayOfStructureAlignment"/>
+
+ </message>
+
+ <message name="search_glycans_by_kcamRequest">
+ <part name="kcf" type="xsd:string"/>
+ <part name="program" type="xsd:string"/>
+ <part name="option" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+ </message>
+
+ <message name="search_glycans_by_kcamResponse">
+ <part name="return" type="typens:ArrayOfStructureAlignment"/>
+ </message>
+
+ <message name="get_linkdb_between_databasesRequest">
+ <part name="from_db" type="xsd:string"/>
+ <part name="to_db" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+
+ </message>
+ <message name="get_linkdb_between_databasesResponse">
+ <part name="return" type="typens:ArrayOfLinkDBRelation"/>
+ </message>
+
+<!-- v6.1 -->
+ <message name="search_drugs_by_nameRequest">
+ <part name="name" type="xsd:string"/>
+ </message>
+ <message name="search_drugs_by_nameResponse">
+
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+
+ <message name="search_drugs_by_compositionRequest">
+ <part name="composition" type="xsd:string"/>
+ </message>
+ <message name="search_drugs_by_compositionResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+
+ <message name="search_drugs_by_massRequest">
+ <part name="mass" type="xsd:float"/>
+ <part name="range" type="xsd:float"/>
+ </message>
+ <message name="search_drugs_by_massResponse">
+ <part name="return" type="typens:ArrayOfstring"/>
+ </message>
+
+ <message name="search_drugs_by_subcompRequest">
+
+ <part name="mol" type="xsd:string"/>
+ <part name="offset" type="xsd:int"/>
+ <part name="limit" type="xsd:int"/>
+ </message>
+ <message name="search_drugs_by_subcompResponse">
+ <part name="return" type="typens:ArrayOfStructureAlignment"/>
+ </message>
+
+ <portType name="KEGGPortType">
+
+<!-- KEGG information -->
+ <operation name="list_databases">
+ <input message="typens:list_databasesRequest"/>
+ <output message="typens:list_databasesResponse"/>
+ </operation>
+ <operation name="list_organisms">
+ <input message="typens:list_organismsRequest"/>
+ <output message="typens:list_organismsResponse"/>
+ </operation>
+
+ <operation name="list_pathways">
+ <input message="typens:list_pathwaysRequest"/>
+ <output message="typens:list_pathwaysResponse"/>
+ </operation>
+ <operation name="list_ko_classes">
+ <input message="typens:list_ko_classesRequest"/>
+ <output message="typens:list_ko_classesResponse"/>
+ </operation>
+<!-- DBGET -->
+
+ <operation name="binfo">
+ <input message="typens:binfoRequest"/>
+ <output message="typens:binfoResponse"/>
+ </operation>
+ <operation name="bget">
+ <input message="typens:bgetRequest"/>
+ <output message="typens:bgetResponse"/>
+ </operation>
+ <operation name="bfind">
+
+ <input message="typens:bfindRequest"/>
+ <output message="typens:bfindResponse"/>
+ </operation>
+ <operation name="btit">
+ <input message="typens:btitRequest"/>
+ <output message="typens:btitResponse"/>
+ </operation>
+ <operation name="bconv">
+ <input message="typens:bconvRequest"/>
+
+ <output message="typens:bconvResponse"/>
+ </operation>
+<!-- LinkDB -->
+ <operation name="get_linkdb_by_entry">
+ <input message="typens:get_linkdb_by_entryRequest"/>
+ <output message="typens:get_linkdb_by_entryResponse"/>
+ </operation>
+<!-- SSDB -->
+ <operation name="get_best_neighbors_by_gene">
+ <input message="typens:get_best_neighbors_by_geneRequest"/>
+
+ <output message="typens:get_best_neighbors_by_geneResponse"/>
+ </operation>
+ <operation name="get_best_best_neighbors_by_gene">
+ <input message="typens:get_best_best_neighbors_by_geneRequest"/>
+ <output message="typens:get_best_best_neighbors_by_geneResponse"/>
+ </operation>
+ <operation name="get_reverse_best_neighbors_by_gene">
+ <input message="typens:get_reverse_best_neighbors_by_geneRequest"/>
+ <output message="typens:get_reverse_best_neighbors_by_geneResponse"/>
+
+ </operation>
+ <operation name="get_paralogs_by_gene">
+ <input message="typens:get_paralogs_by_geneRequest"/>
+ <output message="typens:get_paralogs_by_geneResponse"/>
+ </operation>
+<!-- MOTIF -->
+ <operation name="get_motifs_by_gene">
+ <input message="typens:get_motifs_by_geneRequest"/>
+ <output message="typens:get_motifs_by_geneResponse"/>
+
+ </operation>
+ <operation name="get_genes_by_motifs">
+ <input message="typens:get_genes_by_motifsRequest"/>
+ <output message="typens:get_genes_by_motifsResponse"/>
+ </operation>
+<!-- KO,OC,PC -->
+ <operation name="get_ko_by_gene">
+ <input message="typens:get_ko_by_geneRequest"/>
+ <output message="typens:get_ko_by_geneResponse"/>
+
+ </operation>
+ <operation name="get_ko_by_ko_class">
+ <input message="typens:get_ko_by_ko_classRequest"/>
+ <output message="typens:get_ko_by_ko_classResponse"/>
+ </operation>
+ <operation name="get_genes_by_ko">
+ <input message="typens:get_genes_by_koRequest"/>
+ <output message="typens:get_genes_by_koResponse"/>
+ </operation>
+
+ <operation name="get_genes_by_ko_class">
+ <input message="typens:get_genes_by_ko_classRequest"/>
+ <output message="typens:get_genes_by_ko_classResponse"/>
+ </operation>
+<!--
+ <operation name="get_oc_members_by_gene">
+ <input message="typens:get_oc_members_by_geneRequest"/>
+ <output message="typens:get_oc_members_by_geneResponse"/>
+ </operation>
+-->
+<!--
+ <operation name="get_pc_members_by_gene">
+ <input message="typens:get_pc_members_by_geneRequest"/>
+ <output message="typens:get_pc_members_by_geneResponse"/>
+ </operation>
+-->
+<!-- PATHWAY -->
+<!-- Coloring pathways -->
+ <operation name="get_elements_by_pathway">
+ <input message="typens:get_elements_by_pathwayRequest"/>
+ <output message="typens:get_elements_by_pathwayResponse"/>
+
+ </operation>
+ <operation name="get_element_relations_by_pathway">
+ <input message="typens:get_element_relations_by_pathwayRequest"/>
+ <output message="typens:get_element_relations_by_pathwayResponse"/>
+ </operation>
+ <operation name="color_pathway_by_elements">
+ <input message="typens:color_pathway_by_elementsRequest"/>
+ <output message="typens:color_pathway_by_elementsResponse"/>
+ </operation>
+
+ <operation name="get_html_of_colored_pathway_by_elements">
+ <input message="typens:get_html_of_colored_pathway_by_elementsRequest"/>
+ <output message="typens:get_html_of_colored_pathway_by_elementsResponse"/>
+ </operation>
+
+ <operation name="mark_pathway_by_objects">
+ <input message="typens:mark_pathway_by_objectsRequest"/>
+ <output message="typens:mark_pathway_by_objectsResponse"/>
+ </operation>
+
+ <operation name="color_pathway_by_objects">
+ <input message="typens:color_pathway_by_objectsRequest"/>
+ <output message="typens:color_pathway_by_objectsResponse"/>
+ </operation>
+ <operation name="get_html_of_marked_pathway_by_objects">
+ <input message="typens:get_html_of_marked_pathway_by_objectsRequest"/>
+ <output message="typens:get_html_of_marked_pathway_by_objectsResponse"/>
+ </operation>
+ <operation name="get_html_of_colored_pathway_by_objects">
+
+ <input message="typens:get_html_of_colored_pathway_by_objectsRequest"/>
+ <output message="typens:get_html_of_colored_pathway_by_objectsResponse"/>
+ </operation>
+<!-- Objects on the pathway -->
+ <operation name="get_genes_by_pathway">
+ <input message="typens:get_genes_by_pathwayRequest"/>
+ <output message="typens:get_genes_by_pathwayResponse"/>
+ </operation>
+ <operation name="get_enzymes_by_pathway">
+
+ <input message="typens:get_enzymes_by_pathwayRequest"/>
+ <output message="typens:get_enzymes_by_pathwayResponse"/>
+ </operation>
+ <operation name="get_reactions_by_pathway">
+ <input message="typens:get_reactions_by_pathwayRequest"/>
+ <output message="typens:get_reactions_by_pathwayResponse"/>
+ </operation>
+<!-- Pathways by objects -->
+ <operation name="get_pathways_by_genes">
+
+ <input message="typens:get_pathways_by_genesRequest"/>
+ <output message="typens:get_pathways_by_genesResponse"/>
+ </operation>
+ <operation name="get_pathways_by_enzymes">
+ <input message="typens:get_pathways_by_enzymesRequest"/>
+ <output message="typens:get_pathways_by_enzymesResponse"/>
+ </operation>
+ <operation name="get_pathways_by_reactions">
+ <input message="typens:get_pathways_by_reactionsRequest"/>
+
+ <output message="typens:get_pathways_by_reactionsResponse"/>
+ </operation>
+<!-- Mutual transformation of objects -->
+<!-- Realtion among pathways -->
+ <operation name="get_linked_pathways">
+ <input message="typens:get_linked_pathwaysRequest"/>
+ <output message="typens:get_linked_pathwaysResponse"/>
+ </operation>
+<!-- Realtion among genes and enzymes -->
+ <operation name="get_genes_by_enzyme">
+
+ <input message="typens:get_genes_by_enzymeRequest"/>
+ <output message="typens:get_genes_by_enzymeResponse"/>
+ </operation>
+ <operation name="get_enzymes_by_gene">
+ <input message="typens:get_enzymes_by_geneRequest"/>
+ <output message="typens:get_enzymes_by_geneResponse"/>
+ </operation>
+<!-- Realtion among enzymes, compounds and reactions -->
+ <operation name="get_enzymes_by_reaction">
+
+ <input message="typens:get_enzymes_by_reactionRequest"/>
+ <output message="typens:get_enzymes_by_reactionResponse"/>
+ </operation>
+ <operation name="get_reactions_by_enzyme">
+ <input message="typens:get_reactions_by_enzymeRequest"/>
+ <output message="typens:get_reactions_by_enzymeResponse"/>
+ </operation>
+<!-- GENES -->
+ <operation name="get_genes_by_organism">
+
+ <input message="typens:get_genes_by_organismRequest"/>
+ <output message="typens:get_genes_by_organismResponse"/>
+ </operation>
+<!-- GENOME -->
+ <operation name="get_number_of_genes_by_organism">
+ <input message="typens:get_number_of_genes_by_organismRequest"/>
+ <output message="typens:get_number_of_genes_by_organismResponse"/>
+ </operation>
+<!-- LIGAND -->
+ <operation name="get_reactions_by_glycan">
+
+ <input message="typens:get_reactions_by_glycanRequest"/>
+ <output message="typens:get_reactions_by_glycanResponse"/>
+ </operation>
+ <operation name="get_reactions_by_compound">
+ <input message="typens:get_reactions_by_compoundRequest"/>
+ <output message="typens:get_reactions_by_compoundResponse"/>
+ </operation>
+ <operation name="get_enzymes_by_glycan">
+ <input message="typens:get_enzymes_by_glycanRequest"/>
+
+ <output message="typens:get_enzymes_by_glycanResponse"/>
+ </operation>
+ <operation name="get_enzymes_by_compound">
+ <input message="typens:get_enzymes_by_compoundRequest"/>
+ <output message="typens:get_enzymes_by_compoundResponse"/>
+ </operation>
+ <operation name="get_pathways_by_compounds">
+ <input message="typens:get_pathways_by_compoundsRequest"/>
+ <output message="typens:get_pathways_by_compoundsResponse"/>
+
+ </operation>
+ <operation name="get_pathways_by_glycans">
+ <input message="typens:get_pathways_by_glycansRequest"/>
+ <output message="typens:get_pathways_by_glycansResponse"/>
+ </operation>
+ <operation name="get_compounds_by_pathway">
+ <input message="typens:get_compounds_by_pathwayRequest"/>
+ <output message="typens:get_compounds_by_pathwayResponse"/>
+ </operation>
+
+ <operation name="get_glycans_by_pathway">
+ <input message="typens:get_glycans_by_pathwayRequest"/>
+ <output message="typens:get_glycans_by_pathwayResponse"/>
+ </operation>
+ <operation name="get_compounds_by_reaction">
+ <input message="typens:get_compounds_by_reactionRequest"/>
+ <output message="typens:get_compounds_by_reactionResponse"/>
+ </operation>
+ <operation name="get_glycans_by_reaction">
+
+ <input message="typens:get_glycans_by_reactionRequest"/>
+ <output message="typens:get_glycans_by_reactionResponse"/>
+ </operation>
+ <operation name="get_compounds_by_enzyme">
+ <input message="typens:get_compounds_by_enzymeRequest"/>
+ <output message="typens:get_compounds_by_enzymeResponse"/>
+ </operation>
+ <operation name="get_glycans_by_enzyme">
+ <input message="typens:get_glycans_by_enzymeRequest"/>
+
+ <output message="typens:get_glycans_by_enzymeResponse"/>
+ </operation>
+ <operation name="convert_mol_to_kcf">
+ <input message="typens:convert_mol_to_kcfRequest"/>
+ <output message="typens:convert_mol_to_kcfResponse"/>
+ </operation>
+ <operation name="get_kos_by_pathway">
+ <input message="typens:get_kos_by_pathwayRequest"/>
+ <output message="typens:get_kos_by_pathwayResponse"/>
+
+ </operation>
+ <operation name="get_pathways_by_kos">
+ <input message="typens:get_pathways_by_kosRequest"/>
+ <output message="typens:get_pathways_by_kosResponse"/>
+ </operation>
+<!-- v6.0 -->
+ <operation name="search_compounds_by_name">
+ <input message="typens:search_compounds_by_nameRequest"/>
+ <output message="typens:search_compounds_by_nameResponse"/>
+
+ </operation>
+ <operation name="search_glycans_by_name">
+ <input message="typens:search_glycans_by_nameRequest"/>
+ <output message="typens:search_glycans_by_nameResponse"/>
+ </operation>
+ <operation name="search_compounds_by_composition">
+ <input message="typens:search_compounds_by_compositionRequest"/>
+ <output message="typens:search_compounds_by_compositionResponse"/>
+ </operation>
+
+ <operation name="search_compounds_by_mass">
+ <input message="typens:search_compounds_by_massRequest"/>
+ <output message="typens:search_compounds_by_massResponse"/>
+ </operation>
+ <operation name="search_glycans_by_mass">
+ <input message="typens:search_glycans_by_massRequest"/>
+ <output message="typens:search_glycans_by_massResponse"/>
+ </operation>
+ <operation name="search_glycans_by_composition">
+
+ <input message="typens:search_glycans_by_compositionRequest"/>
+ <output message="typens:search_glycans_by_compositionResponse"/>
+ </operation>
+ <operation name="search_compounds_by_subcomp">
+ <input message="typens:search_compounds_by_subcompRequest"/>
+ <output message="typens:search_compounds_by_subcompResponse"/>
+ </operation>
+ <operation name="search_glycans_by_kcam">
+ <input message="typens:search_glycans_by_kcamRequest"/>
+
+ <output message="typens:search_glycans_by_kcamResponse"/>
+ </operation>
+ <operation name="get_linkdb_between_databases">
+ <input message="typens:get_linkdb_between_databasesRequest"/>
+ <output message="typens:get_linkdb_between_databasesResponse"/>
+ </operation>
+
+<!-- v6.1 -->
+ <operation name="search_drugs_by_name">
+ <input message="typens:search_drugs_by_nameRequest"/>
+
+ <output message="typens:search_drugs_by_nameResponse"/>
+ </operation>
+ <operation name="search_drugs_by_composition">
+ <input message="typens:search_drugs_by_compositionRequest"/>
+ <output message="typens:search_drugs_by_compositionResponse"/>
+ </operation>
+ <operation name="search_drugs_by_mass">
+ <input message="typens:search_drugs_by_massRequest"/>
+ <output message="typens:search_drugs_by_massResponse"/>
+
+ </operation>
+ <operation name="search_drugs_by_subcomp">
+ <input message="typens:search_drugs_by_subcompRequest"/>
+ <output message="typens:search_drugs_by_subcompResponse"/>
+ </operation>
+
+ </portType>
+
+
+ <binding name="KEGGBinding" type="typens:KEGGPortType">
+
+ <soap:binding style="rpc" transport="http://schemas.xmlsoap.org/soap/http"/>
+<!-- KEGG information -->
+ <operation name="list_databases">
+ <soap:operation soapAction="SOAP/KEGG#list_databases"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+ <operation name="list_organisms">
+ <soap:operation soapAction="SOAP/KEGG#list_organisms"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+ <operation name="list_pathways">
+ <soap:operation soapAction="SOAP/KEGG#list_pathways"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+ <operation name="list_ko_classes">
+ <soap:operation soapAction="SOAP/KEGG#list_ko_classes"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+<!-- DBGET -->
+ <operation name="binfo">
+ <soap:operation soapAction="SOAP/KEGG#binfo"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="bget">
+ <soap:operation soapAction="SOAP/KEGG#bget"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="bfind">
+ <soap:operation soapAction="SOAP/KEGG#bfind"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="btit">
+ <soap:operation soapAction="SOAP/KEGG#btit"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="bconv">
+ <soap:operation soapAction="SOAP/KEGG#bconv"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!-- LinkDB -->
+ <operation name="get_linkdb_by_entry">
+ <soap:operation soapAction="SOAP/KEGG#get_linkdb_by_entry"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!-- SSDB -->
+ <operation name="get_best_neighbors_by_gene">
+ <soap:operation soapAction="SOAP/KEGG#get_best_neighbors_by_gene"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_best_best_neighbors_by_gene">
+ <soap:operation soapAction="SOAP/KEGG#get_best_best_neighbors_by_gene"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_reverse_best_neighbors_by_gene">
+ <soap:operation soapAction="SOAP/KEGG#get_reverse_best_neighbors_by_gene"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_paralogs_by_gene">
+ <soap:operation soapAction="SOAP/KEGG#get_paralogs_by_gene"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!-- MOTIF -->
+ <operation name="get_motifs_by_gene">
+ <soap:operation soapAction="SOAP/KEGG#get_motifs_by_gene"/>
+ <input>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_genes_by_motifs">
+ <soap:operation soapAction="SOAP/KEGG#get_genes_by_motifs"/>
+ <input>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!-- KO,OC,PC -->
+ <operation name="get_ko_by_gene">
+ <soap:operation soapAction="SOAP/KEGG#get_ko_by_gene"/>
+
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_ko_by_ko_class">
+ <soap:operation soapAction="SOAP/KEGG#get_ko_by_ko_class"/>
+
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_genes_by_ko">
+ <soap:operation soapAction="SOAP/KEGG#get_genes_by_ko"/>
+
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_genes_by_ko_class">
+ <soap:operation soapAction="SOAP/KEGG#get_genes_by_ko_class"/>
+
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!--
+ <operation name="get_oc_members_by_gene">
+ <soap:operation soapAction="SOAP/KEGG#get_oc_members_by_gene"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+-->
+<!--
+ <operation name="get_pc_members_by_gene">
+ <soap:operation soapAction="SOAP/KEGG#get_pc_members_by_gene"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+-->
+<!-- PATHWAY -->
+
+<!-- Coloring pathways -->
+ <operation name="get_elements_by_pathway">
+ <soap:operation soapAction="SOAP/KEGG#get_elements_by_pathway"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="get_element_relations_by_pathway">
+ <soap:operation soapAction="SOAP/KEGG#get_element_relations_by_pathway"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="color_pathway_by_elements">
+ <soap:operation soapAction="SOAP/KEGG#color_pathway_by_elements"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="get_html_of_colored_pathway_by_elements">
+ <soap:operation soapAction="SOAP/KEGG#get_html_of_colored_pathway_by_elements"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+
+ <operation name="mark_pathway_by_objects">
+ <soap:operation soapAction="SOAP/KEGG#mark_pathway_by_objects"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+ <operation name="color_pathway_by_objects">
+ <soap:operation soapAction="SOAP/KEGG#color_pathway_by_objects"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+ <operation name="get_html_of_marked_pathway_by_objects">
+ <soap:operation soapAction="SOAP/KEGG#get_html_of_marked_pathway_by_objects"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+ <operation name="get_html_of_colored_pathway_by_objects">
+ <soap:operation soapAction="SOAP/KEGG#get_html_of_colored_pathway_by_objects"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+<!-- Objects on the pathway -->
+ <operation name="get_genes_by_pathway">
+ <soap:operation soapAction="SOAP/KEGG#get_genes_by_pathway"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_enzymes_by_pathway">
+ <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_pathway"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_reactions_by_pathway">
+ <soap:operation soapAction="SOAP/KEGG#get_reactions_by_pathway"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!-- Pathways by object -->
+ <operation name="get_pathways_by_genes">
+ <soap:operation soapAction="SOAP/KEGG#get_pathways_by_genes"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_pathways_by_enzymes">
+ <soap:operation soapAction="SOAP/KEGG#get_pathways_by_enzymes"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_pathways_by_reactions">
+ <soap:operation soapAction="SOAP/KEGG#get_pathways_by_reactions"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!-- Mutual transformation of objects -->
+ <operation name="get_linked_pathways">
+ <soap:operation soapAction="SOAP/KEGG#get_linked_pathways"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_genes_by_enzyme">
+ <soap:operation soapAction="SOAP/KEGG#get_genes_by_enzyme"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_enzymes_by_gene">
+ <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_gene"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_enzymes_by_reaction">
+ <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_reaction"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_reactions_by_enzyme">
+ <soap:operation soapAction="SOAP/KEGG#get_reactions_by_enzyme"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!-- GENES -->
+ <operation name="get_genes_by_organism">
+ <soap:operation soapAction="SOAP/KEGG#get_genes_by_organism"/>
+ <input>
+
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!-- GENOME -->
+ <operation name="get_number_of_genes_by_organism">
+ <soap:operation soapAction="SOAP/KEGG#get_number_of_genes_by_organism"/>
+
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+<!-- LIGAND -->
+ <operation name="get_reactions_by_glycan">
+
+ <soap:operation soapAction="SOAP/KEGG#get_reactions_by_glycan"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_reactions_by_compound">
+
+ <soap:operation soapAction="SOAP/KEGG#get_reactions_by_compound"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_enzymes_by_glycan">
+
+ <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_glycan"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_enzymes_by_compound">
+
+ <soap:operation soapAction="SOAP/KEGG#get_enzymes_by_compound"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_pathways_by_compounds">
+
+ <soap:operation soapAction="SOAP/KEGG#get_pathways_by_compounds"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_pathways_by_glycans">
+
+ <soap:operation soapAction="SOAP/KEGG#get_pathways_by_glycans"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_compounds_by_pathway">
+
+ <soap:operation soapAction="SOAP/KEGG#get_compounds_by_pathway"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_glycans_by_pathway">
+
+ <soap:operation soapAction="SOAP/KEGG#get_glycans_by_pathway"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_compounds_by_reaction">
+
+ <soap:operation soapAction="SOAP/KEGG#get_compounds_by_reaction"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_glycans_by_reaction">
+
+ <soap:operation soapAction="SOAP/KEGG#get_glycans_by_reaction"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_compounds_by_enzyme">
+
+ <soap:operation soapAction="SOAP/KEGG#get_compounds_by_enzyme"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_glycans_by_enzyme">
+
+ <soap:operation soapAction="SOAP/KEGG#get_glycans_by_enzyme"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="convert_mol_to_kcf">
+
+ <soap:operation soapAction="SOAP/KEGG#convert_mol_to_kcf"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_kos_by_pathway">
+
+ <soap:operation soapAction="SOAP/KEGG#get_kos_by_pathway"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+ <operation name="get_pathways_by_kos">
+
+ <soap:operation soapAction="SOAP/KEGG#get_pathways_by_kos"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+ </operation>
+
+<!-- v6.0 -->
+ <operation name="search_compounds_by_name">
+ <soap:operation soapAction="SOAP/KEGG#search_compounds_by_name"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="search_glycans_by_name">
+ <soap:operation soapAction="SOAP/KEGG#search_glycans_by_name"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="search_compounds_by_composition">
+ <soap:operation soapAction="SOAP/KEGG#search_compounds_by_composition"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="search_compounds_by_mass">
+ <soap:operation soapAction="SOAP/KEGG#search_compounds_by_mass"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="search_glycans_by_mass">
+ <soap:operation soapAction="SOAP/KEGG#search_glycans_by_mass"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="search_glycans_by_composition">
+ <soap:operation soapAction="SOAP/KEGG#search_glycans_by_composition"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="search_compounds_by_subcomp">
+ <soap:operation soapAction="SOAP/KEGG#search_compounds_by_subcomp"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="search_glycans_by_kcam">
+ <soap:operation soapAction="SOAP/KEGG#search_glycans_by_kcam"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+ <operation name="get_linkdb_between_databases">
+ <soap:operation soapAction="SOAP/KEGG#get_linkdb_between_databases"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </output>
+
+ </operation>
+
+<!-- v6.1 -->
+ <operation name="search_drugs_by_name">
+ <soap:operation soapAction="SOAP/KEGG#search_drugs_by_name"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+ <operation name="search_drugs_by_composition">
+ <soap:operation soapAction="SOAP/KEGG#search_drugs_by_composition"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+ <operation name="search_drugs_by_mass">
+ <soap:operation soapAction="SOAP/KEGG#search_drugs_by_mass"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+ <operation name="search_drugs_by_subcomp">
+ <soap:operation soapAction="SOAP/KEGG#search_drugs_by_subcomp"/>
+ <input>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+ </input>
+ <output>
+ <soap:body use="encoded" namespace="SOAP/KEGG" encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"/>
+
+ </output>
+ </operation>
+
+ </binding>
+
+ <service name="KEGG">
+ <port name="KEGGPort" binding="typens:KEGGBinding">
+ <soap:address location="http://soap.genome.jp/keggapi/request_v6.1.cgi"/>
+ </port>
+ </service>
+
+</definitions>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/54050685/taverna-xpath-activity-ui/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-xpath-activity-ui/pom.xml b/taverna-xpath-activity-ui/pom.xml
new file mode 100644
index 0000000..53b81ee
--- /dev/null
+++ b/taverna-xpath-activity-ui/pom.xml
@@ -0,0 +1,68 @@
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+ <parent>
+ <groupId>net.sf.taverna</groupId>
+ <artifactId>taverna-parent</artifactId>
+ <version>3.0.1-SNAPSHOT</version>
+ </parent>
+ <groupId>net.sf.taverna.t2.ui-activities</groupId>
+ <artifactId>xpath-activity-ui</artifactId>
+ <version>2.0-SNAPSHOT</version>
+ <packaging>bundle</packaging>
+ <name>XPath Activity - UI bindings</name>
+ <dependencies>
+ <dependency>
+ <groupId>net.sf.taverna.t2.activities</groupId>
+ <artifactId>xpath-activity</artifactId>
+ <version>${t2.activities.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.taverna.t2.ui-api</groupId>
+ <artifactId>activity-icons-api</artifactId>
+ <version>${t2.ui.api.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.taverna.t2.ui-api</groupId>
+ <artifactId>contextual-views-api</artifactId>
+ <version>${t2.ui.api.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.taverna.t2.ui-api</groupId>
+ <artifactId>menu-api</artifactId>
+ <version>${t2.ui.api.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.taverna.t2.ui-api</groupId>
+ <artifactId>report-api</artifactId>
+ <version>${t2.ui.api.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.taverna.t2.ui-components</groupId>
+ <artifactId>workflow-view</artifactId>
+ <version>${t2.ui.components.version}</version>
+ </dependency>
+ </dependencies>
+
+ <repositories>
+ <repository>
+ <releases />
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <id>mygrid-repository</id>
+ <name>myGrid Repository</name>
+ <url>http://www.mygrid.org.uk/maven/repository
+ </url>
+ </repository>
+ <repository>
+ <releases>
+ <enabled>false</enabled>
+ </releases>
+ <snapshots />
+ <id>mygrid-snapshot-repository</id>
+ <name>myGrid Snapshot Repository</name>
+ <url>http://www.mygrid.org.uk/maven/snapshot-repository</url>
+ </repository>
+ </repositories>
+</project>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench-common-activities/blob/54050685/taverna-xpath-activity-ui/src/main/java/net/sf/taverna/t2/activities/xpath/ui/config/TwoFieldQueryPanel.java
----------------------------------------------------------------------
diff --git a/taverna-xpath-activity-ui/src/main/java/net/sf/taverna/t2/activities/xpath/ui/config/TwoFieldQueryPanel.java b/taverna-xpath-activity-ui/src/main/java/net/sf/taverna/t2/activities/xpath/ui/config/TwoFieldQueryPanel.java
new file mode 100644
index 0000000..d0f131a
--- /dev/null
+++ b/taverna-xpath-activity-ui/src/main/java/net/sf/taverna/t2/activities/xpath/ui/config/TwoFieldQueryPanel.java
@@ -0,0 +1,110 @@
+package net.sf.taverna.t2.activities.xpath.ui.config;
+
+import java.awt.GridBagConstraints;
+import java.awt.GridBagLayout;
+import java.awt.Insets;
+
+import javax.swing.BorderFactory;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.JTextField;
+
+/**
+ * Auxiliary class that creates a JPanel with two labels and two text fields.
+ *
+ * It can be used to be placed into a dialog made by JOptionPane to get two
+ * input values, not just one.
+ *
+ * @author Sergejs Aleksejevs
+ */
+public class TwoFieldQueryPanel extends JPanel {
+ private JTextField tfFirstValue;
+ private JTextField tfSecondValue;
+
+ public TwoFieldQueryPanel(String firstFieldName, String secondFieldName) {
+ this(null, firstFieldName, null, secondFieldName, null);
+ }
+
+ public TwoFieldQueryPanel(String message, String firstFieldName,
+ String secondFieldName) {
+ this(message, firstFieldName, null, secondFieldName, null);
+ }
+
+ public TwoFieldQueryPanel(String firstFieldName,
+ String firstFieldDefaultValue, String secondFieldName,
+ String secondFieldDefaultValue) {
+ this(null, firstFieldName, firstFieldDefaultValue, secondFieldName,
+ secondFieldDefaultValue);
+ }
+
+ public TwoFieldQueryPanel(String message, String firstFieldName,
+ String firstFieldDefaultValue, String secondFieldName,
+ String secondFieldDefaultValue) {
+ super();
+ this.setBorder(BorderFactory.createEmptyBorder(5, 5, 5, 5));
+
+ this.setLayout(new GridBagLayout());
+ GridBagConstraints c = new GridBagConstraints();
+
+ c.gridx = 0;
+ c.gridy = 0;
+ c.weightx = 0;
+ c.fill = GridBagConstraints.HORIZONTAL;
+ c.anchor = GridBagConstraints.WEST;
+ c.insets = new Insets(3, 5, 3, 5);
+
+ if (message != null && message.length() > 0) {
+ c.gridwidth = 2;
+ c.insets = new Insets(5, 5, 15, 5);
+ this.add(new JLabel(message), c);
+
+ c.gridwidth = 1;
+ c.gridx = 0;
+ c.gridy++;
+ c.insets = new Insets(3, 5, 3, 5);
+ }
+
+ this.add(new JLabel(firstFieldName), c);
+
+ c.gridx++;
+ c.weightx = 1.0;
+ tfFirstValue = new JTextField(20);
+ if (firstFieldDefaultValue != null) {
+ tfFirstValue.setText(firstFieldDefaultValue);
+ }
+ tfFirstValue.selectAll();
+ tfFirstValue.requestFocusInWindow();
+ this.add(tfFirstValue, c);
+
+ c.gridx = 0;
+ c.gridy++;
+ c.weightx = 0;
+ this.add(new JLabel(secondFieldName), c);
+
+ c.gridx++;
+ c.weightx = 1.0;
+ tfSecondValue = new JTextField(20);
+ if (secondFieldDefaultValue != null) {
+ tfSecondValue.setText(secondFieldDefaultValue);
+ }
+ tfSecondValue.selectAll();
+ this.add(tfSecondValue, c);
+ }
+
+ /**
+ * @return Trimmed value from the first text field. Guaranteed to be
+ * non-null.
+ */
+ public String getFirstValue() {
+ return (tfFirstValue.getText().trim());
+ }
+
+ /**
+ * @return Trimmed value from the second text field. Guaranteed to be
+ * non-null.
+ */
+ public String getSecondValue() {
+ return (tfSecondValue.getText().trim());
+ }
+
+}