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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2013/06/12 20:18:39 UTC
Build failed in Jenkins: ctakes-trunk-compiletest #293
See <https://builds.apache.org/job/ctakes-trunk-compiletest/293/changes>
Changes:
[clin] ctakes-temporal: change liblinear c parameter to 0.1 for constituent-based time annotator.
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[...truncated 6776 lines...]
[not identical] Expected attribute value '12498' but was '12533' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _id="12498"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _id="12533"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_id
[not identical] Expected attribute value '12495' but was '12530' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _ref_ontologyConceptArr="12495"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _ref_ontologyConceptArr="12530"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_ref_ontologyConceptArr
[not identical] Expected sequence of child nodes '3867' but was '3869' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1] to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]
[not identical] Expected attribute value '12535' but was '12570' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _id="12535"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _id="12570"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_id
[not identical] Expected attribute value '12532' but was '12567' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _ref_ontologyConceptArr="12532"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _ref_ontologyConceptArr="12567"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_ref_ontologyConceptArr
[not identical] Expected sequence of child nodes '3869' but was '3871' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1] to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]
[not identical] Expected attribute value '12574' but was '12609' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _id="12574"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _id="12609"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_id
[not identical] Expected attribute value '12571' but was '12606' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _ref_ontologyConceptArr="12571"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _ref_ontologyConceptArr="12606"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_ref_ontologyConceptArr
[not identical] Expected sequence of child nodes '3871' but was '3873' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1] to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]
[not identical] Expected attribute value '12602' but was '12448' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _id="12602"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _id="12448"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_id
[not identical] Expected attribute value '12594' but was '12440' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _ref_ontologyConceptArr="12594"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _ref_ontologyConceptArr="12440"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_ref_ontologyConceptArr
[not identical] Expected sequence of child nodes '3873' but was '3865' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1] to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]
[not identical] Expected attribute value '12458' but was '12493' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12458"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12493"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@_ref_content
[not identical] Expected attribute value '47' but was '0' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="47"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="0"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@id
[not identical] Expected attribute value '12498' but was '12533' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12498"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12533"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@_ref_content
[not identical] Expected attribute value '48' but was '1' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="48"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="1"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@id
[not identical] Expected attribute value '12602' but was '12448' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12602"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12448"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@_ref_content
[not identical] Expected attribute value '49' but was '2' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="49"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="2"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@id
[not identical] Expected attribute value '12574' but was '12609' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12574"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12609"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@_ref_content
[not identical] Expected attribute value '50' but was '3' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="50"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="3"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@id
[not identical] Expected attribute value '12535' but was '12570' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12535"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12570"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@_ref_content
[not identical] Expected attribute value '51' but was '4' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="51"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="4"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@id
[not identical] Expected attribute value '12597' but was '12443' - comparing <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="12597"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]/@_id to <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="12443"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]/@_id
[not identical] Expected sequence of child nodes '5047' but was '5065' - comparing <org.apache.ctakes.typesystem.type.refsem.OntologyConcept...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1] to <org.apache.ctakes.typesystem.type.refsem.OntologyConcept...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]
[not identical] Expected attribute value '12594' but was '12606' - comparing <uima.cas.FSArray _id="12594"...> at /CAS[1]/uima.cas.FSArray[147]/@_id to <uima.cas.FSArray _id="12606"...> at /CAS[1]/uima.cas.FSArray[147]/@_id
[not identical] Expected text value '12597' but was '12599' - comparing <i ...>12597</i> at /CAS[1]/uima.cas.FSArray[147]/i[1]/text()[1] to <i ...>12599</i> at /CAS[1]/uima.cas.FSArray[147]/i[1]/text()[1]
[not identical] Expected attribute value '12564' but was '12560' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12564"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@_id to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12560"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@_id
[not identical] Expected attribute value '100002' but was '100206' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100002"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@code to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@code
[not identical] Expected attribute value 'Cui0002' but was 'Cui0206' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0002"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@cui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@cui
[not identical] Expected attribute value '100002#SNOMED' but was '100206#SNOMED' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100002#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@oid to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100206#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@oid
[not identical] Expected attribute value 'T_AS' but was 'T_SS' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_AS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@tui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_SS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@tui
[not identical] Expected attribute value '12571' but was '12567' - comparing <uima.cas.FSArray _id="12571"...> at /CAS[1]/uima.cas.FSArray[148]/@_id to <uima.cas.FSArray _id="12567"...> at /CAS[1]/uima.cas.FSArray[148]/@_id
[not identical] Expected text value '12564' but was '12560' - comparing <i ...>12564</i> at /CAS[1]/uima.cas.FSArray[148]/i[1]/text()[1] to <i ...>12560</i> at /CAS[1]/uima.cas.FSArray[148]/i[1]/text()[1]
[not identical] Expected attribute value '12525' but was '12523' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12525"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@_id to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12523"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@_id
[not identical] Expected attribute value '100206' but was '100102' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@code to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@code
[not identical] Expected attribute value 'Cui0206' but was 'Cui0102' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@cui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@cui
[not identical] Expected attribute value '100206#SNOMED' but was '100102#SNOMED' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100206#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@oid to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100102#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@oid
[not identical] Expected attribute value 'T_SS' but was 'T_PR' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_SS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@tui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_PR"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@tui
[not identical] Expected attribute value '12532' but was '12530' - comparing <uima.cas.FSArray _id="12532"...> at /CAS[1]/uima.cas.FSArray[149]/@_id to <uima.cas.FSArray _id="12530"...> at /CAS[1]/uima.cas.FSArray[149]/@_id
[not identical] Expected text value '12525' but was '12523' - comparing <i ...>12525</i> at /CAS[1]/uima.cas.FSArray[149]/i[1]/text()[1] to <i ...>12523</i> at /CAS[1]/uima.cas.FSArray[149]/i[1]/text()[1]
[not identical] Expected attribute value '12488' but was '12482' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12488"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@_id to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12482"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@_id
[not identical] Expected attribute value '100102' but was '200309' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@code to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="200309"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@code
[not identical] Expected attribute value 'Cui0102' but was 'Cui0309' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@cui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0309"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@cui
[not identical] Expected attribute value '100102#SNOMED' but was '200309#SNOMED' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100102#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@oid to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="200309#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@oid
[not identical] Expected attribute value 'T_PR' but was 'T_DD' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_PR"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@tui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_DD"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@tui
[not identical] Expected attribute value '12495' but was '12489' - comparing <uima.cas.FSArray _id="12495"...> at /CAS[1]/uima.cas.FSArray[150]/@_id to <uima.cas.FSArray _id="12489"...> at /CAS[1]/uima.cas.FSArray[150]/@_id
[not identical] Expected attribute value '1' but was '2' - comparing <uima.cas.FSArray size="1"...> at /CAS[1]/uima.cas.FSArray[150]/@size to <uima.cas.FSArray size="2"...> at /CAS[1]/uima.cas.FSArray[150]/@size
[different] Expected number of child nodes '3' but was '5' - comparing <uima.cas.FSArray...> at /CAS[1]/uima.cas.FSArray[150] to <uima.cas.FSArray...> at /CAS[1]/uima.cas.FSArray[150]
at junit.framework.Assert.fail(Assert.java:50)
at junit.framework.Assert.assertTrue(Assert.java:20)
at org.apache.ctakes.regression.test.RegressionPipelineTest.compareXMLOutput(RegressionPipelineTest.java:148)
at org.apache.ctakes.regression.test.RegressionPipelineTest$StatusCallbackListenerImpl.collectionProcessComplete(RegressionPipelineTest.java:201)
at org.apache.uima.collection.impl.cpm.BaseCPMImpl.run(BaseCPMImpl.java:538)
at java.lang.Thread.run(Thread.java:662)
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.183s]
[INFO] Apache cTAKES common type system .................. SUCCESS [8.157s]
[INFO] Apache cTAKES utils ............................... SUCCESS [2.219s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [0.712s]
[INFO] Apache cTAKES core ................................ SUCCESS [6.549s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [0.887s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [3.115s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [0.657s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [2.451s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [1.752s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [0.775s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [8.897s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.116s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [0.710s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [1.237s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [0.673s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [2.155s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [0.917s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [1.582s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [1.116s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [0.615s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [1.575s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [26.450s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [7.265s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [2.843s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [0.667s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [2.583s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [0.654s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [3.262s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [0.868s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [3.334s]
[INFO] Apache cTAKES Resources pad-term-spotter-res ...... SUCCESS [0.944s]
[INFO] Apache cTAKES Pad Term Spotter .................... SUCCESS [3.012s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [1.300s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [0.692s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [1.183s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [7.186s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [0.654s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [10.044s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [2.666s]
[INFO] Apache cTAKES Distribution ........................ SUCCESS [0.906s]
[INFO] Apache cTAKES Regression-test ..................... FAILURE [15:02.511s]
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17:14.958s
[INFO] Finished at: Wed Jun 12 18:18:31 UTC 2013
[INFO] Final Memory: 42M/261M
[INFO] ------------------------------------------------------------------------
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mavenExecutionResult exceptions not empty
message : Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12:test (default-test) on project ctakes-regression-test: Failure or timeout
cause : Failure or timeout
Stack trace :
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12:test (default-test) on project ctakes-regression-test: Failure or timeout
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239)
at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:100)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:66)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
Caused by: org.apache.maven.plugin.MojoExecutionException: Failure or timeout
at org.apache.maven.plugin.surefire.SurefirePlugin.assertNoFailureOrTimeout(SurefirePlugin.java:665)
at org.apache.maven.plugin.surefire.SurefirePlugin.handleSummary(SurefirePlugin.java:646)
at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:137)
at org.apache.maven.plugin.surefire.AbstractSurefireMojo.execute(AbstractSurefireMojo.java:98)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
... 27 more
Sending e-mails to: ctakes-notifications@incubator.apache.org
channel stopped
Build failed in Jenkins: ctakes-trunk-compiletest #294
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/294/>
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[...truncated 6653 lines...]
[not identical] Expected attribute value '12498' but was '12533' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _id="12498"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _id="12533"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_id
[not identical] Expected attribute value '12495' but was '12530' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _ref_ontologyConceptArr="12495"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention _ref_ontologyConceptArr="12530"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]/@_ref_ontologyConceptArr
[not identical] Expected sequence of child nodes '3867' but was '3869' - comparing <org.apache.ctakes.typesystem.type.textsem.ProcedureMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1] to <org.apache.ctakes.typesystem.type.textsem.ProcedureMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.ProcedureMention[1]
[not identical] Expected attribute value '12535' but was '12570' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _id="12535"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _id="12570"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_id
[not identical] Expected attribute value '12532' but was '12567' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _ref_ontologyConceptArr="12532"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention _ref_ontologyConceptArr="12567"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]/@_ref_ontologyConceptArr
[not identical] Expected sequence of child nodes '3869' but was '3871' - comparing <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1] to <org.apache.ctakes.typesystem.type.textsem.SignSymptomMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.SignSymptomMention[1]
[not identical] Expected attribute value '12574' but was '12609' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _id="12574"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _id="12609"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_id
[not identical] Expected attribute value '12571' but was '12606' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _ref_ontologyConceptArr="12571"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention _ref_ontologyConceptArr="12606"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]/@_ref_ontologyConceptArr
[not identical] Expected sequence of child nodes '3871' but was '3873' - comparing <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1] to <org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.AnatomicalSiteMention[1]
[not identical] Expected attribute value '12602' but was '12448' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _id="12602"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_id to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _id="12448"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_id
[not identical] Expected attribute value '12594' but was '12440' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _ref_ontologyConceptArr="12594"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_ref_ontologyConceptArr to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention _ref_ontologyConceptArr="12440"...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]/@_ref_ontologyConceptArr
[not identical] Expected sequence of child nodes '3873' but was '3865' - comparing <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1] to <org.apache.ctakes.typesystem.type.textsem.MedicationEventMention...> at /CAS[1]/org.apache.ctakes.typesystem.type.textsem.MedicationEventMention[1]
[not identical] Expected attribute value '12458' but was '12493' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12458"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12493"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@_ref_content
[not identical] Expected attribute value '47' but was '37' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="47"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="37"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[1]/@id
[not identical] Expected attribute value '12498' but was '12533' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12498"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12533"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@_ref_content
[not identical] Expected attribute value '48' but was '38' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="48"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="38"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[2]/@id
[not identical] Expected attribute value '12602' but was '12448' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12602"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12448"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@_ref_content
[not identical] Expected attribute value '49' but was '39' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="49"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="39"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[3]/@id
[not identical] Expected attribute value '12574' but was '12609' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12574"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12609"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@_ref_content
[not identical] Expected attribute value '50' but was '40' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="50"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="40"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[4]/@id
[not identical] Expected attribute value '12535' but was '12570' - comparing <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12535"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@_ref_content to <org.apache.ctakes.coreference.type.NEMarkable _ref_content="12570"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@_ref_content
[not identical] Expected attribute value '51' but was '41' - comparing <org.apache.ctakes.coreference.type.NEMarkable id="51"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@id to <org.apache.ctakes.coreference.type.NEMarkable id="41"...> at /CAS[1]/org.apache.ctakes.coreference.type.NEMarkable[5]/@id
[not identical] Expected attribute value '12597' but was '12443' - comparing <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="12597"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]/@_id to <org.apache.ctakes.typesystem.type.refsem.OntologyConcept _id="12443"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]/@_id
[not identical] Expected sequence of child nodes '5047' but was '5065' - comparing <org.apache.ctakes.typesystem.type.refsem.OntologyConcept...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1] to <org.apache.ctakes.typesystem.type.refsem.OntologyConcept...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.OntologyConcept[1]
[not identical] Expected attribute value '12594' but was '12606' - comparing <uima.cas.FSArray _id="12594"...> at /CAS[1]/uima.cas.FSArray[147]/@_id to <uima.cas.FSArray _id="12606"...> at /CAS[1]/uima.cas.FSArray[147]/@_id
[not identical] Expected text value '12597' but was '12599' - comparing <i ...>12597</i> at /CAS[1]/uima.cas.FSArray[147]/i[1]/text()[1] to <i ...>12599</i> at /CAS[1]/uima.cas.FSArray[147]/i[1]/text()[1]
[not identical] Expected attribute value '12564' but was '12560' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12564"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@_id to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12560"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@_id
[not identical] Expected attribute value '100002' but was '100206' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100002"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@code to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@code
[not identical] Expected attribute value 'Cui0002' but was 'Cui0206' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0002"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@cui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@cui
[not identical] Expected attribute value '100002#SNOMED' but was '100206#SNOMED' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100002#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@oid to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100206#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@oid
[not identical] Expected attribute value 'T_AS' but was 'T_SS' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_AS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[1]/@tui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_SS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@tui
[not identical] Expected attribute value '12571' but was '12567' - comparing <uima.cas.FSArray _id="12571"...> at /CAS[1]/uima.cas.FSArray[148]/@_id to <uima.cas.FSArray _id="12567"...> at /CAS[1]/uima.cas.FSArray[148]/@_id
[not identical] Expected text value '12564' but was '12560' - comparing <i ...>12564</i> at /CAS[1]/uima.cas.FSArray[148]/i[1]/text()[1] to <i ...>12560</i> at /CAS[1]/uima.cas.FSArray[148]/i[1]/text()[1]
[not identical] Expected attribute value '12525' but was '12523' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12525"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@_id to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12523"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@_id
[not identical] Expected attribute value '100206' but was '100102' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@code to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@code
[not identical] Expected attribute value 'Cui0206' but was 'Cui0102' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0206"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@cui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@cui
[not identical] Expected attribute value '100206#SNOMED' but was '100102#SNOMED' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100206#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@oid to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100102#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@oid
[not identical] Expected attribute value 'T_SS' but was 'T_PR' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_SS"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[2]/@tui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_PR"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@tui
[not identical] Expected attribute value '12532' but was '12530' - comparing <uima.cas.FSArray _id="12532"...> at /CAS[1]/uima.cas.FSArray[149]/@_id to <uima.cas.FSArray _id="12530"...> at /CAS[1]/uima.cas.FSArray[149]/@_id
[not identical] Expected text value '12525' but was '12523' - comparing <i ...>12525</i> at /CAS[1]/uima.cas.FSArray[149]/i[1]/text()[1] to <i ...>12523</i> at /CAS[1]/uima.cas.FSArray[149]/i[1]/text()[1]
[not identical] Expected attribute value '12488' but was '12482' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12488"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@_id to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept _id="12482"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@_id
[not identical] Expected attribute value '100102' but was '200309' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="100102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@code to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept code="200309"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@code
[not identical] Expected attribute value 'Cui0102' but was 'Cui0309' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0102"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@cui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept cui="Cui0309"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@cui
[not identical] Expected attribute value '100102#SNOMED' but was '200309#SNOMED' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="100102#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@oid to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept oid="200309#SNOMED"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@oid
[not identical] Expected attribute value 'T_PR' but was 'T_DD' - comparing <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_PR"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[3]/@tui to <org.apache.ctakes.typesystem.type.refsem.UmlsConcept tui="T_DD"...> at /CAS[1]/org.apache.ctakes.typesystem.type.refsem.UmlsConcept[4]/@tui
[not identical] Expected attribute value '12495' but was '12489' - comparing <uima.cas.FSArray _id="12495"...> at /CAS[1]/uima.cas.FSArray[150]/@_id to <uima.cas.FSArray _id="12489"...> at /CAS[1]/uima.cas.FSArray[150]/@_id
[not identical] Expected attribute value '1' but was '2' - comparing <uima.cas.FSArray size="1"...> at /CAS[1]/uima.cas.FSArray[150]/@size to <uima.cas.FSArray size="2"...> at /CAS[1]/uima.cas.FSArray[150]/@size
[different] Expected number of child nodes '3' but was '5' - comparing <uima.cas.FSArray...> at /CAS[1]/uima.cas.FSArray[150] to <uima.cas.FSArray...> at /CAS[1]/uima.cas.FSArray[150]
at junit.framework.Assert.fail(Assert.java:50)
at junit.framework.Assert.assertTrue(Assert.java:20)
at org.apache.ctakes.regression.test.RegressionPipelineTest.compareXMLOutput(RegressionPipelineTest.java:148)
at org.apache.ctakes.regression.test.RegressionPipelineTest$StatusCallbackListenerImpl.collectionProcessComplete(RegressionPipelineTest.java:201)
at org.apache.uima.collection.impl.cpm.BaseCPMImpl.run(BaseCPMImpl.java:538)
at java.lang.Thread.run(Thread.java:662)
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [24.772s]
[INFO] Apache cTAKES common type system .................. SUCCESS [13.523s]
[INFO] Apache cTAKES utils ............................... SUCCESS [4.227s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.964s]
[INFO] Apache cTAKES core ................................ SUCCESS [14.052s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [3.248s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [6.087s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.346s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.489s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.581s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [2.169s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [19.844s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [1.693s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [2.225s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [2.665s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [1.857s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.810s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.413s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.839s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.570s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.643s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [6.847s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [41.439s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [10.021s]
[INFO] Apache cTAKES CoReference Resolver ................ SUCCESS [4.718s]
[INFO] Apache cTAKES Resources drug-ner .................. SUCCESS [2.064s]
[INFO] Apache cTAKES Drug NER ............................ SUCCESS [4.619s]
[INFO] Apache cTAKES Resources side-effect ............... SUCCESS [2.130s]
[INFO] Apache cTAKES Side Effects ........................ SUCCESS [5.501s]
[INFO] Apache cTAKES Resources smoking-status ............ SUCCESS [2.109s]
[INFO] Apache cTAKES Smoking Status ...................... SUCCESS [5.039s]
[INFO] Apache cTAKES Resources pad-term-spotter-res ...... SUCCESS [1.833s]
[INFO] Apache cTAKES Pad Term Spotter .................... SUCCESS [4.738s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.420s]
[INFO] Apache cTAKES Resources assertion-zoner ........... SUCCESS [1.988s]
[INFO] Apache cTAKES Assertion's zoner ................... SUCCESS [2.924s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [6.664s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [1.459s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [19.262s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [3.869s]
[INFO] Apache cTAKES Distribution ........................ SUCCESS [1.403s]
[INFO] Apache cTAKES Regression-test ..................... FAILURE [15:04.329s]
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 19:31.601s
[INFO] Finished at: Thu Jun 13 15:26:30 UTC 2013
[INFO] Final Memory: 41M/218M
[INFO] ------------------------------------------------------------------------
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mavenExecutionResult exceptions not empty
message : Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12:test (default-test) on project ctakes-regression-test: Failure or timeout
cause : Failure or timeout
Stack trace :
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12:test (default-test) on project ctakes-regression-test: Failure or timeout
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329)
at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239)
at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:100)
at hudson.maven.Maven3Builder.call(Maven3Builder.java:66)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
Caused by: org.apache.maven.plugin.MojoExecutionException: Failure or timeout
at org.apache.maven.plugin.surefire.SurefirePlugin.assertNoFailureOrTimeout(SurefirePlugin.java:665)
at org.apache.maven.plugin.surefire.SurefirePlugin.handleSummary(SurefirePlugin.java:646)
at org.apache.maven.plugin.surefire.AbstractSurefireMojo.executeAfterPreconditionsChecked(AbstractSurefireMojo.java:137)
at org.apache.maven.plugin.surefire.AbstractSurefireMojo.execute(AbstractSurefireMojo.java:98)
at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
... 27 more
Sending e-mails to: ctakes-notifications@incubator.apache.org
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