You are viewing a plain text version of this content. The canonical link for it is here.
Posted to issues@spark.apache.org by "Sean Owen (JIRA)" <ji...@apache.org> on 2015/04/23 23:59:38 UTC
[jira] [Commented] (SPARK-7049) File does not exist in checkpoint
directory
[ https://issues.apache.org/jira/browse/SPARK-7049?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14509913#comment-14509913 ]
Sean Owen commented on SPARK-7049:
----------------------------------
Can you provide any info to reproduce this? there's not much to go on here. Are you setting your streaming cleaner TTL too small?
> File does not exist in checkpoint directory
> -------------------------------------------
>
> Key: SPARK-7049
> URL: https://issues.apache.org/jira/browse/SPARK-7049
> Project: Spark
> Issue Type: Bug
> Components: Streaming
> Affects Versions: 1.3.1
> Reporter: yangping wu
>
> I am using *KafkaUtils.createDirectStream* to read data from kafka topic, and *checkpoint* the data so that it can recovery from failure. But I found that the program sometimes will throw *java.io.FileNotFoundException*, the full stacktrace as follow:
> {code}
> 2015-04-22 13:02:56,462 WARN [task-result-getter-2] - Lost task 33.0 in stage 24658.0 (TID 247175, spark-cluster1): java.io.FileNotFoundException: File does not exist: /user/spark/checkpoint1/10e1ed75-a272-4f5f-99c0-1eb74554c5bd/rdd-25913/part-00033
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1891)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1832)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1812)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1784)
> at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:542)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:362)
> at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:619)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:962)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2039)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2035)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1628)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2033)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
> at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
> at org.apache.hadoop.ipc.RemoteException.instantiateException(RemoteException.java:106)
> at org.apache.hadoop.ipc.RemoteException.unwrapRemoteException(RemoteException.java:73)
> at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1222)
> at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1210)
> at org.apache.hadoop.hdfs.DFSClient.getLocatedBlocks(DFSClient.java:1200)
> at org.apache.hadoop.hdfs.DFSInputStream.fetchLocatedBlocksAndGetLastBlockLength(DFSInputStream.java:271)
> at org.apache.hadoop.hdfs.DFSInputStream.openInfo(DFSInputStream.java:238)
> at org.apache.hadoop.hdfs.DFSInputStream.<init>(DFSInputStream.java:231)
> at org.apache.hadoop.hdfs.DFSClient.open(DFSClient.java:1498)
> at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:302)
> at org.apache.hadoop.hdfs.DistributedFileSystem$3.doCall(DistributedFileSystem.java:298)
> at org.apache.hadoop.fs.FileSystemLinkResolver.resolve(FileSystemLinkResolver.java:81)
> at org.apache.hadoop.hdfs.DistributedFileSystem.open(DistributedFileSystem.java:298)
> at org.apache.spark.rdd.CheckpointRDD$.readFromFile(CheckpointRDD.scala:140)
> at org.apache.spark.rdd.CheckpointRDD.compute(CheckpointRDD.scala:74)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:244)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
> at org.apache.spark.CacheManager.getOrCompute(CacheManager.scala:70)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:242)
> at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:35)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:277)
> at org.apache.spark.CacheManager.getOrCompute(CacheManager.scala:70)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:242)
> at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:61)
> at org.apache.spark.scheduler.Task.run(Task.scala:64)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:203)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:744)
> Caused by: org.apache.hadoop.ipc.RemoteException(java.io.FileNotFoundException): File does not exist: /user/spark/checkpoint1/10e1ed75-a272-4f5f-99c0-1eb74554c5bd/rdd-25913/part-00033
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:66)
> at org.apache.hadoop.hdfs.server.namenode.INodeFile.valueOf(INodeFile.java:56)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsUpdateTimes(FSNamesystem.java:1891)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocationsInt(FSNamesystem.java:1832)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1812)
> at org.apache.hadoop.hdfs.server.namenode.FSNamesystem.getBlockLocations(FSNamesystem.java:1784)
> at org.apache.hadoop.hdfs.server.namenode.NameNodeRpcServer.getBlockLocations(NameNodeRpcServer.java:542)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolServerSideTranslatorPB.getBlockLocations(ClientNamenodeProtocolServerSideTranslatorPB.java:362)
> at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.callBlockingMethod(ClientNamenodeProtocolProtos.java)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine.java:619)
> at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:962)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2039)
> at org.apache.hadoop.ipc.Server$Handler$1.run(Server.java:2035)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.security.auth.Subject.doAs(Subject.java:415)
> at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1628)
> at org.apache.hadoop.ipc.Server$Handler.run(Server.java:2033)
> at org.apache.hadoop.ipc.Client.call(Client.java:1468)
> at org.apache.hadoop.ipc.Client.call(Client.java:1399)
> at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:232)
> at com.sun.proxy.$Proxy21.getBlockLocations(Unknown Source)
> at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getBlockLocations(ClientNamenodeProtocolTranslatorPB.java:254)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:187)
> at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
> at com.sun.proxy.$Proxy22.getBlockLocations(Unknown Source)
> at org.apache.hadoop.hdfs.DFSClient.callGetBlockLocations(DFSClient.java:1220)
> ... 27 more
> {code}
> It looks like that Spark delete some rdd too early. My spark version is 1.3.1, and I found the exception sometimes also appear in spark 1.3.0.
--
This message was sent by Atlassian JIRA
(v6.3.4#6332)
---------------------------------------------------------------------
To unsubscribe, e-mail: issues-unsubscribe@spark.apache.org
For additional commands, e-mail: issues-help@spark.apache.org