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Posted to commits@airavata.apache.org by sa...@apache.org on 2014/04/14 20:31:19 UTC
[77/90] [abbrv] AIRAVATA-1124
http://git-wip-us.apache.org/repos/asf/airavata/blob/9c47eec8/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorEventListener.java
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diff --git a/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorEventListener.java b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorEventListener.java
new file mode 100644
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--- /dev/null
+++ b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorEventListener.java
@@ -0,0 +1,387 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
+package org.apache.airavata.xbaya.interpretor;
+
+import java.io.IOException;
+import java.net.URI;
+import java.util.LinkedList;
+import java.util.List;
+
+import org.apache.airavata.client.api.exception.AiravataAPIInvocationException;
+import org.apache.airavata.common.utils.XMLUtil;
+import org.apache.airavata.registry.api.workflow.NodeExecutionError;
+import org.apache.airavata.workflow.model.graph.EPRPort;
+import org.apache.airavata.workflow.model.graph.Edge;
+import org.apache.airavata.workflow.model.graph.Graph;
+import org.apache.airavata.workflow.model.graph.Node;
+import org.apache.airavata.workflow.model.graph.Node.NodeExecutionState;
+import org.apache.airavata.workflow.model.graph.Port;
+import org.apache.airavata.workflow.model.graph.impl.NodeImpl;
+import org.apache.airavata.workflow.model.graph.system.InputNode;
+import org.apache.airavata.workflow.model.graph.system.OutputNode;
+import org.apache.airavata.workflow.model.graph.util.GraphUtil;
+import org.apache.airavata.workflow.model.graph.ws.WSGraph;
+import org.apache.airavata.workflow.model.wf.Workflow;
+import org.apache.airavata.ws.monitor.EventData;
+import org.apache.airavata.ws.monitor.MonitorException;
+import org.apache.airavata.ws.monitor.MonitorUtil;
+import org.apache.airavata.ws.monitor.MonitorUtil.EventType;
+import org.apache.airavata.wsmg.client.ConsumerNotificationHandler;
+import org.apache.airavata.wsmg.client.MsgBrokerClientException;
+import org.apache.airavata.wsmg.client.NotificationHandler;
+import org.apache.airavata.wsmg.client.WseMsgBrokerClient;
+import org.apache.airavata.wsmg.client.msgbox.MessagePuller;
+import org.apache.airavata.xbaya.XBayaConfiguration;
+import org.apache.airavata.xbaya.graph.controller.NodeController;
+import org.apache.airavata.xbaya.provenance.WorkflowNodeStatusUpdater;
+import org.apache.airavata.xbaya.provenance.WorkflowStatusUpdater;
+import org.apache.axiom.soap.SOAPEnvelope;
+import org.apache.axis2.AxisFault;
+import org.apache.axis2.addressing.EndpointReference;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import org.xmlpull.infoset.XmlElement;
+
+public class WorkflowInterpretorEventListener implements NotificationHandler, ConsumerNotificationHandler {
+
+ private Workflow workflow;
+ private boolean pullMode;
+ private WseMsgBrokerClient wseClient;
+ private URI brokerURL;
+ private String topic;
+ private URI messageBoxURL;
+ private String subscriptionID;
+ private MessagePuller messagePuller;
+ private WorkflowStatusUpdater workflowStatusUpdater;
+ private WorkflowNodeStatusUpdater workflowNodeStatusUpdater;
+ private WorkflowInterpreterConfiguration workflowInterpreterConfiguration;
+ private String lastSubscriptionId;
+
+ private static Logger logger = LoggerFactory.getLogger(WorkflowInterpretorEventListener.class);
+
+ public WorkflowInterpretorEventListener(Workflow workflow, XBayaConfiguration configuration) {
+ this.workflow = workflow;
+ this.brokerURL = configuration.getBrokerURL();
+ this.topic = configuration.getTopic();
+ this.pullMode = true;
+ this.messageBoxURL = configuration.getMessageBoxURL();
+ this.wseClient = new WseMsgBrokerClient();
+ this.wseClient.init(this.brokerURL.toString());
+ this.workflowInterpreterConfiguration = WorkflowInterpreter.getWorkflowInterpreterConfiguration();
+ this.workflowNodeStatusUpdater = new WorkflowNodeStatusUpdater(this.workflowInterpreterConfiguration.getAiravataAPI());
+ this.workflowStatusUpdater = new WorkflowStatusUpdater(this.workflowInterpreterConfiguration.getAiravataAPI());
+ }
+
+ public void start() throws MonitorException {
+
+ subscribe();
+ }
+
+ public void stop() throws MonitorException {
+ unsubscribe();
+ }
+
+ private synchronized void subscribe() throws MonitorException {
+ if (this.subscriptionID != null) {
+ throw new IllegalStateException();
+ }
+ try {
+ if (this.pullMode) {
+ EndpointReference messageBoxEPR = this.wseClient.createPullMsgBox(this.messageBoxURL.toString(),20000L);
+ this.subscriptionID = this.wseClient.subscribe(messageBoxEPR.getAddress(), this.topic, null);
+ this.messagePuller = this.wseClient.startPullingEventsFromMsgBox(messageBoxEPR, this, 1000L, 20000L);
+ } else {
+ String[] endpoints = this.wseClient.startConsumerService(2222, this);
+ this.subscriptionID = this.wseClient.subscribe(endpoints[0], this.topic, null);
+ }
+ } catch (IOException e) {
+ throw new MonitorException("Failed to subscribe.", e);
+ } catch (RuntimeException e) {
+ throw new MonitorException("Failed to subscribe.", e);
+ }
+ }
+
+ /**
+ * Unsubscribes from the notification.
+ *
+ * @throws MonitorException
+ */
+ private synchronized void unsubscribe() throws MonitorException {
+ // This method needs to be synchronized along with subscribe() because
+ // unsubscribe() might be called while subscribe() is being executed.
+ if (this.subscriptionID == null) {
+ throw new IllegalStateException();
+ }
+ try {
+ if (this.pullMode) {
+ this.messagePuller.stopPulling();
+ try {
+ Thread.sleep(100);
+ } catch (InterruptedException e) {
+ throw new MonitorException("Error during stop message puller", e);
+ }
+// } else {
+// this.wseClient.unSubscribe(this.subscriptionID);
+ }
+ this.wseClient.unSubscribe(this.subscriptionID);
+
+ } catch (MsgBrokerClientException e) {
+ throw new MonitorException("Failed to unsubscribe.", e);
+ }
+
+ }
+
+ /**
+ * @see org.apache.airavata.wsmg.client.NotificationHandler#handleNotification(java.lang.String)
+ */
+ public void handleNotification(String message) {
+ try {
+ // String soapBody = WorkFlowUtils.getSoapBodyContent(message);
+ XmlElement event = XMLUtil.stringToXmlElement(message);
+ handleEvent(new EventData(event), true, this.workflow.getGraph());
+
+ // } catch (XMLStreamException e) {
+ // // Just log them because they can be unrelated messages sent to
+ // // this topic by accident.
+ // logger.warn("Could not parse received notification: " + message,
+ // e);
+ // }
+ } catch (RuntimeException e) {
+ logger.warn("Failed to process notification: " + message, e);
+ } catch (AiravataAPIInvocationException e) {
+ logger.error("Error occured during Exception saving to the Registry");
+ }
+ }
+
+ private void handleEvent(EventData event, boolean forward, Graph graph) throws AiravataAPIInvocationException {
+ EventType type = event.getType();
+ String nodeID = event.getNodeID();
+ Node node = graph.getNode(nodeID);
+
+ if (type == MonitorUtil.EventType.WORKFLOW_INVOKED) {
+ workflowStarted(graph, forward);
+ //todo ideally experimentID and workflowInstanceID has to be different
+ workflowStatusUpdater.saveWorkflowData(event.getExperimentID(), event.getExperimentID(),
+ this.workflowInterpreterConfiguration.getWorkflow().getName());
+ workflowStatusUpdater.workflowStarted(event.getExperimentID());
+ } else if (type == MonitorUtil.EventType.WORKFLOW_TERMINATED) {
+ workflowFinished(graph, forward);
+ workflowStatusUpdater.workflowFinished(event.getExperimentID());
+ try {
+ this.unsubscribe();
+ } catch (MonitorException e) {
+ e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
+ }
+ } else if (type == EventType.INVOKING_SERVICE || type == EventType.SERVICE_INVOKED) {
+ if (node == null) {
+ if (nodeID!=null && !nodeID.equals("")) {
+ logger.warn("There is no node that has ID, " + nodeID);
+ }
+ } else {
+ nodeStarted(node, forward);
+ workflowNodeStatusUpdater.workflowNodeStarted(event.getExperimentID(), event.getNodeID()
+ , event.getMessage(), event.getWorkflowID().toASCIIString());
+ }
+ } else if (type == MonitorUtil.EventType.RECEIVED_RESULT
+ // TODO this should be removed when GPEL sends all notification
+ // correctly.
+ || type == EventType.SENDING_RESULT) {
+ if (node == null) {
+ if (nodeID!=null && !nodeID.equals("")) {
+ logger.warn("There is no node that has ID, " + nodeID);
+ }
+ } else {
+ nodeFinished(node, forward);
+ workflowNodeStatusUpdater.workflowNodeFinished(event.getExperimentID(), event.getNodeID(), event.getMessage(),
+ event.getWorkflowID().toASCIIString());
+ }
+ } else if (type == EventType.RECEIVED_FAULT
+ || type == EventType.SENDING_FAULT || type == EventType.SENDING_RESPONSE_FAILED) {
+ //Constructing NodeExecutionError with required data...
+ logger.error(event.getMessage());
+ NodeExecutionError nodeExecutionError = new NodeExecutionError();
+ nodeExecutionError.setExperimentId(event.getExperimentID());
+ nodeExecutionError.setNodeId(event.getNodeID());
+ nodeExecutionError.setWorkflowInstanceId(event.getExperimentID());
+ nodeExecutionError.setErrorMessage(event.getMessage());
+ nodeExecutionError.setErrorDescription(event.getMessage());
+ nodeExecutionError.setErrorTime(event.getTimestamp());
+ this.workflowInterpreterConfiguration.getAiravataAPI().getExecutionManager().addNodeExecutionError(nodeExecutionError);
+ if (node == null) {
+ if (nodeID!=null && !nodeID.equals("")) {
+ logger.warn("There is no node that has ID, " + nodeID);
+ }
+ } else {
+ nodeFailed(node, forward);
+ workflowNodeStatusUpdater.workflowNodeFailed(event.getExperimentID(), event.getNodeID());
+ }
+ try {
+ this.unsubscribe();
+ } catch (MonitorException e) {
+ e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
+ }
+ } else if (type == MonitorUtil.EventType.RESOURCE_MAPPING) {
+ if (node == null) {
+ if (nodeID!=null && !nodeID.equals("")) {
+ logger.warn("There is no node that has ID, " + nodeID);
+ }
+ } else {
+ // nodeResourceMapped(node, event.getEvent(), forward);
+ workflowNodeStatusUpdater.workflowNodeRunning(event.getExperimentID(), event.getNodeID());
+ }
+ } else if(type == MonitorUtil.EventType.LOG_INFO){
+ // This is not very gram specific, if these data is required in other provider they have to send
+ // the notification in info mode with ending these text, DONE,PENDING and ACTIVE
+ if(event.getMessage().endsWith("DONE")) {
+ workflowNodeStatusUpdater.workflowNodeStatusDone(event.getExperimentID(), event.getNodeID());
+ } else if(event.getMessage().endsWith("PENDING")){
+ workflowNodeStatusUpdater.workflowNodeStatusPending(event.getExperimentID(), event.getNodeID());
+ } else if(event.getMessage().endsWith("ACTIVE")){
+ workflowNodeStatusUpdater.workflowNodeStatusActive(event.getExperimentID(), event.getNodeID());
+ }
+ } else {
+ // Ignore the rest.
+ }
+ }
+
+ private void workflowStarted(Graph graph, boolean forward) {
+ for (InputNode node : GraphUtil.getInputNodes(graph)) {
+ if (forward) {
+ finishNode(node);
+ } else {
+ resetNode(node);
+ }
+ }
+ }
+
+ private void workflowFinished(Graph graph, boolean forward) {
+ for (OutputNode node : GraphUtil.getOutputNodes(graph)) {
+ if (forward) {
+ finishNode(node);
+ finishPredecessorNodes(node);
+ } else {
+ resetNode(node);
+ }
+ }
+ }
+
+ private LinkedList<InputNode> getInputNodes(WSGraph graph) {
+ List<NodeImpl> nodes = graph.getNodes();
+ LinkedList<InputNode> inputNodes = new LinkedList<InputNode>();
+ for (NodeImpl nodeImpl : nodes) {
+ if (nodeImpl instanceof InputNode) {
+ inputNodes.add((InputNode) nodeImpl);
+ }
+ }
+ return inputNodes;
+ }
+
+ private LinkedList<OutputNode> getOutputNodes(WSGraph graph) {
+ List<NodeImpl> nodes = graph.getNodes();
+ LinkedList<OutputNode> outputNodes = new LinkedList<OutputNode>();
+ for (NodeImpl nodeImpl : nodes) {
+ if (nodeImpl instanceof OutputNode) {
+ outputNodes.add((OutputNode) nodeImpl);
+ }
+ }
+ return outputNodes;
+ }
+
+ private void nodeStarted(Node node, boolean forward) {
+ if (forward) {
+ executeNode(node);
+ finishPredecessorNodes(node);
+ } else {
+ resetNode(node);
+ }
+ }
+
+ private void nodeFinished(Node node, boolean forward) {
+ if (forward) {
+ finishNode(node);
+ finishPredecessorNodes(node);
+ } else {
+ executeNode(node);
+ }
+ }
+
+ private void nodeFailed(Node node, boolean forward) {
+ if (forward) {
+ failNode(node);
+ finishPredecessorNodes(node);
+ } else {
+ executeNode(node);
+ }
+ }
+
+ private void executeNode(Node node) {
+ node.setState(NodeExecutionState.EXECUTING);
+ }
+
+ private void finishNode(Node node) {
+ node.setState(NodeExecutionState.FINISHED);
+ }
+
+ private void failNode(Node node) {
+ node.setState(NodeExecutionState.FAILED);
+ }
+
+ private void resetNode(Node node) {
+ node.setState(NodeExecutionState.WAITING);
+ NodeController.getGUI(node).resetTokens();
+ }
+
+ /**
+ * Make preceding nodes done. This helps the monitoring GUI when a user subscribes from the middle of the workflow
+ * execution.
+ *
+ * @param node
+ */
+ private void finishPredecessorNodes(Node node) {
+ for (Port inputPort : node.getInputPorts()) {
+ for (Edge edge : inputPort.getEdges()) {
+ Port fromPort = edge.getFromPort();
+ if (!(fromPort instanceof EPRPort)) {
+ Node fromNode = fromPort.getNode();
+ finishNode(fromNode);
+ finishPredecessorNodes(fromNode);
+ }
+ }
+ }
+ Port controlInPort = node.getControlInPort();
+ if (controlInPort != null) {
+ for (Node fromNode : controlInPort.getFromNodes()) {
+ finishNode(fromNode);
+ finishPredecessorNodes(fromNode);
+ }
+ }
+ }
+
+ /**
+ * @see org.apache.airavata.wsmg.client.NotificationHandler#handleNotification(java.lang.String)
+ */
+ public void handleNotification(SOAPEnvelope message) {
+ String soapBody = message.getBody().toString();
+ this.handleNotification(soapBody);
+ }
+
+}
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/9c47eec8/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorMessageReceiverInOut.java
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diff --git a/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorMessageReceiverInOut.java b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorMessageReceiverInOut.java
new file mode 100644
index 0000000..b5623e9
--- /dev/null
+++ b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorMessageReceiverInOut.java
@@ -0,0 +1,262 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+*/
+package org.apache.airavata.xbaya.interpretor;
+
+import org.apache.airavata.client.stub.interpretor.NameValue;
+import org.apache.airavata.client.stub.interpretor.WorkflowInterpretorStub;
+
+
+public class WorkflowInterpretorMessageReceiverInOut extends org.apache.axis2.receivers.AbstractInOutMessageReceiver{
+ public static final String MYPROXY_USER = "myproxy.user";
+ public static final String MYPROXY_PASS = "myproxy.password";
+ public void invokeBusinessLogic(org.apache.axis2.context.MessageContext msgContext, org.apache.axis2.context.MessageContext newMsgContext)
+ throws org.apache.axis2.AxisFault{
+
+ try {
+
+ // get the implementation class for the Web Service
+ Object obj = getTheImplementationObject(msgContext);
+
+ WorkflowInterpretorSkeleton skel = (WorkflowInterpretorSkeleton)obj;
+ //Out Envelop
+ org.apache.axiom.soap.SOAPEnvelope envelope = null;
+ //Find the axisOperation that has been set by the Dispatch phase.
+ org.apache.axis2.description.AxisOperation op = msgContext.getOperationContext().getAxisOperation();
+ if (op == null) {
+ throw new org.apache.axis2.AxisFault("Operation is not located, if this is doclit style the SOAP-ACTION should specified via the SOAP Action to use the RawXMLProvider");
+ }
+
+ java.lang.String methodName;
+ if((op.getName() != null) && ((methodName = org.apache.axis2.util.JavaUtils.xmlNameToJava(op.getName().getLocalPart())) != null)){
+
+
+
+ if("launchWorkflow".equals(methodName)){
+
+ WorkflowInterpretorStub.LaunchWorkflow wrappedParam =
+ (WorkflowInterpretorStub.LaunchWorkflow)fromOM(
+ msgContext.getEnvelope().getBody().getFirstElement(),
+ WorkflowInterpretorStub.LaunchWorkflow.class,
+ getEnvelopeNamespaces(msgContext.getEnvelope()));
+
+
+ WorkflowInterpretorStub.LaunchWorkflowResponse launchWorkflowResponse = wrapLaunchWorkflowResponse_return(
+
+
+ skel.launchWorkflow(
+
+ getWorkflowAsString(wrappedParam)
+ ,
+ getTopic(wrappedParam)
+ ,
+ getInputs(wrappedParam)
+ )
+
+ );
+
+ envelope = toEnvelope(getSOAPFactory(msgContext), launchWorkflowResponse, false);
+
+ } else {
+ throw new java.lang.RuntimeException("method not found");
+ }
+
+
+ newMsgContext.setEnvelope(envelope);
+ }
+ }
+ catch (java.lang.Exception e) {
+ throw org.apache.axis2.AxisFault.makeFault(e);
+ }
+ }
+
+ //
+ private org.apache.axiom.om.OMElement toOM(WorkflowInterpretorStub.LaunchWorkflow param, boolean optimizeContent)
+ throws org.apache.axis2.AxisFault {
+
+
+ try{
+ return param.getOMElement(WorkflowInterpretorStub.LaunchWorkflow.MY_QNAME,
+ org.apache.axiom.om.OMAbstractFactory.getOMFactory());
+ } catch(org.apache.axis2.databinding.ADBException e){
+ throw org.apache.axis2.AxisFault.makeFault(e);
+ }
+
+
+ }
+
+ private org.apache.axiom.om.OMElement toOM(WorkflowInterpretorStub.LaunchWorkflowResponse param, boolean optimizeContent)
+ throws org.apache.axis2.AxisFault {
+
+
+ try{
+ return param.getOMElement(WorkflowInterpretorStub.LaunchWorkflowResponse.MY_QNAME,
+ org.apache.axiom.om.OMAbstractFactory.getOMFactory());
+ } catch(org.apache.axis2.databinding.ADBException e){
+ throw org.apache.axis2.AxisFault.makeFault(e);
+ }
+
+
+ }
+
+ private org.apache.axiom.soap.SOAPEnvelope toEnvelope(org.apache.axiom.soap.SOAPFactory factory, WorkflowInterpretorStub.LaunchWorkflowResponse param, boolean optimizeContent)
+ throws org.apache.axis2.AxisFault{
+ try{
+ org.apache.axiom.soap.SOAPEnvelope emptyEnvelope = factory.getDefaultEnvelope();
+
+ emptyEnvelope.getBody().addChild(param.getOMElement(WorkflowInterpretorStub.LaunchWorkflowResponse.MY_QNAME,factory));
+
+
+ return emptyEnvelope;
+ } catch(org.apache.axis2.databinding.ADBException e){
+ throw org.apache.axis2.AxisFault.makeFault(e);
+ }
+ }
+
+
+ private java.lang.String getWorkflowAsString(
+ WorkflowInterpretorStub.LaunchWorkflow wrappedType){
+
+ return wrappedType.getWorkflowAsString();
+
+ }
+
+
+ private java.lang.String getTopic(
+ WorkflowInterpretorStub.LaunchWorkflow wrappedType){
+
+ return wrappedType.getTopic();
+
+ }
+
+
+ private java.lang.String getPassword(
+ WorkflowInterpretorStub.LaunchWorkflow wrappedType){
+
+ return wrappedType.getPassword();
+
+ }
+
+
+ private java.lang.String getUsername(
+ WorkflowInterpretorStub.LaunchWorkflow wrappedType){
+
+ return wrappedType.getUsername();
+
+ }
+
+
+ private NameValue[] getInputs(
+ WorkflowInterpretorStub.LaunchWorkflow wrappedType){
+
+ return wrappedType.getInputs();
+
+ }
+
+
+ private NameValue[] getConfigurations(
+ WorkflowInterpretorStub.LaunchWorkflow wrappedType){
+
+ return wrappedType.getConfigurations();
+
+ }
+
+
+
+ private WorkflowInterpretorStub.LaunchWorkflowResponse wrapLaunchWorkflowResponse_return(
+ java.lang.String param){
+ WorkflowInterpretorStub.LaunchWorkflowResponse wrappedElement = new WorkflowInterpretorStub.LaunchWorkflowResponse();
+
+ wrappedElement.set_return(param);
+
+ return wrappedElement;
+ }
+
+ private WorkflowInterpretorStub.LaunchWorkflowResponse wraplaunchWorkflow(){
+ WorkflowInterpretorStub.LaunchWorkflowResponse wrappedElement = new WorkflowInterpretorStub.LaunchWorkflowResponse();
+ return wrappedElement;
+ }
+
+
+
+ /**
+ * get the default envelope
+ */
+ private org.apache.axiom.soap.SOAPEnvelope toEnvelope(org.apache.axiom.soap.SOAPFactory factory){
+ return factory.getDefaultEnvelope();
+ }
+
+
+ private java.lang.Object fromOM(
+ org.apache.axiom.om.OMElement param,
+ java.lang.Class type,
+ java.util.Map extraNamespaces) throws org.apache.axis2.AxisFault{
+
+ try {
+
+ if (WorkflowInterpretorStub.LaunchWorkflow.class.equals(type)){
+
+ return WorkflowInterpretorStub.LaunchWorkflow.Factory.parse(param.getXMLStreamReaderWithoutCaching());
+
+
+ }
+
+ if (WorkflowInterpretorStub.LaunchWorkflowResponse.class.equals(type)){
+
+ return WorkflowInterpretorStub.LaunchWorkflowResponse.Factory.parse(param.getXMLStreamReaderWithoutCaching());
+
+
+ }
+
+ } catch (java.lang.Exception e) {
+ throw org.apache.axis2.AxisFault.makeFault(e);
+ }
+ return null;
+ }
+
+
+
+
+
+ /**
+ * A utility method that copies the namepaces from the SOAPEnvelope
+ */
+ private java.util.Map getEnvelopeNamespaces(org.apache.axiom.soap.SOAPEnvelope env){
+ java.util.Map returnMap = new java.util.HashMap();
+ java.util.Iterator namespaceIterator = env.getAllDeclaredNamespaces();
+ while (namespaceIterator.hasNext()) {
+ org.apache.axiom.om.OMNamespace ns = (org.apache.axiom.om.OMNamespace) namespaceIterator.next();
+ returnMap.put(ns.getPrefix(),ns.getNamespaceURI());
+ }
+ return returnMap;
+ }
+
+ private org.apache.axis2.AxisFault createAxisFault(java.lang.Exception e) {
+ org.apache.axis2.AxisFault f;
+ Throwable cause = e.getCause();
+ if (cause != null) {
+ f = new org.apache.axis2.AxisFault(e.getMessage(), cause);
+ } else {
+ f = new org.apache.axis2.AxisFault(e.getMessage());
+ }
+
+ return f;
+ }
+}
http://git-wip-us.apache.org/repos/asf/airavata/blob/9c47eec8/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorSkeleton.java
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diff --git a/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorSkeleton.java b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorSkeleton.java
new file mode 100644
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+++ b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorSkeleton.java
@@ -0,0 +1,572 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
+package org.apache.airavata.xbaya.interpretor;
+
+import org.apache.airavata.client.AiravataAPIFactory;
+import org.apache.airavata.client.api.AiravataAPI;
+import org.apache.airavata.client.api.exception.AiravataAPIInvocationException;
+import org.apache.airavata.client.api.exception.DescriptorAlreadyExistsException;
+import org.apache.airavata.client.stub.interpretor.NameValue;
+import org.apache.airavata.client.tools.PeriodicExecutorThread;
+import org.apache.airavata.common.exception.ApplicationSettingsException;
+import org.apache.airavata.common.utils.AiravataUtils;
+import org.apache.airavata.common.utils.ServerSettings;
+import org.apache.airavata.common.utils.ServiceUtils;
+import org.apache.airavata.common.workflow.execution.context.WorkflowContextHeaderBuilder;
+import org.apache.airavata.commons.gfac.type.HostDescription;
+import org.apache.airavata.schemas.gfac.GlobusHostType;
+import org.apache.airavata.schemas.gfac.GsisshHostType;
+import org.apache.airavata.schemas.gfac.SSHHostType;
+import org.apache.airavata.schemas.wec.ContextHeaderDocument;
+import org.apache.airavata.workflow.model.component.ComponentException;
+import org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException;
+import org.apache.airavata.workflow.model.graph.GraphException;
+import org.apache.airavata.workflow.model.graph.system.InputNode;
+import org.apache.airavata.workflow.model.ode.ODEClient;
+import org.apache.airavata.workflow.model.wf.Workflow;
+import org.apache.airavata.workflow.model.wf.WorkflowExecutionState;
+import org.apache.airavata.ws.monitor.MonitorException;
+import org.apache.airavata.xbaya.XBayaConfiguration;
+import org.apache.airavata.xbaya.XBayaConstants;
+import org.apache.airavata.xbaya.concurrent.PredicatedTaskRunner;
+import org.apache.axiom.om.OMElement;
+import org.apache.axiom.om.impl.builder.StAXOMBuilder;
+import org.apache.axiom.om.impl.llom.util.AXIOMUtil;
+import org.apache.axiom.soap.SOAPHeader;
+import org.apache.axis2.context.ConfigurationContext;
+import org.apache.axis2.context.MessageContext;
+import org.apache.axis2.description.AxisService;
+import org.apache.axis2.engine.ServiceLifeCycle;
+import org.apache.xmlbeans.XmlException;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import javax.xml.namespace.QName;
+import javax.xml.stream.XMLInputFactory;
+import javax.xml.stream.XMLStreamException;
+import javax.xml.stream.XMLStreamReader;
+import java.io.IOException;
+import java.net.URI;
+import java.net.URISyntaxException;
+import java.net.URL;
+import java.util.*;
+//import org.apache.airavata.registry.api.AiravataRegistry2;
+
+/**
+ * WorkflowInterpretorSkeleton java skeleton for the axisService
+ */
+public class WorkflowInterpretorSkeleton implements ServiceLifeCycle {
+ private static final Logger log = LoggerFactory.getLogger(WorkflowInterpretorSkeleton.class);
+
+// public static final String PROXYSERVER = "myproxy.url";
+ public static final String MSGBOX = "msgbox";
+ public static final String GFAC = "gfac";
+ public static final String BROKER = "broker";
+ public static final String MYPROXY_USER = "myproxy.user";
+ public static final String MYPROXY_PASS = "myproxy.pass";
+ public static final String MYPROXY_SERVER = "myproxy.server";
+ public static final String MYPROXY_LIFETIME = "myproxy.life";
+ public static final String TRUSTED_CERT_LOCATION = "trusted.cert.location";
+
+ public static boolean provenance = false;
+ public static final String PROVENANCE = "provenance";
+ public static String systemUserName = "";
+ public static String systemUserPW = "";
+ public static boolean runInThread = false;
+ public static final String RUN_IN_THREAD = "runInThread";
+ public static Boolean gfacEmbeddedMode = true;
+ private static PredicatedTaskRunner runner = null;
+// public static JCRComponentRegistry jcrComponentRegistry = null;
+ private static AiravataAPI airavataAPI=null;
+ public static int provenanceWriterThreadPoolSize = 1;
+ public static final String PROVENANCE_WRITER_THREAD_POOL_SIZE = "provenanceWriterThreadPoolSize";
+ public static final int JCR_AVAIALABILITY_WAIT_INTERVAL = 1000 * 10;
+ public static final String GFAC_EMBEDDED = "gfac.embedded";
+ public static ConfigurationContext configurationContext;
+ public static final String SERVICE_NAME="WorkflowInterpretor";
+ public static boolean notInterrupted = true;
+ public Map<String, WorkflowInterpreterConfiguration> workflowConfigurations=new HashMap<String, WorkflowInterpreterConfiguration>();
+ private WorkflowInterpreterInteractor interactor;
+ private String gateway;
+
+ protected static final String SERVICE_URL = "interpreter_service_url";
+
+ protected static final String JCR_REG = "jcr_registry";
+
+ protected WIServiceThread thread;
+
+ private AiravataAPI getAiravataAPI(){
+ if (airavataAPI==null) {
+ try {
+ systemUserName = ServerSettings.getSystemUser();
+ systemUserPW = ServerSettings.getSystemUserPassword();
+ gateway = ServerSettings.getSystemUserGateway();
+ airavataAPI = AiravataAPIFactory.getAPI(gateway, systemUserName);
+ } catch (ApplicationSettingsException e) {
+ log.error("Unable to read the properties file", e);
+ } catch (AiravataAPIInvocationException e) {
+ log.error("Unable to create Airavata API", e);
+ }
+ }
+ return airavataAPI;
+ }
+
+ private WorkflowInterpreterInteractor getInteractor(){
+ if (interactor==null){
+ interactor=new SSWorkflowInterpreterInteractorImpl();
+ }
+ return interactor;
+ }
+
+ public void startUp(final ConfigurationContext configctx, AxisService service) {
+ AiravataUtils.setExecutionAsServer();
+ new Thread(){
+ @Override
+ public void run() {
+ try {
+ Thread.sleep(JCR_AVAIALABILITY_WAIT_INTERVAL);
+ } catch (InterruptedException e1) {
+ e1.printStackTrace();
+ }
+ try {
+ // Airavata deployer have to configure these properties,but if user send them alone the incoming message
+ // We are overwriting those values only for that particular request
+ configctx.setProperty(MYPROXY_PASS, ServerSettings.getSetting(MYPROXY_PASS));
+ configctx.setProperty(MYPROXY_USER, ServerSettings.getSetting(MYPROXY_USER));
+ configctx.setProperty(MYPROXY_LIFETIME,ServerSettings.getSetting(MYPROXY_LIFETIME));
+ configctx.setProperty(TRUSTED_CERT_LOCATION,ServerSettings.getSetting(TRUSTED_CERT_LOCATION));
+ configctx.setProperty(MYPROXY_SERVER,ServerSettings.getSetting(MYPROXY_SERVER));
+ provenanceWriterThreadPoolSize = Integer.parseInt((String) ServerSettings.getSetting(PROVENANCE_WRITER_THREAD_POOL_SIZE));
+ if("true".equals(ServerSettings.getSetting(PROVENANCE))){
+ provenance = true;
+ runner = new PredicatedTaskRunner(provenanceWriterThreadPoolSize);
+ try {
+ List<HostDescription> hostList = getDefinedHostDescriptions();
+ for(HostDescription host:hostList){
+ // This will avoid the changes user is doing to one of the predefined Hosts during a restart of the system
+ AiravataAPI registry = getAiravataAPI();
+ if(!registry.getApplicationManager().isHostDescriptorExists(host.getType().getHostName())){
+ log.debug("Saving the predefined Host: " + host.getType().getHostName());
+ registry.getApplicationManager().addHostDescription(host);
+ }
+ }
+ } catch (DescriptorAlreadyExistsException e) {
+ e.printStackTrace();
+ } catch (AiravataAPIInvocationException e) {
+ e.printStackTrace();
+
+ }
+ }else{
+ provenance = false;
+ }
+ if("true".equals(ServerSettings.getSetting(RUN_IN_THREAD))){
+ runInThread = true;
+ }else{
+ runInThread = false;
+ }
+
+ if("true".equals(ServerSettings.getSetting(GFAC_EMBEDDED))){
+ gfacEmbeddedMode = true;
+ }else{
+ gfacEmbeddedMode = false;
+ }
+
+ //save the interpreter service url in context
+ String localAddress = ServiceUtils.generateServiceURLFromConfigurationContext(configctx,SERVICE_NAME);
+ configctx.setProperty(SERVICE_URL,new URI(localAddress));
+ configctx.setProperty(JCR_REG,getAiravataAPI());
+ /*
+ * Heart beat message to registry
+ */
+ thread = new WIServiceThread(getAiravataAPI(), configctx);
+ thread.start();
+ } catch (IOException e) {
+ e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
+ } catch (URISyntaxException e) {
+ e.printStackTrace();
+ } catch (ApplicationSettingsException e) {
+ e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
+ }
+ WorkflowInterpretorSkeleton.configurationContext = configctx;
+ }
+ }.start();
+
+ }
+
+ public void suspendWorkflow(String experimentId)throws Exception{
+ if (workflowConfigurations.containsKey(experimentId)){
+ if (getInteractor().isExecutionPaused(workflowConfigurations.get(experimentId))){
+ throw new Exception("Experiment '"+experimentId+"' is already paused!!!");
+ }else{
+ log.info("Suspending workflow execution "+experimentId+"...");
+ getInteractor().pauseExecution(workflowConfigurations.get(experimentId));
+ }
+ }else{
+ throw new Exception("Invalid Experiment id: Experiment "+experimentId+" not running");
+ }
+ }
+
+ public void resumeWorkflow(String experimentId)throws Exception{
+ if (workflowConfigurations.containsKey(experimentId)){
+ if (getInteractor().isExecutionPaused(workflowConfigurations.get(experimentId)) || workflowConfigurations.get(experimentId).getWorkflow().getExecutionState()==WorkflowExecutionState.STOPPED){
+ log.info("Resuming workflow execution "+experimentId+"...");
+ getInteractor().resumeExecution(workflowConfigurations.get(experimentId));
+
+ }else{
+ throw new Exception("Experiment '"+experimentId+"' is not suspended!!!");
+ }
+ }else{
+ //TODO chk to see if the experiment is present in registry if so reload it and resume execution else error
+ throw new Exception("Invalid Experiment id: Experiment "+experimentId+" not running");
+ }
+ }
+
+ public void haltWorkflow(String experimentId)throws Exception{
+ if (workflowConfigurations.containsKey(experimentId)){
+ log.info("Terminating workflow execution "+experimentId+"...");
+ getInteractor().terminateExecution(workflowConfigurations.get(experimentId));
+ }else{
+ throw new Exception("Invalid Experiment id: Experiment "+experimentId+" not running");
+ }
+ }
+
+ /**
+ * @param workflowAsString
+ * @param topic
+ * @param inputs
+ * @return
+ * @throws XMLStreamException
+ */
+ public java.lang.String launchWorkflow(java.lang.String workflowAsString, java.lang.String topic, NameValue[] inputs) throws XMLStreamException {
+ OMElement workflowContext = getWorkflowContextHeader();
+ if(workflowContext == null){
+ workflowContext = AXIOMUtil.stringToOM("<wor:context-header xmlns:wor=\"http://airavata.apache.org/schemas/wec/2012/05\">\n" +
+ " <wor:soa-service-eprs>\n" +
+ " <wor:gfac-url></wor:gfac-url>\n" +
+ " <wor:registry-url></wor:registry-url>\n" +
+ " </wor:soa-service-eprs>\n" +
+ " <wor:workflow-monitoring-context>\n" +
+ " <wor:experiment-id></wor:experiment-id>\n" +
+ " <wor:workflow-instance-id xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:nil=\"true\" />\n" +
+ " <wor:event-publish-epr></wor:event-publish-epr>\n" +
+ " <wor:msg-box-epr></wor:msg-box-epr>\n" +
+ " </wor:workflow-monitoring-context>\n" +
+ " <wor:workflow-scheduling-context />\n" +
+ " <wor:security-context />\n" +
+ "</wor:context-header>");
+ }
+ Map<String, String> configuration = new HashMap<String, String>();
+ WorkflowContextHeaderBuilder workflowContextHeaderBuilder = parseContextHeader(workflowContext, configuration);
+ String user = workflowContextHeaderBuilder.getSubmissionUser();
+
+ String s = null;
+ try {
+ s = setupAndLaunch(workflowAsString, topic, ServerSettings.getSystemUserGateway(),
+ user,inputs, configuration, runInThread, workflowContextHeaderBuilder);
+ } catch (AiravataAPIInvocationException e) {
+ log.error(e.getMessage());
+ } catch (ApplicationSettingsException e) {
+ log.error(e.getMessage());
+ }
+ return s;
+ }
+
+ private OMElement getWorkflowContextHeader() {
+ MessageContext currentMessageContext = MessageContext.getCurrentMessageContext();
+ SOAPHeader header = currentMessageContext.getEnvelope().getHeader();
+ Iterator<?> childrenWithName = header.getChildrenWithName(new QName("http://airavata.apache.org/schemas/wec/2012/05", "context-header"));
+ if (childrenWithName.hasNext()) {
+ return (OMElement) childrenWithName.next();
+ } else {
+ return null;
+ }
+ }
+
+ private WorkflowContextHeaderBuilder parseContextHeader(OMElement workflowContext, Map<String, String> configuration) throws XMLStreamException {
+ ContextHeaderDocument parse = null;
+ try {
+ parse = ContextHeaderDocument.Factory.parse(workflowContext.toStringWithConsume());
+ String msgBox = parse.getContextHeader().getWorkflowMonitoringContext().getMsgBoxEpr();
+ if(msgBox == null || "".equals(msgBox)){
+ msgBox = getAiravataAPI().getAiravataManager().getMessageBoxServiceURL().toASCIIString();
+ }
+ String msgBroker = parse.getContextHeader().getWorkflowMonitoringContext().getEventPublishEpr();
+ if(msgBroker == null || "".equals(msgBroker)){
+ msgBroker = getAiravataAPI().getAiravataManager().getEventingServiceURL().toASCIIString();
+ }
+ String gfac = parse.getContextHeader().getSoaServiceEprs().getGfacUrl();
+// if(gfac == null || "".equals(gfac)){
+// gfac = getAiravataAPI().getAiravataManager().getGFaCURLs().get(0).toString();
+// }
+ configuration.put(BROKER, msgBroker);
+ configuration.put(GFAC, gfac);
+ configuration.put(MSGBOX, msgBox);
+ } catch (XmlException e) {
+ log.error(e.getMessage());
+ } catch (AiravataAPIInvocationException e) {
+ log.error(e.getMessage());
+ }
+ String submissionUser = workflowContext.getAttributeValue(new QName(workflowContext.getNamespace().getNamespaceURI(), "submissionUser"));
+ WorkflowContextHeaderBuilder workflowContextHeaderBuilder = new WorkflowContextHeaderBuilder(parse.getContextHeader());
+ workflowContextHeaderBuilder.setSubmissionUser(submissionUser);
+ return workflowContextHeaderBuilder;
+ }
+
+ public String setupAndLaunch(String workflowAsString, String experimentId, String gatewayId, String username,
+ Map<String,String> inputs,boolean inNewThread,WorkflowContextHeaderBuilder builder) throws AiravataAPIInvocationException{
+ List<NameValue> inputData=new ArrayList<NameValue>();
+ for (String inputName : inputs.keySet()) {
+ NameValue input = new NameValue();
+ input.setName(inputName);
+ input.setValue(inputs.get(inputName));
+ inputData.add(input);
+ }
+ Map<String, String> configuration = new HashMap<String, String>();
+ configuration.put(BROKER, getAiravataAPI().getAiravataManager().getEventingServiceURL().toASCIIString());
+ configuration.put(MSGBOX, getAiravataAPI().getAiravataManager().getMessageBoxServiceURL().toASCIIString());
+
+ return setupAndLaunch(workflowAsString, experimentId, gatewayId, username, inputData.toArray(new NameValue[]{}), configuration, inNewThread, builder);
+ }
+
+ private String setupAndLaunch(String workflowAsString, String topic, String gatewayId, String username,
+ NameValue[] inputs,Map<String,String>configurations,boolean inNewThread,
+ WorkflowContextHeaderBuilder builder) throws AiravataAPIInvocationException{
+ log.debug("Launch is called for topic:"+topic);
+
+ Workflow workflow = null;
+ try {
+ workflow = new Workflow(workflowAsString);
+ log.debug("Workflow Object created");
+ } catch (GraphException e1) {
+ e1.printStackTrace();
+ } catch (ComponentException e1) {
+ e1.printStackTrace();
+ }
+ log.debug("Setting Input values");
+ List<InputNode> inputNodes = new ODEClient().getInputNodes(workflow);
+ for (InputNode inputNode : inputNodes) {
+ for (NameValue input : inputs) {
+ if (inputNode.getID().equals(input.getName())) {
+ inputNode.setDefaultValue(input.getValue());
+ break;
+ }
+ }
+ if (inputNode.getDefaultValue() == null) {
+ throw new WorkflowRuntimeException("Could not find a input value for component with name :" + inputNode.getName());
+ }
+
+ }
+ log.debug("Input all set");
+
+ XBayaConfiguration conf = null;
+ try {
+ conf = getConfiguration(configurations);
+ conf.setTopic(topic);
+ conf.setRunWithCrossProduct(true);
+ } catch (URISyntaxException e1) {
+ throw new WorkflowRuntimeException(e1);
+ }
+ WorkflowInterpretorEventListener listener = null;
+ WorkflowInterpreter interpreter = null;
+ AiravataAPI airavataAPI = AiravataAPIFactory.getAPI(gatewayId, username);
+ WorkflowInterpreterConfiguration workflowInterpreterConfiguration = new WorkflowInterpreterConfiguration(workflow, topic, conf.getMessageBoxURL(), conf.getBrokerURL(), airavataAPI, conf, null, null);
+ workflowInterpreterConfiguration.setGfacEmbeddedMode(gfacEmbeddedMode);
+ workflowInterpreterConfiguration.setActOnProvenance(provenance);
+
+ if (builder.getSecurityContext().getAmazonWebservices() != null) {
+ workflowInterpreterConfiguration.setAwsSecretKey(builder.getSecurityContext().getAmazonWebservices().getSecretAccessKey());
+ workflowInterpreterConfiguration.setAwsAccessKey(builder.getSecurityContext().getAmazonWebservices().getAccessKeyId());
+ }
+ // WorkflowInterpreter object should create prior creation of Listener, because listener needs the threadlocal variable
+ interpreter = new WorkflowInterpreter(workflowInterpreterConfiguration, getInteractor());
+ listener = new WorkflowInterpretorEventListener(workflow, conf);
+ try {
+ log.debug("start listener set");
+ listener.start();
+ } catch (MonitorException e1) {
+ e1.printStackTrace();
+ }
+
+ WorkflowContextHeaderBuilder.setCurrentContextHeader(builder.getContextHeader());
+
+ final WorkflowInterpretorEventListener finalListener = listener;
+ conf.setAiravataAPI(getAiravataAPI());
+
+ final WorkflowInterpreter finalInterpreter = interpreter;
+// interpreter.setActOnProvenance(provenance);
+ interpreter.setProvenanceWriter(runner);
+ final String experimentId = topic;
+ log.debug("Created the interpreter");
+ if(inNewThread){
+ runInThread(finalInterpreter,finalListener,experimentId,builder);
+ }else{
+ executeWorkflow(finalInterpreter, finalListener, experimentId);
+ }
+ log.info("Experiment launched :" + topic);
+ return topic;
+ }
+
+ private void runInThread(final WorkflowInterpreter interpreter,final WorkflowInterpretorEventListener listener,final String experimentId,final WorkflowContextHeaderBuilder builder) {
+ new Thread(new Runnable() {
+
+ public void run() {
+ WorkflowContextHeaderBuilder.setCurrentContextHeader(builder.getContextHeader());
+ executeWorkflow(interpreter, listener, experimentId);
+ }
+ }).start();
+ }
+
+ private void executeWorkflow(WorkflowInterpreter interpreter, WorkflowInterpretorEventListener listener,String experimentId) {
+ try {
+ workflowConfigurations.put(experimentId,interpreter.getConfig());
+ interpreter.scheduleDynamically();
+ log.debug("Interpreter invoked...");
+ } catch (Exception e) {
+ throw new WorkflowRuntimeException(e);
+ } finally {
+ if (workflowConfigurations.containsKey(experimentId)){
+ workflowConfigurations.remove(experimentId);
+ }
+ /*
+ * stop listener no matter what happens
+ */
+// try {
+// if(listener != null)
+// listener.stop();
+// } catch (MonitorException e) {
+// e.printStackTrace();
+// }
+ }
+ }
+
+ public XBayaConfiguration getConfiguration(Map<String,String> vals) throws URISyntaxException {
+ XBayaConfiguration configuration = new XBayaConfiguration();
+ configuration.setBrokerURL(new URI(findValue(vals, BROKER, XBayaConstants.DEFAULT_BROKER_URL.toString())));
+ configuration.setGFacURL(new URI(findValue(vals, GFAC, XBayaConstants.DEFAULT_GFAC_URL.toString())));
+ configuration.setMessageBoxURL(new URI(findValue(vals, MSGBOX, XBayaConstants.DEFAULT_MESSAGE_BOX_URL.toString())));
+ configuration.setMyProxyLifetime(XBayaConstants.DEFAULT_MYPROXY_LIFTTIME);
+ configuration.setMyProxyPort(XBayaConstants.DEFAULT_MYPROXY_PORT);
+ //This null check will fix some test failures
+ if (WorkflowInterpretorSkeleton.configurationContext != null) {
+ configuration.setMyProxyServer(findValue(vals, MYPROXY_SERVER, (String) WorkflowInterpretorSkeleton.configurationContext.getProperty(MYPROXY_SERVER)));
+ configuration.setMyProxyPassphrase(findValue(vals, MYPROXY_PASS, (String) WorkflowInterpretorSkeleton.configurationContext.getProperty(MYPROXY_PASS)));
+ configuration.setMyProxyUsername(findValue(vals, MYPROXY_USER, (String) WorkflowInterpretorSkeleton.configurationContext.getProperty(MYPROXY_USER)));
+ configuration.setTrustedCertLocation(findValue(vals, TRUSTED_CERT_LOCATION, (String) WorkflowInterpretorSkeleton.configurationContext.getProperty(TRUSTED_CERT_LOCATION)));
+ configuration.setTrustedCertLocation(findValue(vals, MYPROXY_LIFETIME, (String) WorkflowInterpretorSkeleton.configurationContext.getProperty(MYPROXY_LIFETIME)));
+ }
+ return configuration;
+ }
+
+ private String findValue(Map<String,String> vals, String key, String defaultVal) {
+ if(vals.get(key) != null) {
+ return vals.get(key);
+ }
+ return defaultVal;
+ }
+
+ public void shutDown(ConfigurationContext configctx, AxisService service) {
+ URI gfacURL = (URI) configctx.getProperty(SERVICE_URL);
+ if (getAiravataAPI() != null && thread != null) {
+ AiravataAPI registry = getAiravataAPI();
+ try {
+ registry.getAiravataManager().removeWorkflowInterpreterURI(gfacURL);
+ } catch (AiravataAPIInvocationException e) {
+ e.printStackTrace();
+ }
+ thread.interrupt();
+ try {
+ thread.join();
+ } catch (InterruptedException e) {
+ log.warn("GFacURL update thread is interrupted");
+ }
+ }
+ if (runner != null) {
+ runner.shutDown();
+ }
+
+ notInterrupted = false;
+ }
+
+ private List<HostDescription> getDefinedHostDescriptions() {
+ URL url = this.getClass().getClassLoader().getResource("host.xml");
+ ArrayList<HostDescription> hostDescriptions = new ArrayList<HostDescription>();
+ XMLStreamReader reader = null;
+ try {
+ if (url != null) {
+ reader = XMLInputFactory.newInstance().createXMLStreamReader(url.openStream());
+ } else {
+ throw new RuntimeException("Error retrieving host.xml file. Should reside in " +
+ "$SERVER_HOME/webapps/axis2/WEB-INF/classes/host.xml");
+ }
+ } catch (XMLStreamException e) {
+ e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
+ } catch (IOException e) {
+ e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
+ }
+ StAXOMBuilder builder = new StAXOMBuilder(reader);
+ OMElement documentElement = builder.getDocumentElement();
+ Iterator<?> server = documentElement.getChildrenWithName(new QName("server"));
+ while (server.hasNext()) {
+ HostDescription hostDescription = new HostDescription();
+ OMElement next = (OMElement) server.next();
+ if (next.getFirstChildWithName(new QName("gram.endpoint")) != null &&
+ "globus".equals(next.getFirstChildWithName(new QName("type")).getText())) {
+ hostDescription.getType().changeType(GlobusHostType.type);
+ ((GlobusHostType) hostDescription.getType()).addGlobusGateKeeperEndPoint(next.getFirstChildWithName(new QName("gram.endpoint")).getText());
+ ((GlobusHostType) hostDescription.getType()).addGridFTPEndPoint(next.getFirstChildWithName(new QName("gridftp.endpoint")).getText());
+ } else if("ssh".equals(next.getFirstChildWithName(new QName("type")).getText())) {
+ hostDescription.getType().changeType(SSHHostType.type);
+ if(next.getFirstChildWithName(new QName("hpc.resource")) != null){
+ if("true".equals(next.getFirstChildWithName(new QName("gram.endpoint")))){
+ ((SSHHostType) hostDescription.getType()).setHpcResource(true);
+ }
+ }
+ ((SSHHostType) hostDescription.getType()).setHpcResource(false);
+ } else if("gsissh".equals(next.getFirstChildWithName(new QName("type")).getText())) {
+ hostDescription.getType().changeType(GsisshHostType.type);
+ }
+ (hostDescription.getType()).setHostName(next.getFirstChildWithName(new QName("name")).getText());
+ (hostDescription.getType()).setHostAddress(next.getFirstChildWithName(new QName("host")).getText());
+ hostDescriptions.add(hostDescription);
+ }
+ return hostDescriptions;
+ }
+
+ public static final int URL_UPDATE_INTERVAL = 1000 * 60 * 60 * 3;
+
+ class WIServiceThread extends PeriodicExecutorThread {
+ private ConfigurationContext context = null;
+
+ WIServiceThread(AiravataAPI registry, ConfigurationContext context) {
+ super(registry);
+ this.context = context;
+ }
+
+ @Override
+ protected void updateRegistry(AiravataAPI registry) throws Exception {
+ URI localAddress = (URI) this.context.getProperty(SERVICE_URL);
+ registry.getAiravataManager().addWorkflowInterpreterURI(localAddress);
+ log.debug("Updated Workflow Interpreter service URL in to Repository");
+
+ }
+ }
+}
http://git-wip-us.apache.org/repos/asf/airavata/blob/9c47eec8/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/AsynchronousInvoker.java
----------------------------------------------------------------------
diff --git a/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/AsynchronousInvoker.java b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/AsynchronousInvoker.java
new file mode 100644
index 0000000..defd8c2
--- /dev/null
+++ b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/AsynchronousInvoker.java
@@ -0,0 +1,118 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
+package org.apache.airavata.xbaya.invoker;
+
+import org.apache.airavata.common.utils.XMLUtil;
+import org.apache.airavata.workflow.model.exceptions.WorkflowException;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import xsul.wsdl.WsdlDefinitions;
+import xsul.wsif.WSIFMessage;
+import xsul.wsif.WSIFOperation;
+import xsul.xwsif_runtime_async.WSIFAsyncResponsesCorrelator;
+import xsul.xwsif_runtime_async_http.XsulSoapHttpWsaResponsesCorrelator;
+
+public class AsynchronousInvoker extends SimpleInvoker {
+
+ private static final Logger logger = LoggerFactory.getLogger(AsynchronousInvoker.class);
+
+ private String messageBoxURL;
+
+ /**
+ * Constructs an AsynchronousInvoker.
+ *
+ * @param definitions
+ */
+ public AsynchronousInvoker(WsdlDefinitions definitions) {
+ this(definitions, null);
+ }
+
+ /**
+ * Constructs an AsynchronousInvoker.
+ *
+ * @param definitions
+ * @param messageBoxURL
+ */
+ public AsynchronousInvoker(WsdlDefinitions definitions, String messageBoxURL) {
+ super(definitions);
+ this.messageBoxURL = messageBoxURL;
+ }
+
+ /**
+ * @see org.apache.airavata.xbaya.invoker.SimpleInvoker#setup()
+ */
+ @Override
+ public void setup() throws WorkflowException {
+ super.setup();
+ /* Set the output message to null to set teh output from async Listener */
+ WSIFAsyncResponsesCorrelator correlator;
+ if (this.messageBoxURL == null || this.messageBoxURL.length() == 0) {
+ correlator = new XsulSoapHttpWsaResponsesCorrelator();
+ String serverLoc = ((XsulSoapHttpWsaResponsesCorrelator) correlator).getServerLocation();
+ logger.debug("using async correlator at " + serverLoc);
+ } else {
+ correlator = new MsgBoxWsaResponsesCorrelator(this.messageBoxURL,this);
+ logger.debug("using message box at " + this.messageBoxURL);
+ }
+ this.client.useAsyncMessaging(correlator);
+ }
+
+ public boolean invoke() throws WorkflowException {
+ final WSIFOperation operation = this.getOperation();
+ final WSIFMessage inputMessage = this.getInputMessage();
+ this.setOutputMessage(null);
+ try {
+ new Thread() {
+ @Override
+ public void run() {
+ try {
+ operation.executeInputOnlyOperation(inputMessage);
+ } catch (Exception e) {
+ // Ignore the error.
+ logger.error("Error invoking GFac Service",e);
+ }
+ }
+ }.start();
+
+ while(this.getOutputMessage() == null){
+ try {
+ Thread.sleep(1000);
+ } catch (InterruptedException e) {
+ logger.error("Error Waiting for the response from backend");
+ }
+ }
+ // Gfac operation failed, so xbaya side throws this exception
+ if("ErrorResponse".equals(XMLUtil.stringToXmlElement3(this.getOutputMessage().toString()).getName())){
+ // Here we do not throw an exception, because if we throw an exception Interpreter will catch it and do the unsubscription,
+ // which is not needed because if there's an gfac side error gfac will send a failure and unsubscription will be done in monitoring
+ // so if we send an exception we are attempting to do two unsubscriptions which will cause a one unsubscription to fail.
+ return false;
+ }
+
+ return true;
+ } catch (RuntimeException e) {
+ String message = "Error in invoking a service.";
+ throw new WorkflowException(message, e);
+ }
+ }
+}
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/9c47eec8/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/DynamicInvoker.java
----------------------------------------------------------------------
diff --git a/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/DynamicInvoker.java b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/DynamicInvoker.java
new file mode 100644
index 0000000..5020ef4
--- /dev/null
+++ b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/DynamicInvoker.java
@@ -0,0 +1,167 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
+package org.apache.airavata.xbaya.invoker;
+
+import java.lang.reflect.Method;
+import java.net.URL;
+import java.net.URLClassLoader;
+
+import org.apache.airavata.workflow.model.exceptions.WorkflowException;
+
+import xsul.wsif.WSIFMessage;
+import xsul.xwsif_runtime.WSIFClient;
+
+public class DynamicInvoker implements Invoker {
+
+ private URL jarUrl;
+
+ private String className;
+
+ private String operationName;
+
+ private Object[] inputs;
+
+ private Object result;
+
+ /**
+ * Constructs a DynamicInvoker.
+ *
+ * @param className
+ * @param jarUrl
+ * @param operationName
+ */
+ public DynamicInvoker(String className, URL jarUrl, String operationName, Object[] inputs) {
+ this.className = className;
+ this.jarUrl = jarUrl;
+ this.operationName = operationName;
+ this.inputs = inputs;
+ }
+
+ /**
+ * @see org.apache.airavata.xbaya.invoker.WorkflowInvoker#getOutput(java.lang.String)
+ */
+ public Object getOutput(String name) throws WorkflowException {
+ waitToFinish();
+ return result;
+ }
+
+ /**
+ * @see org.apache.airavata.xbaya.invoker.WorkflowInvoker#invoke()
+ */
+ public boolean invoke() throws WorkflowException {
+ try {
+ Class<?> targetClass = Class.forName(this.className);
+ Object obj = targetClass.newInstance();
+
+ Method[] methods = targetClass.getDeclaredMethods();
+ Method targetMethod = null;
+ for (Method method : methods) {
+ if (this.operationName.equals(method.getName())) {
+ targetMethod = method;
+ break;
+ }
+ }
+ if (targetMethod == null) {
+ throw new WorkflowException("Could not find the method using reflection: " + this.operationName);
+ }
+
+ targetMethod.setAccessible(true);
+ this.result = targetMethod.invoke(obj, inputs);
+
+ } catch (Exception e) {
+ throw new WorkflowException(e);
+ }
+ return true;
+ }
+
+ /**
+ * @see org.apache.airavata.xbaya.invoker.WorkflowInvoker#setInput(java.lang.String, java.lang.Object)
+ */
+ public void setInput(String name, Object value) throws WorkflowException {
+
+ }
+
+ /**
+ * @see org.apache.airavata.xbaya.invoker.WorkflowInvoker#setOperation(java.lang.String)
+ */
+ public void setOperation(String operationName) throws WorkflowException {
+ this.operationName = operationName;
+ }
+
+ /**
+ * @see org.apache.airavata.xbaya.invoker.WorkflowInvoker#setup()
+ */
+ public void setup() throws WorkflowException {
+ Class[] parameters = new Class[] { URL.class };
+ URLClassLoader sysloader = (URLClassLoader) ClassLoader.getSystemClassLoader();
+ Class sysclass = URLClassLoader.class;
+
+ try {
+ Method method = sysclass.getDeclaredMethod("addURL", parameters);
+ method.setAccessible(true);
+ method.invoke(sysloader, new Object[] { this.jarUrl });
+ } catch (Throwable t) {
+ t.printStackTrace();
+ throw new WorkflowException("Error, could not add URL to system classloader");
+ }
+ }
+
+ /**
+ * @see org.apache.airavata.xbaya.invoker.WorkflowInvoker#waitToFinish()
+ */
+ public void waitToFinish() throws WorkflowException {
+ while (this.result == null) {
+ try {
+ Thread.sleep(200);
+ } catch (InterruptedException e) {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
+ }
+
+ }
+
+ /**
+ * @see org.apache.airavata.xbaya.invoker.WorkflowInvoker#getOutputs()
+ */
+ public WSIFMessage getOutputs() throws WorkflowException {
+ waitToFinish();
+ return (WSIFMessage) this.result;
+
+ }
+
+ @Override
+ public WSIFClient getClient() {
+ return null;
+ }
+
+ @Override
+ public WSIFMessage getInputs() throws WorkflowException {
+ return null;
+ }
+
+ @Override
+ public WSIFMessage getFault() throws WorkflowException {
+ return null;
+ }
+
+}
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/9c47eec8/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/DynamicServiceCreator.java
----------------------------------------------------------------------
diff --git a/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/DynamicServiceCreator.java b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/DynamicServiceCreator.java
new file mode 100644
index 0000000..cc7fc2c
--- /dev/null
+++ b/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/DynamicServiceCreator.java
@@ -0,0 +1,86 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements. See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership. The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied. See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+ */
+
+package org.apache.airavata.xbaya.invoker;
+
+import java.io.File;
+import java.net.URI;
+
+import javax.xml.namespace.QName;
+
+import org.apache.airavata.workflow.model.exceptions.WorkflowException;
+import org.apache.airavata.xbaya.invoker.factory.InvokerFactory;
+
+import xsul.wsdl.WsdlDefinitions;
+import xsul.wsdl.WsdlResolver;
+
+public class DynamicServiceCreator {
+
+ private String dynamicFactoryWSDLLocation;
+
+ private static String classStr = "package org.apache.airavata.xbaya;" +
+
+ "public class DefaultClassName{" +
+
+ "public int operationName(String[] stringArray0){" +
+
+ "return 8;" + "}" + "}";
+
+ /**
+ * Constructs a DynamicServiceCreator.
+ *
+ * @param dynamicFactoryWSDLLocation
+ */
+ public DynamicServiceCreator(String dynamicFactoryWSDLLocation) {
+ this.dynamicFactoryWSDLLocation = dynamicFactoryWSDLLocation;
+ }
+
+ public void createService(String code) throws WorkflowException {
+ try {
+ WsdlDefinitions definitions = null;
+ if (this.dynamicFactoryWSDLLocation != null && !this.dynamicFactoryWSDLLocation.equals("")) {
+ definitions = WsdlResolver.getInstance().loadWsdl(new File(".").toURI(),
+ new URI(this.dynamicFactoryWSDLLocation));
+ }
+
+ // Create Invoker
+ // FIXME: Should pass the right leadcontext header for last argument
+ Invoker invoker = InvokerFactory.createInvoker(new QName("http://extreme.indiana.edu",
+ "ServiceCreatorPortType"), definitions, null, null, null);
+
+ invoker.setup();
+
+ invoker.setOperation("deployServiceFromClass");
+ invoker.setInput("classAsString", code);
+ invoker.invoke();
+ invoker.getOutput("return");
+ } catch (Exception e) {
+ throw new WorkflowException(e);
+ }
+
+ }
+
+ public static void main(String[] args) throws WorkflowException {
+ DynamicServiceCreator c = new DynamicServiceCreator("http://127.0.0.1:8080/axis2/services/ServiceCreator?wsdl");
+ c.createService(classStr);
+ }
+
+}
\ No newline at end of file