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Posted to commits@taverna.apache.org by re...@apache.org on 2015/03/26 19:52:40 UTC
[51/51] [partial] incubator-taverna-workbench git commit: all
packages are moved to org.apache.taverna.*
all packages are moved to org.apache.taverna.*
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/commit/a9a52bd5
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/tree/a9a52bd5
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/diff/a9a52bd5
Branch: refs/heads/master
Commit: a9a52bd52cae2bdade18243a1444f2cdca3e68ad
Parents: ed0a8e1
Author: Dmitry Repchevsky <re...@list.ru>
Authored: Thu Mar 26 19:50:10 2015 +0100
Committer: Dmitry Repchevsky <re...@list.ru>
Committed: Thu Mar 26 19:50:10 2015 +0100
----------------------------------------------------------------------
.../activityicons/ActivityIconManager.java | 41 -
.../activityicons/ActivityIconSPI.java | 57 -
.../activityicons/DefaultActivityIcon.java | 54 -
.../impl/ActivityIconManagerImpl.java | 85 -
.../activityicons/ActivityIconManager.java | 40 +
.../activityicons/ActivityIconSPI.java | 56 +
.../activityicons/DefaultActivityIcon.java | 53 +
.../impl/ActivityIconManagerImpl.java | 84 +
...a.t2.workbench.activityicons.ActivityIconSPI | 1 -
...erna.workbench.activityicons.ActivityIconSPI | 1 +
.../spring/activity-icons-api-context-osgi.xml | 6 +-
.../spring/activity-icons-api-context.xml | 4 +-
.../AbstractConfigurableServiceProvider.java | 53 -
.../AbstractTemplateService.java | 85 -
.../ConfigurableServiceProvider.java | 10 -
.../CustomizedConfigurePanelProvider.java | 36 -
.../servicedescriptions/IdentifiedObject.java | 30 -
.../servicedescriptions/ServiceDescription.java | 80 -
.../ServiceDescriptionProvider.java | 61 -
.../ServiceDescriptionRegistry.java | 50 -
.../ServiceDescriptionsConfiguration.java | 36 -
.../events/AbstractProviderEvent.java | 16 -
.../events/AbstractProviderNotification.java | 18 -
.../events/AddedProviderEvent.java | 10 -
.../PartialServiceDescriptionsNotification.java | 22 -
.../events/ProviderErrorNotification.java | 19 -
.../events/ProviderStatusNotification.java | 12 -
.../events/ProviderUpdatingNotification.java | 11 -
.../events/ProviderWarningNotification.java | 12 -
.../events/RemovedProviderEvent.java | 10 -
.../events/ServiceDescriptionProvidedEvent.java | 20 -
.../events/ServiceDescriptionRegistryEvent.java | 4 -
.../AbstractConfigurableServiceProvider.java | 72 +
.../AbstractTemplateService.java | 104 +
.../ConfigurableServiceProvider.java | 29 +
.../CustomizedConfigurePanelProvider.java | 35 +
.../servicedescriptions/IdentifiedObject.java | 49 +
.../servicedescriptions/ServiceDescription.java | 99 +
.../ServiceDescriptionProvider.java | 80 +
.../ServiceDescriptionRegistry.java | 69 +
.../ServiceDescriptionsConfiguration.java | 35 +
.../events/AbstractProviderEvent.java | 35 +
.../events/AbstractProviderNotification.java | 37 +
.../events/AddedProviderEvent.java | 29 +
.../PartialServiceDescriptionsNotification.java | 41 +
.../events/ProviderErrorNotification.java | 38 +
.../events/ProviderStatusNotification.java | 31 +
.../events/ProviderUpdatingNotification.java | 30 +
.../events/ProviderWarningNotification.java | 31 +
.../events/RemovedProviderEvent.java | 29 +
.../events/ServiceDescriptionProvidedEvent.java | 39 +
.../events/ServiceDescriptionRegistryEvent.java | 23 +
.../impl/ServiceDescriptionConstants.java | 10 -
.../impl/ServiceDescriptionDeserializer.java | 167 --
.../impl/ServiceDescriptionRegistryImpl.java | 652 -------
.../impl/ServiceDescriptionSerializer.java | 102 -
.../impl/ServiceDescriptionXMLConstants.java | 15 -
.../ServiceDescriptionsConfigurationImpl.java | 92 -
.../ActivityPaletteConfiguration.java | 81 -
.../ActivityPaletteConfigurationPanel.java | 284 ---
.../ActivityPaletteConfigurationUIFactory.java | 52 -
.../impl/ServiceDescriptionConstants.java | 10 +
.../impl/ServiceDescriptionDeserializer.java | 167 ++
.../impl/ServiceDescriptionRegistryImpl.java | 652 +++++++
.../impl/ServiceDescriptionSerializer.java | 102 +
.../impl/ServiceDescriptionXMLConstants.java | 15 +
.../ServiceDescriptionsConfigurationImpl.java | 92 +
.../ActivityPaletteConfiguration.java | 81 +
.../ActivityPaletteConfigurationPanel.java | 284 +++
.../ActivityPaletteConfigurationUIFactory.java | 52 +
...rkbench.configuration.ConfigurationUIFactory | 1 -
...rkbench.configuration.ConfigurationUIFactory | 1 +
.../activity-palette-impl-context-osgi.xml | 6 +-
.../spring/activity-palette-impl-context.xml | 6 +-
.../ActivityPaletteConfigurationTest.java | 97 -
.../ActivityPaletteConfigurationTest.java | 98 +
...averna.t2.partition.PartitionAlgorithmSetSPI | 2 +-
...sf.taverna.t2.partition.PropertyExtractorSPI | 6 +-
.../net.sf.taverna.t2.partition.QueryFactory | 4 +-
.../servicepanel/PathElementFilterTreeNode.java | 34 -
.../ui/servicepanel/RootFilterTreeNode.java | 34 -
.../ui/servicepanel/ServiceFilter.java | 158 --
.../ui/servicepanel/ServiceFilterTreeNode.java | 40 -
.../workbench/ui/servicepanel/ServicePanel.java | 411 ----
.../ServicePanelComponentFactory.java | 82 -
.../servicepanel/ServiceTreeCellRenderer.java | 77 -
.../servicepanel/ServiceTreeClickListener.java | 252 ---
.../ui/servicepanel/ServiceTreePanel.java | 176 --
.../actions/AddServiceProviderAction.java | 256 ---
.../ExportServiceDescriptionsAction.java | 155 --
...ImportServiceDescriptionsFromFileAction.java | 158 --
.../ImportServiceDescriptionsFromURLAction.java | 129 --
.../actions/RefreshProviderRegistryAction.java | 52 -
.../actions/RemoveDefaultServicesAction.java | 51 -
.../actions/RemoveUserServicesAction.java | 59 -
.../actions/RestoreDefaultServicesAction.java | 50 -
.../config/ServiceDescriptionConfigPanel.java | 181 --
.../ServiceDescriptionConfigUIFactory.java | 57 -
.../menu/AddServiceProviderMenu.java | 113 --
.../workbench/ui/servicepanel/tree/Filter.java | 33 -
.../tree/FilterTreeCellRenderer.java | 59 -
.../ui/servicepanel/tree/FilterTreeModel.java | 92 -
.../ui/servicepanel/tree/FilterTreeNode.java | 142 --
.../tree/FilterTreeSelectionModel.java | 46 -
.../ui/servicepanel/tree/MyFilter.java | 89 -
.../ui/servicepanel/tree/TreePanel.java | 371 ----
.../servicepanel/PathElementFilterTreeNode.java | 33 +
.../ui/servicepanel/RootFilterTreeNode.java | 33 +
.../ui/servicepanel/ServiceFilter.java | 157 ++
.../ui/servicepanel/ServiceFilterTreeNode.java | 39 +
.../workbench/ui/servicepanel/ServicePanel.java | 410 ++++
.../ServicePanelComponentFactory.java | 81 +
.../servicepanel/ServiceTreeCellRenderer.java | 76 +
.../servicepanel/ServiceTreeClickListener.java | 251 +++
.../ui/servicepanel/ServiceTreePanel.java | 192 ++
.../actions/AddServiceProviderAction.java | 255 +++
.../ExportServiceDescriptionsAction.java | 154 ++
...ImportServiceDescriptionsFromFileAction.java | 157 ++
.../ImportServiceDescriptionsFromURLAction.java | 128 ++
.../actions/RefreshProviderRegistryAction.java | 51 +
.../actions/RemoveDefaultServicesAction.java | 50 +
.../actions/RemoveUserServicesAction.java | 58 +
.../actions/RestoreDefaultServicesAction.java | 49 +
.../config/ServiceDescriptionConfigPanel.java | 181 ++
.../ServiceDescriptionConfigUIFactory.java | 56 +
.../menu/AddServiceProviderMenu.java | 112 ++
.../workbench/ui/servicepanel/tree/Filter.java | 32 +
.../tree/FilterTreeCellRenderer.java | 58 +
.../ui/servicepanel/tree/FilterTreeModel.java | 91 +
.../ui/servicepanel/tree/FilterTreeNode.java | 141 ++
.../tree/FilterTreeSelectionModel.java | 45 +
.../ui/servicepanel/tree/MyFilter.java | 88 +
.../ui/servicepanel/tree/TreePanel.java | 370 ++++
....t2.workbench.ui.zaria.UIComponentFactorySPI | 1 -
...rna.workbench.ui.zaria.UIComponentFactorySPI | 1 +
.../spring/activity-palette-ui-context-osgi.xml | 12 +-
.../spring/activity-palette-ui-context.xml | 4 +-
.../AbstractConfigureActivityMenuAction.java | 64 -
.../AbstractConfigureActivityMenuAction.java | 83 +
.../t2/lang/beans/PropertyAnnotated.java | 74 -
.../t2/lang/beans/PropertyAnnotation.java | 109 --
.../lang/beans/PropertyAnnotationExtractor.java | 202 --
.../taverna/lang/beans/PropertyAnnotated.java | 73 +
.../taverna/lang/beans/PropertyAnnotation.java | 108 ++
.../lang/beans/PropertyAnnotationExtractor.java | 201 ++
.../configuration/colour/ColourManager.java | 41 -
.../configuration/mimetype/MimeTypeManager.java | 42 -
.../workbench/WorkbenchConfiguration.java | 44 -
.../workbench/ui/T2ConfigurationFrame.java | 30 -
.../configuration/colour/ColourManager.java | 40 +
.../configuration/mimetype/MimeTypeManager.java | 41 +
.../workbench/WorkbenchConfiguration.java | 43 +
.../workbench/ui/T2ConfigurationFrame.java | 29 +
.../WorkbenchConfigurationImpl.java | 210 --
.../WorkbenchConfigurationPanel.java | 266 ---
.../WorkbenchConfigurationUIFactory.java | 52 -
.../configuration/colour/ColourManagerImpl.java | 178 --
.../mimetype/MimeTypeManagerImpl.java | 82 -
.../ui/T2ConfigurationFrameImpl.java | 205 --
.../ui/WorkbenchConfigurationMenu.java | 61 -
.../ui/WorkbenchPreferencesSection.java | 36 -
.../WorkbenchConfigurationImpl.java | 209 ++
.../WorkbenchConfigurationPanel.java | 265 +++
.../WorkbenchConfigurationUIFactory.java | 51 +
.../configuration/colour/ColourManagerImpl.java | 177 ++
.../mimetype/MimeTypeManagerImpl.java | 81 +
.../ui/T2ConfigurationFrameImpl.java | 204 ++
.../ui/WorkbenchConfigurationMenu.java | 60 +
.../ui/WorkbenchPreferencesSection.java | 35 +
.../net.sf.taverna.t2.ui.menu.MenuComponent | 2 -
...rkbench.configuration.ConfigurationUIFactory | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 2 +
...rkbench.configuration.ConfigurationUIFactory | 1 +
.../spring/configuration-impl-context-osgi.xml | 8 +-
.../spring/configuration-impl-context.xml | 14 +-
.../configuration/ConfigurationManagerTest.java | 109 --
.../configuration/colour/ColourManagerTest.java | 90 -
.../configuration/ConfigurationManagerTest.java | 108 ++
.../configuration/colour/ColourManagerTest.java | 89 +
.../activity/ActivityConfigurationAction.java | 167 --
.../activity/ActivityContextualView.java | 69 -
.../HTMLBasedActivityContextualView.java | 81 -
.../contextualviews/AddLayerFactorySPI.java | 43 -
.../views/contextualviews/ContextualView.java | 109 --
.../activity/ActivityConfigurationDialog.java | 474 -----
.../activity/ActivityConfigurationPanel.java | 214 ---
.../activity/ActivityPortConfiguration.java | 84 -
.../activity/ContextualViewFactory.java | 63 -
.../activity/ContextualViewFactoryRegistry.java | 43 -
.../activity/DependencyConfigurationPanel.java | 293 ---
.../activity/ListConfigurationComponent.java | 119 --
.../contextualviews/activity/ListLayout.java | 92 -
.../MultiPageActivityConfigurationPanel.java | 65 -
.../activity/ScriptConfigurationComponent.java | 150 --
.../activity/ValidatingTextField.java | 53 -
.../activity/ValidatingTextGroup.java | 119 --
.../activity/ActivityConfigurationAction.java | 166 ++
.../activity/ActivityContextualView.java | 68 +
.../HTMLBasedActivityContextualView.java | 80 +
.../contextualviews/AddLayerFactorySPI.java | 42 +
.../views/contextualviews/ContextualView.java | 108 ++
.../activity/ActivityConfigurationDialog.java | 493 +++++
.../activity/ActivityConfigurationPanel.java | 230 +++
.../activity/ActivityPortConfiguration.java | 83 +
.../activity/ContextualViewFactory.java | 62 +
.../activity/ContextualViewFactoryRegistry.java | 42 +
.../activity/DependencyConfigurationPanel.java | 292 +++
.../activity/ListConfigurationComponent.java | 118 ++
.../contextualviews/activity/ListLayout.java | 91 +
.../MultiPageActivityConfigurationPanel.java | 64 +
.../activity/ScriptConfigurationComponent.java | 149 ++
.../activity/ValidatingTextField.java | 52 +
.../activity/ValidatingTextGroup.java | 118 ++
....t2.workbench.ui.zaria.UIComponentFactorySPI | 2 -
...taverna.t2.workbench.ui.zaria.UIComponentSPI | 3 -
...rna.workbench.ui.zaria.UIComponentFactorySPI | 2 +
...he.taverna.workbench.ui.zaria.UIComponentSPI | 3 +
.../impl/ContextualViewFactoryRegistryImpl.java | 75 -
.../annotated/AnnotatedContextualView.java | 263 ---
.../AnnotatedContextualViewFactory.java | 43 -
.../condition/ConditionContextualView.java | 74 -
.../ConditionContextualViewFactory.java | 51 -
.../dataflow/DataflowContextualView.java | 108 --
.../dataflow/DataflowContextualViewFactory.java | 41 -
.../DataflowInputPortContextualView.java | 96 -
.../DataflowInputPortContextualViewFactory.java | 54 -
.../DataflowOutputPortContextualView.java | 106 -
...DataflowOutputPortContextualViewFactory.java | 55 -
.../datalink/DatalinkContextualView.java | 106 -
.../datalink/DatalinkContextualViewFactory.java | 55 -
.../impl/ContextualViewComponent.java | 389 ----
.../impl/ContextualViewComponentFactory.java | 64 -
.../inputport/InputPortContextualView.java | 76 -
.../InputPortContextualViewFactory.java | 48 -
.../merge/MergeConfigurationAction.java | 79 -
.../merge/MergeConfigurationView.java | 233 ---
.../merge/MergeContextualView.java | 150 --
.../merge/MergeContextualViewFactory.java | 66 -
.../outputport/OutputPortContextualView.java | 76 -
.../OutputPortContextualViewFactory.java | 48 -
.../impl/ContextualViewFactoryRegistryImpl.java | 71 +
.../annotated/AnnotatedContextualView.java | 262 +++
.../AnnotatedContextualViewFactory.java | 62 +
.../condition/ConditionContextualView.java | 73 +
.../ConditionContextualViewFactory.java | 50 +
.../dataflow/DataflowContextualView.java | 124 ++
.../dataflow/DataflowContextualViewFactory.java | 57 +
.../DataflowInputPortContextualView.java | 95 +
.../DataflowInputPortContextualViewFactory.java | 53 +
.../DataflowOutputPortContextualView.java | 105 +
...DataflowOutputPortContextualViewFactory.java | 54 +
.../datalink/DatalinkContextualView.java | 105 +
.../datalink/DatalinkContextualViewFactory.java | 54 +
.../impl/ContextualViewComponent.java | 408 ++++
.../impl/ContextualViewComponentFactory.java | 63 +
.../inputport/InputPortContextualView.java | 75 +
.../InputPortContextualViewFactory.java | 47 +
.../merge/MergeConfigurationAction.java | 78 +
.../merge/MergeConfigurationView.java | 252 +++
.../merge/MergeContextualView.java | 149 ++
.../merge/MergeContextualViewFactory.java | 65 +
.../outputport/OutputPortContextualView.java | 75 +
.../OutputPortContextualViewFactory.java | 47 +
...ntextualviews.activity.ContextualViewFactory | 9 -
....t2.workbench.ui.zaria.UIComponentFactorySPI | 1 -
...ntextualviews.activity.ContextualViewFactory | 9 +
...rna.workbench.ui.zaria.UIComponentFactorySPI | 1 +
.../contextual-views-impl-context-osgi.xml | 34 +-
.../spring/contextual-views-impl-context.xml | 22 +-
.../ProcessorActivitiesContextualView.java | 154 --
...rocessorActivitiesContextualViewFactory.java | 75 -
...rPredictedBehaviorContextualViewFactory.java | 177 --
.../ProcessorActivitiesContextualView.java | 153 ++
...rocessorActivitiesContextualViewFactory.java | 74 +
...rPredictedBehaviorContextualViewFactory.java | 176 ++
...ntextualviews.activity.ContextualViewFactory | 4 -
...ntextualviews.activity.ContextualViewFactory | 4 +
.../spring/contextual-views-context-osgi.xml | 8 +-
.../spring/contextual-views-context.xml | 4 +-
.../ui/credentialmanager/CMStrings.java | 7 -
.../ChangeMasterPasswordDialog.java | 234 ---
.../ConfirmTrustedCertificateDialog.java | 520 -----
.../ConfirmTrustedCertificateUI.java | 71 -
.../credentialmanager/CredentialManagerUI.java | 1512 ---------------
.../CredentialManagerUILauncher.java | 96 -
.../ui/credentialmanager/CryptoFileFilter.java | 73 -
.../GetMasterPasswordDialog.java | 169 --
.../ui/credentialmanager/GetPasswordDialog.java | 168 --
.../credentialmanager/KeyPairsTableModel.java | 213 --
.../NewEditPasswordEntryDialog.java | 397 ----
.../NewKeyPairEntryDialog.java | 304 ---
.../credentialmanager/NewTrustCertsDialog.java | 248 ---
.../credentialmanager/PasswordsTableModel.java | 227 ---
.../SetMasterPasswordDialog.java | 189 --
.../ui/credentialmanager/TableCellRenderer.java | 113 --
.../credentialmanager/TableHeaderRenderer.java | 100 -
.../TrustedCertsTableModel.java | 216 ---
.../ViewCertDetailsDialog.java | 509 -----
.../ViewUsernamePasswordEntryDialog.java | 199 --
.../WarnUserAboutJCEPolicyDialog.java | 223 ---
.../action/CredentialManagerAction.java | 68 -
.../menu/CredentialManagerMenu.java | 70 -
.../AskUserJavaTruststorePasswordProvider.java | 46 -
.../password/AskUserMasterPasswordProvider.java | 55 -
...kUserServiceUsernameAndPasswordProvider.java | 23 -
.../AskUserTrustConfirmationProvider.java | 35 -
.../password/GetPasswordDialog.java | 228 ---
.../password/SimpleMasterPasswordProvider.java | 54 -
.../password/UIMasterPasswordProvider.java | 126 --
.../password/UIUsernamePasswordProvider.java | 92 -
.../startup/InitialiseSSLStartupHook.java | 64 -
.../SetCredManAuthenticatorStartupHook.java | 24 -
.../toolbar/CredentialManagerToolbarAction.java | 44 -
.../CredentialManagerToolbarSection.java | 38 -
.../ui/credentialmanager/CMStrings.java | 26 +
.../ChangeMasterPasswordDialog.java | 233 +++
.../ConfirmTrustedCertificateDialog.java | 519 +++++
.../ConfirmTrustedCertificateUI.java | 70 +
.../credentialmanager/CredentialManagerUI.java | 1511 +++++++++++++++
.../CredentialManagerUILauncher.java | 95 +
.../ui/credentialmanager/CryptoFileFilter.java | 72 +
.../GetMasterPasswordDialog.java | 168 ++
.../ui/credentialmanager/GetPasswordDialog.java | 167 ++
.../credentialmanager/KeyPairsTableModel.java | 212 ++
.../NewEditPasswordEntryDialog.java | 396 ++++
.../NewKeyPairEntryDialog.java | 303 +++
.../credentialmanager/NewTrustCertsDialog.java | 247 +++
.../credentialmanager/PasswordsTableModel.java | 226 +++
.../SetMasterPasswordDialog.java | 188 ++
.../ui/credentialmanager/TableCellRenderer.java | 112 ++
.../credentialmanager/TableHeaderRenderer.java | 94 +
.../TrustedCertsTableModel.java | 215 +++
.../ViewCertDetailsDialog.java | 508 +++++
.../ViewUsernamePasswordEntryDialog.java | 198 ++
.../WarnUserAboutJCEPolicyDialog.java | 222 +++
.../action/CredentialManagerAction.java | 67 +
.../menu/CredentialManagerMenu.java | 69 +
.../AskUserJavaTruststorePasswordProvider.java | 45 +
.../password/AskUserMasterPasswordProvider.java | 54 +
...kUserServiceUsernameAndPasswordProvider.java | 42 +
.../AskUserTrustConfirmationProvider.java | 34 +
.../password/GetPasswordDialog.java | 227 +++
.../password/SimpleMasterPasswordProvider.java | 53 +
.../password/UIMasterPasswordProvider.java | 125 ++
.../password/UIUsernamePasswordProvider.java | 111 ++
.../startup/InitialiseSSLStartupHook.java | 63 +
.../SetCredManAuthenticatorStartupHook.java | 43 +
.../toolbar/CredentialManagerToolbarAction.java | 43 +
.../CredentialManagerToolbarSection.java | 37 +
...rity.credentialmanager.CredentialProviderSPI | 3 -
.../net.sf.taverna.t2.ui.menu.MenuComponent | 3 -
.../net.sf.taverna.t2.workbench.StartupSPI | 2 -
...rity.credentialmanager.CredentialProviderSPI | 3 +
.../org.apache.taverna.ui.menu.MenuComponent | 3 +
.../org.apache.taverna.workbench.StartupSPI | 2 +
.../credential-manager-ui-context-osgi.xml | 18 +-
.../spring/credential-manager-ui-context.xml | 24 +-
.../DataManagementConfigurationPanel.java | 304 ---
.../DataManagementConfigurationUIFactory.java | 64 -
.../DataManagementConfigurationPanel.java | 303 +++
.../DataManagementConfigurationUIFactory.java | 63 +
...rkbench.configuration.ConfigurationUIFactory | 1 -
...rkbench.configuration.ConfigurationUIFactory | 1 +
.../data-management-config-ui-context-osgi.xml | 2 +-
.../data-management-config-ui-context.xml | 2 +-
.../actions/EditNestedDataflowAction.java | 46 -
.../menu/EditNestedDataflowMenuAction.java | 28 -
.../DataflowActivityIcon.java | 57 -
.../DataflowTemplateService.java | 54 -
.../views/DataflowActivityContextualView.java | 140 --
.../views/DataflowActivityViewFactory.java | 93 -
.../file/importworkflow/DataflowMerger.java | 124 --
.../file/importworkflow/MergeException.java | 22 -
.../actions/AddNestedWorkflowAction.java | 59 -
.../actions/ImportWorkflowAction.java | 59 -
.../actions/MergeWorkflowAction.java | 58 -
.../actions/OpenSourceWorkflowAction.java | 139 --
.../actions/ReplaceNestedWorkflowAction.java | 84 -
.../gui/ImportWorkflowWizard.java | 1272 ------------
.../menu/AddNestedWorkflowMenuAction.java | 104 -
.../menu/ImportWorkflowMenuAction.java | 98 -
.../menu/MergeWorkflowMenuAction.java | 65 -
.../menu/ReplaceNestedWorkflowMenuAction.java | 76 -
.../actions/EditNestedDataflowAction.java | 46 +
.../menu/EditNestedDataflowMenuAction.java | 28 +
.../DataflowActivityIcon.java | 57 +
.../DataflowTemplateService.java | 60 +
.../views/DataflowActivityContextualView.java | 140 ++
.../views/DataflowActivityViewFactory.java | 93 +
.../file/importworkflow/DataflowMerger.java | 124 ++
.../file/importworkflow/MergeException.java | 22 +
.../actions/AddNestedWorkflowAction.java | 59 +
.../actions/ImportWorkflowAction.java | 59 +
.../actions/MergeWorkflowAction.java | 58 +
.../actions/OpenSourceWorkflowAction.java | 139 ++
.../actions/ReplaceNestedWorkflowAction.java | 84 +
.../gui/ImportWorkflowWizard.java | 1272 ++++++++++++
.../menu/AddNestedWorkflowMenuAction.java | 104 +
.../menu/ImportWorkflowMenuAction.java | 98 +
.../menu/MergeWorkflowMenuAction.java | 65 +
.../menu/ReplaceNestedWorkflowMenuAction.java | 76 +
...rvicedescriptions.ServiceDescriptionProvider | 1 -
.../net.sf.taverna.t2.ui.menu.MenuComponent | 9 -
...a.t2.workbench.activityicons.ActivityIconSPI | 1 -
...t2.workbench.file.DataflowPersistenceHandler | 1 -
...ntextualviews.activity.ContextualViewFactory | 1 -
...rvicedescriptions.ServiceDescriptionProvider | 1 +
.../org.apache.taverna.ui.menu.MenuComponent | 9 +
...erna.workbench.activityicons.ActivityIconSPI | 1 +
...na.workbench.file.DataflowPersistenceHandler | 1 +
...ntextualviews.activity.ContextualViewFactory | 1 +
.../dataflow-activity-ui-context-osgi.xml | 26 +-
.../spring/dataflow-activity-ui-context.xml | 18 +-
.../file/importworkflow/AbstractTestHelper.java | 266 ---
.../file/importworkflow/TestPortMerge.java | 38 -
.../file/importworkflow/TestRename.java | 58 -
.../file/importworkflow/TestSimpleMerge.java | 98 -
.../file/importworkflow/TestTestHelper.java | 24 -
.../gui/ImportWizardLauncher.java | 24 -
.../file/importworkflow/AbstractTestHelper.java | 266 +++
.../file/importworkflow/TestPortMerge.java | 39 +
.../file/importworkflow/TestRename.java | 59 +
.../file/importworkflow/TestSimpleMerge.java | 99 +
.../file/importworkflow/TestTestHelper.java | 24 +
.../gui/ImportWizardLauncher.java | 25 +
.../design/actions/AddConditionAction.java | 82 -
.../design/actions/AddDataflowInputAction.java | 96 -
.../design/actions/AddDataflowOutputAction.java | 90 -
.../design/actions/DataflowEditAction.java | 57 -
.../actions/EditDataflowInputPortAction.java | 115 --
.../actions/EditDataflowOutputPortAction.java | 95 -
.../design/actions/RemoveConditionAction.java | 69 -
.../actions/RemoveDataflowInputPortAction.java | 85 -
.../actions/RemoveDataflowOutputPortAction.java | 85 -
.../design/actions/RemoveDatalinkAction.java | 68 -
.../design/actions/RemoveProcessorAction.java | 136 --
.../design/actions/RenameProcessorAction.java | 97 -
.../design/ui/DataflowInputPortPanel.java | 203 --
.../design/ui/DataflowOutputPortPanel.java | 105 -
.../t2/workbench/design/ui/ProcessorPanel.java | 101 -
.../design/actions/AddConditionAction.java | 81 +
.../design/actions/AddDataflowInputAction.java | 95 +
.../design/actions/AddDataflowOutputAction.java | 89 +
.../design/actions/DataflowEditAction.java | 56 +
.../actions/EditDataflowInputPortAction.java | 114 ++
.../actions/EditDataflowOutputPortAction.java | 94 +
.../design/actions/RemoveConditionAction.java | 68 +
.../actions/RemoveDataflowInputPortAction.java | 84 +
.../actions/RemoveDataflowOutputPortAction.java | 84 +
.../design/actions/RemoveDatalinkAction.java | 67 +
.../design/actions/RemoveProcessorAction.java | 135 ++
.../design/actions/RenameProcessorAction.java | 96 +
.../design/ui/DataflowInputPortPanel.java | 202 ++
.../design/ui/DataflowOutputPortPanel.java | 104 +
.../workbench/design/ui/ProcessorPanel.java | 100 +
.../DisabledActivityConfigurationAction.java | 119 --
.../menu/ConfigureDisabledMenuAction.java | 52 -
.../views/DisabledActivityViewFactory.java | 80 -
.../disabled/views/DisabledConfigView.java | 142 --
.../disabled/views/DisabledContextualView.java | 128 --
.../DisabledActivityConfigurationAction.java | 119 ++
.../menu/ConfigureDisabledMenuAction.java | 52 +
.../views/DisabledActivityViewFactory.java | 80 +
.../disabled/views/DisabledConfigView.java | 142 ++
.../disabled/views/DisabledContextualView.java | 128 ++
.../net.sf.taverna.t2.ui.menu.MenuComponent | 1 -
...ntextualviews.activity.ContextualViewFactory | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 1 +
...ntextualviews.activity.ContextualViewFactory | 1 +
.../disabled-activity-ui-context-osgi.xml | 14 +-
.../spring/disabled-activity-ui-context.xml | 4 +-
.../t2/workbench/edits/CompoundEdit.java | 118 --
.../net/sf/taverna/t2/workbench/edits/Edit.java | 66 -
.../t2/workbench/edits/EditException.java | 42 -
.../taverna/t2/workbench/edits/EditManager.java | 222 ---
.../t2/workbench/edits/package-info.java | 48 -
.../taverna/t2/workflow/edits/AbstractEdit.java | 119 --
.../t2/workflow/edits/AddActivityEdit.java | 55 -
.../edits/AddActivityInputPortMappingEdit.java | 59 -
.../edits/AddActivityOutputPortMappingEdit.java | 59 -
.../taverna/t2/workflow/edits/AddChildEdit.java | 52 -
.../t2/workflow/edits/AddDataLinkEdit.java | 90 -
.../edits/AddIterationStrategyEdit.java | 49 -
.../AddIterationStrategyInputPortEdit.java | 50 -
.../t2/workflow/edits/AddProcessorEdit.java | 45 -
.../edits/AddProcessorInputPortEdit.java | 45 -
.../edits/AddProcessorOutputPortEdit.java | 46 -
.../edits/AddWorkflowInputPortEdit.java | 110 --
.../edits/AddWorkflowOutputPortEdit.java | 111 --
.../t2/workflow/edits/ChangeDepthEdit.java | 104 -
.../workflow/edits/ChangeGranularDepthEdit.java | 49 -
.../t2/workflow/edits/ChangeJsonEdit.java | 50 -
.../edits/ClearIterationStrategyStackEdit.java | 50 -
.../t2/workflow/edits/ConfigureEdit.java | 55 -
.../t2/workflow/edits/RemoveActivityEdit.java | 55 -
.../RemoveActivityInputPortMappingEdit.java | 51 -
.../RemoveActivityOutputPortMappingEdit.java | 51 -
.../t2/workflow/edits/RemoveChildEdit.java | 48 -
.../t2/workflow/edits/RemoveDataLinkEdit.java | 111 --
.../edits/RemoveProcessorInputPortEdit.java | 31 -
.../edits/RemoveProcessorOutputPortEdit.java | 31 -
.../edits/RemoveWorkflowInputPortEdit.java | 107 --
.../edits/RemoveWorkflowOutputPortEdit.java | 105 -
.../taverna/t2/workflow/edits/RenameEdit.java | 136 --
.../edits/ReorderMergePositionsEdit.java | 57 -
.../edits/SetIterationStrategyStackEdit.java | 51 -
.../UpdateDataflowInternalIdentifierEdit.java | 48 -
.../taverna/workbench/edits/CompoundEdit.java | 117 ++
.../apache/taverna/workbench/edits/Edit.java | 65 +
.../taverna/workbench/edits/EditException.java | 41 +
.../taverna/workbench/edits/EditManager.java | 221 +++
.../taverna/workbench/edits/package-info.java | 48 +
.../taverna/workflow/edits/AbstractEdit.java | 118 ++
.../taverna/workflow/edits/AddActivityEdit.java | 54 +
.../edits/AddActivityInputPortMappingEdit.java | 58 +
.../edits/AddActivityOutputPortMappingEdit.java | 58 +
.../taverna/workflow/edits/AddChildEdit.java | 51 +
.../taverna/workflow/edits/AddDataLinkEdit.java | 89 +
.../edits/AddIterationStrategyEdit.java | 48 +
.../AddIterationStrategyInputPortEdit.java | 49 +
.../workflow/edits/AddProcessorEdit.java | 44 +
.../edits/AddProcessorInputPortEdit.java | 44 +
.../edits/AddProcessorOutputPortEdit.java | 45 +
.../edits/AddWorkflowInputPortEdit.java | 109 ++
.../edits/AddWorkflowOutputPortEdit.java | 110 ++
.../taverna/workflow/edits/ChangeDepthEdit.java | 103 +
.../workflow/edits/ChangeGranularDepthEdit.java | 48 +
.../taverna/workflow/edits/ChangeJsonEdit.java | 49 +
.../edits/ClearIterationStrategyStackEdit.java | 49 +
.../taverna/workflow/edits/ConfigureEdit.java | 54 +
.../workflow/edits/RemoveActivityEdit.java | 54 +
.../RemoveActivityInputPortMappingEdit.java | 50 +
.../RemoveActivityOutputPortMappingEdit.java | 50 +
.../taverna/workflow/edits/RemoveChildEdit.java | 47 +
.../workflow/edits/RemoveDataLinkEdit.java | 110 ++
.../edits/RemoveProcessorInputPortEdit.java | 30 +
.../edits/RemoveProcessorOutputPortEdit.java | 30 +
.../edits/RemoveWorkflowInputPortEdit.java | 106 +
.../edits/RemoveWorkflowOutputPortEdit.java | 104 +
.../taverna/workflow/edits/RenameEdit.java | 135 ++
.../edits/ReorderMergePositionsEdit.java | 56 +
.../edits/SetIterationStrategyStackEdit.java | 50 +
.../UpdateDataflowInternalIdentifierEdit.java | 47 +
.../workbench/edits/impl/EditManagerImpl.java | 285 ---
.../edits/impl/menu/AbstractUndoAction.java | 166 --
.../edits/impl/menu/RedoMenuAction.java | 86 -
.../edits/impl/menu/UndoMenuAction.java | 86 -
.../edits/impl/menu/UndoMenuSection.java | 42 -
.../edits/impl/toolbar/EditToolbarSection.java | 36 -
.../edits/impl/toolbar/RedoToolbarAction.java | 46 -
.../edits/impl/toolbar/UndoToolbarAction.java | 46 -
.../workbench/edits/impl/EditManagerImpl.java | 284 +++
.../edits/impl/menu/AbstractUndoAction.java | 165 ++
.../edits/impl/menu/RedoMenuAction.java | 85 +
.../edits/impl/menu/UndoMenuAction.java | 85 +
.../edits/impl/menu/UndoMenuSection.java | 41 +
.../edits/impl/toolbar/EditToolbarSection.java | 35 +
.../edits/impl/toolbar/RedoToolbarAction.java | 45 +
.../edits/impl/toolbar/UndoToolbarAction.java | 45 +
.../net.sf.taverna.t2.ui.menu.MenuComponent | 6 -
...et.sf.taverna.t2.workbench.edits.EditManager | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 6 +
...g.apache.taverna.workbench.edits.EditManager | 1 +
.../META-INF/spring/edits-impl-context-osgi.xml | 4 +-
.../META-INF/spring/edits-impl-context.xml | 14 +-
.../edits/impl/TestEditManagerImpl.java | 258 ---
.../edits/impl/TestEditManagerImpl.java | 257 +++
.../AbstractDataflowPersistenceHandler.java | 69 -
.../taverna/t2/workbench/file/DataflowInfo.java | 108 --
.../file/DataflowPersistenceHandler.java | 152 --
.../taverna/t2/workbench/file/FileManager.java | 573 ------
.../sf/taverna/t2/workbench/file/FileType.java | 67 -
.../file/events/AbstractDataflowEvent.java | 45 -
.../file/events/ClosedDataflowEvent.java | 34 -
.../file/events/ClosingDataflowEvent.java | 45 -
.../workbench/file/events/FileManagerEvent.java | 39 -
.../file/events/OpenedDataflowEvent.java | 34 -
.../file/events/SavedDataflowEvent.java | 34 -
.../file/events/SetCurrentDataflowEvent.java | 35 -
.../file/exceptions/FileException.java | 44 -
.../file/exceptions/OpenException.java | 40 -
.../file/exceptions/OverwriteException.java | 36 -
.../file/exceptions/SaveException.java | 40 -
.../file/exceptions/UnsavedException.java | 38 -
.../AbstractDataflowPersistenceHandler.java | 69 +
.../taverna/workbench/file/DataflowInfo.java | 108 ++
.../file/DataflowPersistenceHandler.java | 152 ++
.../taverna/workbench/file/FileManager.java | 573 ++++++
.../apache/taverna/workbench/file/FileType.java | 67 +
.../file/events/AbstractDataflowEvent.java | 45 +
.../file/events/ClosedDataflowEvent.java | 34 +
.../file/events/ClosingDataflowEvent.java | 45 +
.../workbench/file/events/FileManagerEvent.java | 39 +
.../file/events/OpenedDataflowEvent.java | 34 +
.../file/events/SavedDataflowEvent.java | 34 +
.../file/events/SetCurrentDataflowEvent.java | 35 +
.../file/exceptions/FileException.java | 44 +
.../file/exceptions/OpenException.java | 40 +
.../file/exceptions/OverwriteException.java | 36 +
.../file/exceptions/SaveException.java | 40 +
.../file/exceptions/UnsavedException.java | 38 +
.../DataflowFromDataflowPersistenceHandler.java | 10 +-
.../DataflowPersistenceHandlerRegistry.java | 4 +-
.../workbench/file/impl/FileDataflowInfo.java | 6 +-
.../t2/workbench/file/impl/FileManagerImpl.java | 34 +-
.../workbench/file/impl/FileTypeFileFilter.java | 2 +-
.../workbench/file/impl/MultipleFileTypes.java | 2 +-
.../file/impl/OpenDataflowInProgressDialog.java | 6 +-
.../workbench/file/impl/OpenDataflowInfo.java | 4 +-
.../file/impl/OpenDataflowRunnable.java | 6 +-
.../file/impl/OpenDataflowSwingWorker.java | 4 +-
.../workbench/file/impl/T2DataflowOpener.java | 10 +-
.../t2/workbench/file/impl/T2FlowFileType.java | 2 +-
.../file/impl/WorkflowBundleFileType.java | 2 +-
.../file/impl/WorkflowBundleOpener.java | 10 +-
.../file/impl/WorkflowBundleSaver.java | 10 +-
.../impl/actions/CloseAllWorkflowsAction.java | 6 +-
.../file/impl/actions/CloseWorkflowAction.java | 8 +-
.../file/impl/actions/NewWorkflowAction.java | 4 +-
.../impl/actions/OpenNestedWorkflowAction.java | 6 +-
.../file/impl/actions/OpenWorkflowAction.java | 8 +-
.../impl/actions/OpenWorkflowFromURLAction.java | 4 +-
.../file/impl/actions/PasswordInput.java | 2 +-
.../impl/actions/SaveAllWorkflowsAction.java | 8 +-
.../file/impl/actions/SaveWorkflowAction.java | 20 +-
.../file/impl/actions/SaveWorkflowAsAction.java | 14 +-
.../impl/hooks/CloseWorkflowsOnShutdown.java | 6 +-
.../file/impl/menu/FileCloseAllMenuAction.java | 6 +-
.../file/impl/menu/FileCloseMenuAction.java | 6 +-
.../file/impl/menu/FileNewMenuAction.java | 4 +-
.../impl/menu/FileOpenFromURLMenuAction.java | 4 +-
.../file/impl/menu/FileOpenMenuAction.java | 4 +-
.../file/impl/menu/FileOpenMenuSection.java | 2 +-
.../impl/menu/FileOpenRecentMenuAction.java | 18 +-
.../file/impl/menu/FileSaveAllMenuAction.java | 6 +-
.../file/impl/menu/FileSaveAsMenuAction.java | 4 +-
.../file/impl/menu/FileSaveMenuAction.java | 6 +-
.../file/impl/menu/FileSaveMenuSection.java | 2 +-
.../workbench/file/impl/menu/WorkflowsMenu.java | 16 +-
.../file/impl/toolbar/CloseToolbarAction.java | 6 +-
.../impl/toolbar/FileToolbarMenuSection.java | 4 +-
.../file/impl/toolbar/NewToolbarAction.java | 4 +-
.../file/impl/toolbar/OpenToolbarAction.java | 4 +-
.../OpenWorkflowFromURLToolbarAction.java | 4 +-
.../file/impl/toolbar/SaveToolbarAction.java | 6 +-
.../net.sf.taverna.t2.ui.menu.MenuComponent | 20 -
.../net.sf.taverna.t2.workbench.ShutdownSPI | 1 -
...t2.workbench.file.DataflowPersistenceHandler | 2 -
...net.sf.taverna.t2.workbench.file.FileManager | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 20 +
.../org.apache.taverna.workbench.ShutdownSPI | 1 +
...na.workbench.file.DataflowPersistenceHandler | 2 +
...rg.apache.taverna.workbench.file.FileManager | 1 +
.../META-INF/spring/file-impl-context-osgi.xml | 14 +-
.../META-INF/spring/file-impl-context.xml | 48 +-
.../t2/workbench/file/impl/FileManagerTest.java | 24 +-
.../models/graph/DefaultGraphEventManager.java | 271 ---
.../t2/workbench/models/graph/DotWriter.java | 253 ---
.../t2/workbench/models/graph/Graph.java | 165 --
.../models/graph/GraphColorManager.java | 75 -
.../workbench/models/graph/GraphController.java | 1276 ------------
.../t2/workbench/models/graph/GraphEdge.java | 137 --
.../t2/workbench/models/graph/GraphElement.java | 430 -----
.../models/graph/GraphEventManager.java | 47 -
.../t2/workbench/models/graph/GraphNode.java | 153 --
.../models/graph/GraphShapeElement.java | 119 --
.../workbench/models/graph/dot/GraphLayout.java | 326 ----
.../t2/workbench/models/graph/svg/SVGGraph.java | 439 -----
.../models/graph/svg/SVGGraphController.java | 552 ------
.../models/graph/svg/SVGGraphEdge.java | 311 ---
.../graph/svg/SVGGraphElementDelegate.java | 178 --
.../models/graph/svg/SVGGraphNode.java | 611 ------
.../models/graph/svg/SVGGraphSettings.java | 28 -
.../models/graph/svg/SVGMonitorShape.java | 40 -
.../t2/workbench/models/graph/svg/SVGShape.java | 29 -
.../t2/workbench/models/graph/svg/SVGUtil.java | 477 -----
.../graph/svg/event/SVGEventListener.java | 56 -
.../svg/event/SVGMouseClickEventListener.java | 45 -
.../svg/event/SVGMouseDownEventListener.java | 45 -
.../svg/event/SVGMouseMovedEventListener.java | 46 -
.../svg/event/SVGMouseOutEventListener.java | 46 -
.../svg/event/SVGMouseOverEventListener.java | 46 -
.../svg/event/SVGMouseUpEventListener.java | 46 -
.../models/graph/DefaultGraphEventManager.java | 271 +++
.../workbench/models/graph/DotWriter.java | 253 +++
.../taverna/workbench/models/graph/Graph.java | 165 ++
.../models/graph/GraphColorManager.java | 75 +
.../workbench/models/graph/GraphController.java | 1276 ++++++++++++
.../workbench/models/graph/GraphEdge.java | 137 ++
.../workbench/models/graph/GraphElement.java | 430 +++++
.../models/graph/GraphEventManager.java | 47 +
.../workbench/models/graph/GraphNode.java | 153 ++
.../models/graph/GraphShapeElement.java | 119 ++
.../workbench/models/graph/dot/GraphLayout.java | 326 ++++
.../workbench/models/graph/svg/SVGGraph.java | 439 +++++
.../models/graph/svg/SVGGraphController.java | 552 ++++++
.../models/graph/svg/SVGGraphEdge.java | 311 +++
.../graph/svg/SVGGraphElementDelegate.java | 178 ++
.../models/graph/svg/SVGGraphNode.java | 611 ++++++
.../models/graph/svg/SVGGraphSettings.java | 28 +
.../models/graph/svg/SVGMonitorShape.java | 40 +
.../workbench/models/graph/svg/SVGShape.java | 29 +
.../workbench/models/graph/svg/SVGUtil.java | 477 +++++
.../graph/svg/event/SVGEventListener.java | 56 +
.../svg/event/SVGMouseClickEventListener.java | 45 +
.../svg/event/SVGMouseDownEventListener.java | 45 +
.../svg/event/SVGMouseMovedEventListener.java | 46 +
.../svg/event/SVGMouseOutEventListener.java | 46 +
.../svg/event/SVGMouseOverEventListener.java | 46 +
.../svg/event/SVGMouseUpEventListener.java | 46 +
.../models/graph/GraphControllerTest.java | 81 -
.../workbench/models/graph/GraphEdgeTest.java | 129 --
.../models/graph/GraphElementTest.java | 148 --
.../workbench/models/graph/GraphNodeTest.java | 179 --
.../t2/workbench/models/graph/GraphTest.java | 138 --
.../models/graph/GraphControllerTest.java | 85 +
.../workbench/models/graph/GraphEdgeTest.java | 132 ++
.../models/graph/GraphElementTest.java | 151 ++
.../workbench/models/graph/GraphNodeTest.java | 182 ++
.../workbench/models/graph/GraphTest.java | 139 ++
.../views/graph/GraphViewComponent.java | 56 +-
.../views/graph/GraphViewComponentFactory.java | 16 +-
.../views/graph/actions/AddWFInputAction.java | 10 +-
.../views/graph/actions/AddWFOutputAction.java | 10 +-
.../actions/DeleteGraphComponentAction.java | 26 +-
.../RenameWFInputOutputProcessorAction.java | 22 +-
.../graph/config/GraphViewConfiguration.java | 4 +-
.../config/GraphViewConfigurationPanel.java | 16 +-
.../views/graph/menu/AddWFInputMenuAction.java | 6 +-
.../views/graph/menu/AddWFOutputMenuAction.java | 6 +-
.../menu/DeleteGraphComponentMenuAction.java | 6 +-
.../workbench/views/graph/menu/DiagramMenu.java | 4 +-
.../graph/menu/DiagramSaveMenuSection.java | 2 +-
.../graph/menu/DiagramZoomMenuSection.java | 2 +-
.../views/graph/menu/GraphCopyMenuSection.java | 2 +-
.../graph/menu/GraphDeleteMenuSection.java | 2 +-
.../graph/menu/GraphDetailsMenuSection.java | 2 +-
.../views/graph/menu/GraphEditMenuSection.java | 2 +-
.../views/graph/menu/GraphMenuSection.java | 2 +-
.../workbench/views/graph/menu/InsertMenu.java | 4 +-
.../RenameWFInputOutputProcessorMenuAction.java | 6 +-
.../views/graph/menu/ResetDiagramAction.java | 4 +-
.../graph/menu/ResetDiagramMenuAction.java | 2 +-
.../views/graph/menu/SaveGraphImageSubMenu.java | 28 +-
.../views/graph/menu/ZoomInAction.java | 4 +-
.../views/graph/menu/ZoomInMenuAction.java | 2 +-
.../views/graph/menu/ZoomOutAction.java | 4 +-
.../views/graph/menu/ZoomOutMenuAction.java | 2 +-
.../graph/toolbar/AddWFInputToolbarAction.java | 6 +-
.../graph/toolbar/AddWFOutputToolbarAction.java | 6 +-
.../DeleteGraphComponentToolbarAction.java | 6 +-
.../toolbar/GraphDeleteToolbarSection.java | 4 +-
.../graph/toolbar/GraphEditToolbarSection.java | 4 +-
...nameWFInputOutputProcessorToolbarAction.java | 6 +-
.../net.sf.taverna.t2.ui.menu.MenuComponent | 29 -
...rkbench.configuration.ConfigurationUIFactory | 1 -
....t2.workbench.ui.zaria.UIComponentFactorySPI | 1 -
...taverna.t2.workbench.ui.zaria.UIComponentSPI | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 29 +
...rkbench.configuration.ConfigurationUIFactory | 1 +
...rna.workbench.ui.zaria.UIComponentFactorySPI | 1 +
...he.taverna.workbench.ui.zaria.UIComponentSPI | 1 +
.../META-INF/spring/graph-view-context-osgi.xml | 14 +-
.../META-INF/spring/graph-view-context.xml | 52 +-
.../t2/workbench/helper/HelpCollator.java | 307 ---
.../t2/workbench/helper/HelpEnabledDialog.java | 101 -
.../sf/taverna/t2/workbench/helper/Helper.java | 187 --
.../helper/NonBlockedHelpEnabledDialog.java | 40 -
.../taverna/workbench/helper/HelpCollator.java | 326 ++++
.../workbench/helper/HelpEnabledDialog.java | 117 ++
.../apache/taverna/workbench/helper/Helper.java | 203 ++
.../helper/NonBlockedHelpEnabledDialog.java | 56 +
.../config/HttpProxyConfigurationPanel.java | 582 ------
.../config/HttpProxyConfigurationUIFactory.java | 56 -
.../config/HttpProxyConfigurationPanel.java | 582 ++++++
.../config/HttpProxyConfigurationUIFactory.java | 56 +
...rkbench.configuration.ConfigurationUIFactory | 1 -
...rkbench.configuration.ConfigurationUIFactory | 1 +
.../spring/httpproxy-config-context.xml | 2 +-
.../net/sf/taverna/t2/lang/io/StreamCopier.java | 69 -
.../sf/taverna/t2/lang/io/StreamDevourer.java | 106 -
.../apache/taverna/lang/io/StreamCopier.java | 68 +
.../apache/taverna/lang/io/StreamDevourer.java | 105 +
.../IterationStrategyIcons.java | 48 -
.../IterationStrategyConfigurationDialog.java | 148 --
.../IterationStrategyContextualView.java | 231 ---
.../IterationStrategyContextualViewFactory.java | 54 -
.../editor/IterationStrategyCellRenderer.java | 74 -
.../editor/IterationStrategyEditor.java | 247 ---
.../editor/IterationStrategyEditorControl.java | 439 -----
.../editor/IterationStrategyTree.java | 106 -
.../IterationStrategyConfigureMenuAction.java | 65 -
.../IterationStrategyIcons.java | 48 +
.../IterationStrategyConfigurationDialog.java | 148 ++
.../IterationStrategyContextualView.java | 231 +++
.../IterationStrategyContextualViewFactory.java | 54 +
.../editor/IterationStrategyCellRenderer.java | 74 +
.../editor/IterationStrategyEditor.java | 247 +++
.../editor/IterationStrategyEditorControl.java | 439 +++++
.../editor/IterationStrategyTree.java | 106 +
.../IterationStrategyConfigureMenuAction.java | 65 +
.../net.sf.taverna.t2.ui.menu.MenuComponent | 1 -
...ntextualviews.activity.ContextualViewFactory | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 1 +
...ntextualviews.activity.ContextualViewFactory | 1 +
.../iteration-strategy-ui-context-osgi.xml | 6 +-
.../spring/iteration-strategy-ui-context.xml | 2 +-
.../icons/crossproducticon.png | Bin 831 -> 0 bytes
.../iterationstrategy/icons/dotproducticon.png | Bin 663 -> 0 bytes
.../iterationstrategy/icons/leafnodeicon.png | Bin 507 -> 0 bytes
.../icons/crossproducticon.png | Bin 0 -> 831 bytes
.../iterationstrategy/icons/dotproducticon.png | Bin 0 -> 663 bytes
.../iterationstrategy/icons/leafnodeicon.png | Bin 0 -> 507 bytes
.../editor/RunIterationStrategyEditor.java | 56 -
.../editor/RunIterationStrategyEditor.java | 57 +
.../t2/workbench/loop/ActivityGenerator.java | 194 --
.../t2/workbench/loop/AddLoopFactory.java | 125 --
.../t2/workbench/loop/LoopAddMenuAction.java | 73 -
.../workbench/loop/LoopConfigurationPanel.java | 588 ------
.../t2/workbench/loop/LoopConfigureAction.java | 262 ---
.../workbench/loop/LoopConfigureMenuAction.java | 97 -
.../t2/workbench/loop/LoopContextualView.java | 172 --
.../loop/LoopContextualViewFactory.java | 53 -
.../t2/workbench/loop/LoopRemoveMenuAction.java | 92 -
.../workbench/loop/comparisons/Comparison.java | 47 -
.../t2/workbench/loop/comparisons/EqualTo.java | 40 -
.../loop/comparisons/IsGreaterThan.java | 40 -
.../workbench/loop/comparisons/IsLessThan.java | 40 -
.../t2/workbench/loop/comparisons/Matches.java | 40 -
.../workbench/loop/comparisons/NotEqualTo.java | 40 -
.../workbench/loop/comparisons/NotMatches.java | 40 -
.../workbench/loop/ActivityGenerator.java | 194 ++
.../taverna/workbench/loop/AddLoopFactory.java | 125 ++
.../workbench/loop/LoopAddMenuAction.java | 73 +
.../workbench/loop/LoopConfigurationPanel.java | 588 ++++++
.../workbench/loop/LoopConfigureAction.java | 262 +++
.../workbench/loop/LoopConfigureMenuAction.java | 97 +
.../workbench/loop/LoopContextualView.java | 172 ++
.../loop/LoopContextualViewFactory.java | 53 +
.../workbench/loop/LoopRemoveMenuAction.java | 92 +
.../workbench/loop/comparisons/Comparison.java | 47 +
.../workbench/loop/comparisons/EqualTo.java | 40 +
.../loop/comparisons/IsGreaterThan.java | 40 +
.../workbench/loop/comparisons/IsLessThan.java | 40 +
.../workbench/loop/comparisons/Matches.java | 40 +
.../workbench/loop/comparisons/NotEqualTo.java | 40 +
.../workbench/loop/comparisons/NotMatches.java | 40 +
.../net.sf.taverna.t2.ui.menu.MenuComponent | 3 -
....ui.views.contextualviews.AddLayerFactorySPI | 1 -
...ntextualviews.activity.ContextualViewFactory | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 3 +
....ui.views.contextualviews.AddLayerFactorySPI | 1 +
...ntextualviews.activity.ContextualViewFactory | 1 +
.../META-INF/spring/loop-ui-context-osgi.xml | 10 +-
.../META-INF/spring/loop-ui-context.xml | 10 +-
.../t2/workbench/loop/ShowContextualView.java | 121 --
.../workbench/loop/ShowContextualView.java | 121 ++
.../ui/menu/AbstractContextualMenuAction.java | 64 -
.../net/sf/taverna/t2/ui/menu/AbstractMenu.java | 123 --
.../taverna/t2/ui/menu/AbstractMenuAction.java | 135 --
.../taverna/t2/ui/menu/AbstractMenuCustom.java | 144 --
.../sf/taverna/t2/ui/menu/AbstractMenuItem.java | 144 --
.../t2/ui/menu/AbstractMenuOptionGroup.java | 79 -
.../taverna/t2/ui/menu/AbstractMenuSection.java | 113 --
.../taverna/t2/ui/menu/AbstractMenuToggle.java | 132 --
.../sf/taverna/t2/ui/menu/AbstractToolBar.java | 74 -
.../t2/ui/menu/ContextualMenuComponent.java | 35 -
.../taverna/t2/ui/menu/ContextualSelection.java | 48 -
.../t2/ui/menu/DefaultContextualMenu.java | 53 -
.../sf/taverna/t2/ui/menu/DefaultMenuBar.java | 50 -
.../sf/taverna/t2/ui/menu/DefaultToolBar.java | 51 -
.../sf/taverna/t2/ui/menu/DesignOnlyAction.java | 32 -
.../t2/ui/menu/DesignOrResultsAction.java | 32 -
.../sf/taverna/t2/ui/menu/MenuComponent.java | 277 ---
.../net/sf/taverna/t2/ui/menu/MenuManager.java | 339 ----
.../net/sf/taverna/t2/ui/menu/package-info.java | 141 --
.../ui/menu/AbstractContextualMenuAction.java | 63 +
.../apache/taverna/ui/menu/AbstractMenu.java | 122 ++
.../taverna/ui/menu/AbstractMenuAction.java | 134 ++
.../taverna/ui/menu/AbstractMenuCustom.java | 143 ++
.../taverna/ui/menu/AbstractMenuItem.java | 143 ++
.../ui/menu/AbstractMenuOptionGroup.java | 78 +
.../taverna/ui/menu/AbstractMenuSection.java | 112 ++
.../taverna/ui/menu/AbstractMenuToggle.java | 131 ++
.../apache/taverna/ui/menu/AbstractToolBar.java | 73 +
.../ui/menu/ContextualMenuComponent.java | 54 +
.../taverna/ui/menu/ContextualSelection.java | 67 +
.../taverna/ui/menu/DefaultContextualMenu.java | 52 +
.../apache/taverna/ui/menu/DefaultMenuBar.java | 49 +
.../apache/taverna/ui/menu/DefaultToolBar.java | 50 +
.../taverna/ui/menu/DesignOnlyAction.java | 31 +
.../taverna/ui/menu/DesignOrResultsAction.java | 31 +
.../apache/taverna/ui/menu/MenuComponent.java | 276 +++
.../org/apache/taverna/ui/menu/MenuManager.java | 338 ++++
.../apache/taverna/ui/menu/package-info.java | 141 ++
.../net.sf.taverna.t2.ui.menu.MenuComponent | 4 -
.../org.apache.taverna.ui.menu.MenuComponent | 4 +
.../META-INF/spring/menu-api-context.xml | 6 +-
.../t2/ui/menu/impl/MenuManagerImpl.java | 880 ---------
.../t2/workbench/ui/impl/menu/AdvancedMenu.java | 44 -
.../t2/workbench/ui/impl/menu/EditMenu.java | 43 -
.../ui/impl/menu/FeedbackMenuAction.java | 75 -
.../t2/workbench/ui/impl/menu/FileMenu.java | 48 -
.../t2/workbench/ui/impl/menu/HelpMenu.java | 44 -
.../ui/impl/menu/OnlineHelpMenuAction.java | 68 -
.../ui/impl/menu/ShowLogsAndDataMenuAction.java | 89 -
.../ui/impl/menu/ViewShowMenuSection.java | 40 -
.../taverna/ui/menu/impl/MenuManagerImpl.java | 879 +++++++++
.../workbench/ui/impl/menu/AdvancedMenu.java | 43 +
.../workbench/ui/impl/menu/EditMenu.java | 42 +
.../ui/impl/menu/FeedbackMenuAction.java | 74 +
.../workbench/ui/impl/menu/FileMenu.java | 47 +
.../workbench/ui/impl/menu/HelpMenu.java | 43 +
.../ui/impl/menu/OnlineHelpMenuAction.java | 67 +
.../ui/impl/menu/ShowLogsAndDataMenuAction.java | 108 ++
.../ui/impl/menu/ViewShowMenuSection.java | 39 +
.../net.sf.taverna.t2.ui.menu.MenuManager | 1 -
.../org.apache.taverna.ui.menu.MenuManager | 1 +
.../META-INF/spring/menu-impl-context-osgi.xml | 6 +-
.../META-INF/spring/menu-impl-context.xml | 16 +-
.../AbstractConnectPortMenuActions.java | 267 ---
.../activityport/ActivityInputPortSection.java | 67 -
.../activityport/ActivityOutputPortSection.java | 67 -
.../AddInputPortDefaultValueAction.java | 150 --
.../ConnectInputPortMenuActions.java | 41 -
.../ConnectOutputPortMenuActions.java | 41 -
.../items/activityport/ConnectPortsAction.java | 68 -
.../CreateAndConnectDataflowPortAction.java | 226 ---
.../SetConstantInputPortValueMenuAction.java | 73 -
.../SetDefaultInputPortValueAction.java | 171 --
.../annotated/AnnotatedConfigureMenuAction.java | 77 -
.../ConfigureRunningContextualMenuSection.java | 50 -
.../items/contextualviews/ConfigureSection.java | 61 -
.../menu/items/contextualviews/EditSection.java | 73 -
.../items/contextualviews/InsertSection.java | 63 -
.../items/contextualviews/PasteMenuAction.java | 74 -
.../ShowConfigureMenuAction.java | 165 --
.../ShowDetailsContextualMenuAction.java | 65 -
.../contextualviews/ShowDetailsMenuAction.java | 81 -
.../ShowReportsContextualMenuAction.java | 103 -
.../items/controllink/ConditionSection.java | 70 -
.../controllink/RemoveConditionMenuAction.java | 67 -
.../t2/ui/menu/items/datalink/LinkSection.java | 73 -
.../items/datalink/RemoveLinkMenuAction.java | 66 -
.../ConnectDataflowInputPortMenuActions.java | 42 -
.../ConnectDataflowOutputPortMenuActions.java | 42 -
.../ports/EditDataflowInputPortMenuAction.java | 68 -
.../ports/EditDataflowOutputPortMenuAction.java | 68 -
.../RemoveDataflowInputPortMenuAction.java | 68 -
.../RemoveDataflowOutputPortMenuAction.java | 68 -
.../items/ports/WorkflowInputPortSection.java | 73 -
.../items/ports/WorkflowOutputPortSection.java | 73 -
.../items/processor/ConditionMenuActions.java | 118 --
.../menu/items/processor/ProcessorSection.java | 58 -
.../processor/RemoveProcessorMenuAction.java | 67 -
.../processor/RenameProcessorMenuAction.java | 68 -
.../items/workflow/CreateInputMenuAction.java | 62 -
.../items/workflow/CreateOutputMenuAction.java | 62 -
.../WorkflowServiceTemplatesSection.java | 76 -
.../AbstractConnectPortMenuActions.java | 267 +++
.../activityport/ActivityInputPortSection.java | 67 +
.../activityport/ActivityOutputPortSection.java | 67 +
.../AddInputPortDefaultValueAction.java | 150 ++
.../ConnectInputPortMenuActions.java | 41 +
.../ConnectOutputPortMenuActions.java | 41 +
.../items/activityport/ConnectPortsAction.java | 68 +
.../CreateAndConnectDataflowPortAction.java | 226 +++
.../SetConstantInputPortValueMenuAction.java | 73 +
.../SetDefaultInputPortValueAction.java | 171 ++
.../annotated/AnnotatedConfigureMenuAction.java | 77 +
.../ConfigureRunningContextualMenuSection.java | 50 +
.../items/contextualviews/ConfigureSection.java | 61 +
.../menu/items/contextualviews/EditSection.java | 73 +
.../items/contextualviews/InsertSection.java | 63 +
.../items/contextualviews/PasteMenuAction.java | 74 +
.../ShowConfigureMenuAction.java | 165 ++
.../ShowDetailsContextualMenuAction.java | 65 +
.../contextualviews/ShowDetailsMenuAction.java | 81 +
.../ShowReportsContextualMenuAction.java | 103 +
.../items/controllink/ConditionSection.java | 70 +
.../controllink/RemoveConditionMenuAction.java | 67 +
.../ui/menu/items/datalink/LinkSection.java | 73 +
.../items/datalink/RemoveLinkMenuAction.java | 66 +
.../ConnectDataflowInputPortMenuActions.java | 42 +
.../ConnectDataflowOutputPortMenuActions.java | 42 +
.../ports/EditDataflowInputPortMenuAction.java | 68 +
.../ports/EditDataflowOutputPortMenuAction.java | 68 +
.../RemoveDataflowInputPortMenuAction.java | 68 +
.../RemoveDataflowOutputPortMenuAction.java | 68 +
.../items/ports/WorkflowInputPortSection.java | 73 +
.../items/ports/WorkflowOutputPortSection.java | 73 +
.../items/processor/ConditionMenuActions.java | 118 ++
.../menu/items/processor/ProcessorSection.java | 58 +
.../processor/RemoveProcessorMenuAction.java | 67 +
.../processor/RenameProcessorMenuAction.java | 68 +
.../items/workflow/CreateInputMenuAction.java | 62 +
.../items/workflow/CreateOutputMenuAction.java | 62 +
.../WorkflowServiceTemplatesSection.java | 76 +
.../net.sf.taverna.t2.ui.menu.MenuComponent | 46 -
.../org.apache.taverna.ui.menu.MenuComponent | 46 +
.../META-INF/spring/menu-items-context-osgi.xml | 20 +-
.../META-INF/spring/menu-items-context.xml | 68 +-
.../views/monitor/MonitorViewComponent.java | 168 --
.../views/monitor/graph/GraphMonitor.java | 140 --
.../views/monitor/graph/GraphMonitorNode.java | 115 --
.../monitor/graph/MonitorGraphComponent.java | 378 ----
.../progressreport/TableMonitorComponent.java | 100 -
.../WorkflowRunProgressTreeCellRenderer.java | 96 -
.../WorkflowRunProgressTreeTable.java | 112 --
.../WorkflowRunProgressTreeTableModel.java | 279 ---
.../views/monitor/MonitorViewComponent.java | 168 ++
.../views/monitor/graph/GraphMonitor.java | 140 ++
.../views/monitor/graph/GraphMonitorNode.java | 115 ++
.../monitor/graph/MonitorGraphComponent.java | 378 ++++
.../progressreport/TableMonitorComponent.java | 100 +
.../WorkflowRunProgressTreeCellRenderer.java | 96 +
.../WorkflowRunProgressTreeTable.java | 112 ++
.../WorkflowRunProgressTreeTableModel.java | 279 +++
....t2.workbench.ui.zaria.UIComponentFactorySPI | 1 -
...taverna.t2.workbench.ui.zaria.UIComponentSPI | 1 -
...rna.workbench.ui.zaria.UIComponentFactorySPI | 1 +
...he.taverna.workbench.ui.zaria.UIComponentSPI | 1 +
.../ParallelizeConfigurationPanel.java | 99 -
.../parallelize/ParallelizeConfigureAction.java | 185 --
.../ParallelizeConfigureMenuAction.java | 77 -
.../parallelize/ParallelizeContextualView.java | 130 --
.../ParallelizeContextualViewFactory.java | 56 -
.../ParallelizeConfigurationPanel.java | 118 ++
.../parallelize/ParallelizeConfigureAction.java | 201 ++
.../ParallelizeConfigureMenuAction.java | 76 +
.../parallelize/ParallelizeContextualView.java | 129 ++
.../ParallelizeContextualViewFactory.java | 55 +
.../net.sf.taverna.t2.ui.menu.MenuComponent | 1 -
...ntextualviews.activity.ContextualViewFactory | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 1 +
...ntextualviews.activity.ContextualViewFactory | 1 +
.../spring/parallelize-ui-context-osgi.xml | 6 +-
.../META-INF/spring/parallelize-ui-context.xml | 4 +-
.../model/BioCataloguePluginConstants.java | 77 -
.../model/HTTPMethodInterpreter.java | 46 -
.../model/LoadingExpandedResource.java | 41 -
.../biocatalogue/model/LoadingResource.java | 39 -
.../net/sf/taverna/biocatalogue/model/Pair.java | 30 -
.../sf/taverna/biocatalogue/model/Resource.java | 506 -----
.../biocatalogue/model/ResourceManager.java | 326 ----
.../model/ResourcePreviewContent.java | 38 -
.../model/SoapOperationIdentity.java | 77 -
.../model/SoapOperationPortIdentity.java | 26 -
.../model/SoapProcessorIdentity.java | 27 -
.../biocatalogue/model/SoapServiceIdentity.java | 45 -
.../net/sf/taverna/biocatalogue/model/Tag.java | 218 ---
.../net/sf/taverna/biocatalogue/model/Util.java | 793 --------
.../BeanForPOSTToFilteredIndex.java | 12 -
.../model/connectivity/BeansForJSONLiteAPI.java | 84 -
.../connectivity/BioCatalogueAPIRequest.java | 47 -
.../model/connectivity/BioCatalogueClient.java | 785 --------
.../model/connectivity/ServerResponse.java | 40 -
.../connectivity/ServerResponseStream.java | 30 -
.../biocatalogue/model/search/SearchEngine.java | 221 ---
.../model/search/SearchInstance.java | 490 -----
.../model/search/SearchInstanceTracker.java | 57 -
.../model/search/SearchOptions.java | 70 -
.../model/search/SearchResults.java | 214 ---
.../model/search/ServiceFilteringSettings.java | 184 --
.../biocatalogue/test/AnnotationBean.java | 52 -
.../biocatalogue/test/DrawDefaultIconTest.java | 38 -
.../sf/taverna/biocatalogue/test/GSONTest.java | 19 -
.../test/GSONTest_exportingJSON.java | 30 -
.../test/GSONTest_forSoapOperationsIndex.java | 27 -
.../biocatalogue/test/JWaitDialogTest.java | 36 -
.../biocatalogue/test/LinkedListEqualsTest.java | 25 -
.../biocatalogue/test/TestAPICaller.java | 241 ---
.../test/TestDoubleUsageOfSameSwingElement.java | 32 -
.../biocatalogue/test/TestUtilURLHandling.java | 87 -
.../biocatalogue/test/TestXHTMLRenderer.java | 42 -
.../biocatalogue/test/WrappableJLabelTest.java | 35 -
.../taverna/biocatalogue/test/XStreamTest.java | 32 -
.../ui/BioCatalogueExplorationTab.java | 131 --
.../ui/HasDefaultFocusCapability.java | 15 -
.../biocatalogue/ui/JClickableLabel.java | 172 --
.../sf/taverna/biocatalogue/ui/JWaitDialog.java | 234 ---
.../biocatalogue/ui/SearchOptionsPanel.java | 167 --
.../ui/filtertree/FilterTreeNode.java | 91 -
.../ui/filtertree/FilterTreePane.java | 348 ----
.../biocatalogue/ui/filtertree/JFilterTree.java | 69 -
...xpandableOnDemandLoadedListCellRenderer.java | 220 ---
.../RESTMethodListCellRenderer.java | 248 ---
.../SOAPOperationListCellRenderer.java | 257 ---
.../SearchResultsListingPanel.java | 870 ---------
.../search_results/SearchResultsMainPanel.java | 498 -----
.../search_results/SearchResultsRenderer.java | 47 -
.../search_results/ServiceListCellRenderer.java | 291 ---
.../ui/tristatetree/JTriStateTree.java | 631 ------
.../tristatetree/Swing - Tristate CheckBox.7z | Bin 108419 -> 0 bytes
.../biocatalogue/ui/tristatetree/Test.java | 67 -
.../ui/tristatetree/TriStateCheckBox.java | 172 --
.../TriStateCheckBoxTreeCellRenderer.java | 62 -
.../TriStateTreeCheckingListener.java | 12 -
.../ui/tristatetree/TriStateTreeNode.java | 246 ---
.../biocatalogue/BioCataloguePerspective.java | 70 -
.../biocatalogue/MainComponent.java | 285 ---
.../biocatalogue/MainComponentFactory.java | 46 -
.../biocatalogue/MainComponentShutdownHook.java | 49 -
.../biocatalogue/TestJFrameForLocalLaunch.java | 68 -
.../biocatalogue/integration/Integration.java | 518 -----
.../config/BioCataloguePluginConfiguration.java | 68 -
.../BioCataloguePluginConfigurationPanel.java | 448 -----
...ioCataloguePluginConfigurationUIFactory.java | 27 -
...aloguePluginInputPortContextViewFactory.java | 45 -
...loguePluginOutputPortContextViewFactory.java | 45 -
...aloguePluginProcessorContextViewFactory.java | 43 -
.../ProcessorInputPortView.java | 52 -
.../ProcessorOutputPortView.java | 52 -
.../contextual_views/ProcessorView.java | 229 ---
.../BioCatalogueWSDLActivityHealthCheck.java | 40 -
...ueWSDLActivityHealthCheckVisitExplainer.java | 111 --
.../BioCatalogueWSDLActivityHealthChecker.java | 199 --
.../health_check/ServiceHealthChecker.java | 280 ---
.../ServiceMonitoringStatusInterpreter.java | 77 -
.../BioCatalogueContextualMenuSection.java | 62 -
.../integration/menus/MenuActionInputPort.java | 43 -
.../menus/MenuActionProcessorHealthCheck.java | 51 -
.../BioCatalogueRESTServiceProvider.java | 117 --
.../BioCatalogueServiceProvider.java | 274 ---
...ioCatalogueWSDLOperationServiceProvider.java | 215 ---
.../RESTFromBioCatalogueServiceDescription.java | 194 --
...ationFromBioCatalogueServiceDescription.java | 116 --
.../model/BioCataloguePluginConstants.java | 77 +
.../model/HTTPMethodInterpreter.java | 46 +
.../model/LoadingExpandedResource.java | 41 +
.../biocatalogue/model/LoadingResource.java | 39 +
.../apache/taverna/biocatalogue/model/Pair.java | 30 +
.../taverna/biocatalogue/model/Resource.java | 506 +++++
.../biocatalogue/model/ResourceManager.java | 326 ++++
.../model/ResourcePreviewContent.java | 38 +
.../model/SoapOperationIdentity.java | 77 +
.../model/SoapOperationPortIdentity.java | 26 +
.../model/SoapProcessorIdentity.java | 27 +
.../biocatalogue/model/SoapServiceIdentity.java | 45 +
.../apache/taverna/biocatalogue/model/Tag.java | 218 +++
.../apache/taverna/biocatalogue/model/Util.java | 793 ++++++++
.../BeanForPOSTToFilteredIndex.java | 12 +
.../model/connectivity/BeansForJSONLiteAPI.java | 84 +
.../connectivity/BioCatalogueAPIRequest.java | 47 +
.../model/connectivity/BioCatalogueClient.java | 785 ++++++++
.../model/connectivity/ServerResponse.java | 40 +
.../connectivity/ServerResponseStream.java | 30 +
.../biocatalogue/model/search/SearchEngine.java | 221 +++
.../model/search/SearchInstance.java | 490 +++++
.../model/search/SearchInstanceTracker.java | 57 +
.../model/search/SearchOptions.java | 70 +
.../model/search/SearchResults.java | 214 +++
.../model/search/ServiceFilteringSettings.java | 184 ++
.../biocatalogue/test/AnnotationBean.java | 52 +
.../biocatalogue/test/DrawDefaultIconTest.java | 38 +
.../taverna/biocatalogue/test/GSONTest.java | 19 +
.../test/GSONTest_exportingJSON.java | 30 +
.../test/GSONTest_forSoapOperationsIndex.java | 27 +
.../biocatalogue/test/JWaitDialogTest.java | 36 +
.../biocatalogue/test/LinkedListEqualsTest.java | 25 +
.../biocatalogue/test/TestAPICaller.java | 241 +++
.../test/TestDoubleUsageOfSameSwingElement.java | 32 +
.../biocatalogue/test/TestUtilURLHandling.java | 87 +
.../biocatalogue/test/TestXHTMLRenderer.java | 42 +
.../biocatalogue/test/WrappableJLabelTest.java | 35 +
.../taverna/biocatalogue/test/XStreamTest.java | 32 +
.../ui/BioCatalogueExplorationTab.java | 131 ++
.../ui/HasDefaultFocusCapability.java | 15 +
.../biocatalogue/ui/JClickableLabel.java | 172 ++
.../taverna/biocatalogue/ui/JWaitDialog.java | 234 +++
.../biocatalogue/ui/SearchOptionsPanel.java | 167 ++
.../ui/filtertree/FilterTreeNode.java | 91 +
.../ui/filtertree/FilterTreePane.java | 348 ++++
.../biocatalogue/ui/filtertree/JFilterTree.java | 69 +
...xpandableOnDemandLoadedListCellRenderer.java | 220 +++
.../RESTMethodListCellRenderer.java | 248 +++
.../SOAPOperationListCellRenderer.java | 257 +++
.../SearchResultsListingPanel.java | 870 +++++++++
.../search_results/SearchResultsMainPanel.java | 498 +++++
.../search_results/SearchResultsRenderer.java | 47 +
.../search_results/ServiceListCellRenderer.java | 291 +++
.../ui/tristatetree/JTriStateTree.java | 631 ++++++
.../tristatetree/Swing - Tristate CheckBox.7z | Bin 0 -> 108419 bytes
.../biocatalogue/ui/tristatetree/Test.java | 67 +
.../ui/tristatetree/TriStateCheckBox.java | 172 ++
.../TriStateCheckBoxTreeCellRenderer.java | 62 +
.../TriStateTreeCheckingListener.java | 12 +
.../ui/tristatetree/TriStateTreeNode.java | 246 +++
.../biocatalogue/BioCataloguePerspective.java | 70 +
.../biocatalogue/MainComponent.java | 285 +++
.../biocatalogue/MainComponentFactory.java | 46 +
.../biocatalogue/MainComponentShutdownHook.java | 49 +
.../biocatalogue/TestJFrameForLocalLaunch.java | 68 +
.../biocatalogue/integration/Integration.java | 518 +++++
.../config/BioCataloguePluginConfiguration.java | 68 +
.../BioCataloguePluginConfigurationPanel.java | 448 +++++
...ioCataloguePluginConfigurationUIFactory.java | 27 +
...aloguePluginInputPortContextViewFactory.java | 45 +
...loguePluginOutputPortContextViewFactory.java | 45 +
...aloguePluginProcessorContextViewFactory.java | 43 +
.../ProcessorInputPortView.java | 52 +
.../ProcessorOutputPortView.java | 52 +
.../contextual_views/ProcessorView.java | 229 +++
.../BioCatalogueWSDLActivityHealthCheck.java | 40 +
...ueWSDLActivityHealthCheckVisitExplainer.java | 111 ++
.../BioCatalogueWSDLActivityHealthChecker.java | 199 ++
.../health_check/ServiceHealthChecker.java | 280 +++
.../ServiceMonitoringStatusInterpreter.java | 77 +
.../BioCatalogueContextualMenuSection.java | 62 +
.../integration/menus/MenuActionInputPort.java | 43 +
.../menus/MenuActionProcessorHealthCheck.java | 51 +
.../BioCatalogueRESTServiceProvider.java | 117 ++
.../BioCatalogueServiceProvider.java | 274 +++
...ioCatalogueWSDLOperationServiceProvider.java | 215 +++
.../RESTFromBioCatalogueServiceDescription.java | 194 ++
...ationFromBioCatalogueServiceDescription.java | 116 ++
...rvicedescriptions.ServiceDescriptionProvider | 4 +-
.../net.sf.taverna.t2.ui.menu.MenuComponent | 4 +-
.../net.sf.taverna.t2.workbench.ShutdownSPI | 2 +-
...rkbench.configuration.ConfigurationUIFactory | 2 +-
...t2.workbench.report.explainer.VisitExplainer | 2 +-
...ntextualviews.activity.ContextualViewFactory | 6 +-
...taverna.t2.workbench.ui.zaria.PerspectiveSPI | 2 +-
....t2.workbench.ui.zaria.UIComponentFactorySPI | 2 +-
...taverna.t2.workbench.ui.zaria.UIComponentSPI | 2 +-
...averna.t2.workflowmodel.health.HealthChecker | 2 +-
.../perspectives/design/DesignPerspective.java | 118 --
.../design/DesignPerspectiveComponent.java | 115 --
.../design/WorkflowBundleSelectorComponent.java | 113 --
.../design/WorkflowSelectorComponent.java | 167 --
.../t2/ui/perspectives/design/WorkflowTab.java | 133 --
.../perspectives/design/DesignPerspective.java | 117 ++
.../design/DesignPerspectiveComponent.java | 114 ++
.../design/WorkflowBundleSelectorComponent.java | 112 ++
.../design/WorkflowSelectorComponent.java | 166 ++
.../ui/perspectives/design/WorkflowTab.java | 132 ++
...taverna.t2.workbench.ui.zaria.PerspectiveSPI | 1 -
...he.taverna.workbench.ui.zaria.PerspectiveSPI | 1 +
.../spring/perspective-design-context-osgi.xml | 18 +-
.../spring/perspective-design-context.xml | 2 +-
.../myexperiment/AddCommentDialog.java | 330 ----
.../myexperiment/AddRemoveFavouriteDialog.java | 277 ---
.../myexperiment/ExampleWorkflowsPanel.java | 153 --
.../HistoryBrowserTabContentPanel.java | 541 ------
.../myexperiment/JClickableLabel.java | 127 --
.../myexperiment/MainComponent.java | 645 -------
.../myexperiment/MainComponentFactory.java | 60 -
.../myexperiment/MainComponentShutdownHook.java | 84 -
.../myexperiment/MyExperimentPerspective.java | 190 --
.../myexperiment/MyStuffContributionsPanel.java | 370 ----
.../myexperiment/MyStuffSidebarPanel.java | 359 ----
.../myexperiment/MyStuffTabContentPanel.java | 342 ----
.../myexperiment/PluginPreferencesDialog.java | 372 ----
.../myexperiment/PluginStatusBar.java | 195 --
.../myexperiment/ResourceListPanel.java | 182 --
.../myexperiment/ResourcePreviewBrowser.java | 711 -------
.../myexperiment/ResourcePreviewContent.java | 78 -
.../myexperiment/ResourcePreviewFactory.java | 1359 -------------
.../myexperiment/SearchOptionsPanel.java | 317 ---
.../myexperiment/SearchResultsPanel.java | 201 --
.../myexperiment/SearchTabContentPanel.java | 450 -----
.../myexperiment/StyledHTMLEditorKit.java | 19 -
.../myexperiment/TagBrowserTabContentPanel.java | 226 ---
.../myexperiment/TagCloudPanel.java | 342 ----
.../myexperiment/TestJFrameForLocalLaunch.java | 48 -
.../myexperiment/UploadWorkflowDialog.java | 849 --------
.../myexperiment/model/Base64$InputStream.class | Bin 2083 -> 0 bytes
.../model/Base64$OutputStream.class | Bin 2307 -> 0 bytes
.../myexperiment/model/Base64.class | Bin 15458 -> 0 bytes
.../perspectives/myexperiment/model/Base64.java | 1813 ------------------
.../myexperiment/model/Comment.java | 141 --
.../perspectives/myexperiment/model/File.java | 237 ---
.../perspectives/myexperiment/model/Group.java | 222 ---
.../myexperiment/model/License.java | 62 -
.../myexperiment/model/MyExperimentClient.class | Bin 3174 -> 0 bytes
.../myexperiment/model/MyExperimentClient.java | 1218 ------------
.../perspectives/myexperiment/model/Pack.java | 232 ---
.../myexperiment/model/PackItem.java | 186 --
.../myexperiment/model/Resource.java | 683 -------
.../myexperiment/model/SearchEngine.java | 321 ----
.../myexperiment/model/ServerResponse.java | 59 -
.../ui/perspectives/myexperiment/model/Tag.java | 125 --
.../myexperiment/model/TagCloud.java | 47 -
.../perspectives/myexperiment/model/User.java | 297 ---
.../perspectives/myexperiment/model/Util.java | 624 ------
.../myexperiment/model/Workflow.java | 420 ----
.../config/MyExperimentConfiguration.java | 68 -
.../config/MyExperimentConfigurationPanel.java | 305 ---
.../MyExperimentConfigurationUIFactory.java | 62 -
.../TestJFrameForPreferencesLocalLaunch.java | 46 -
.../myexperiment/AddCommentDialog.java | 330 ++++
.../myexperiment/AddRemoveFavouriteDialog.java | 277 +++
.../myexperiment/ExampleWorkflowsPanel.java | 153 ++
.../HistoryBrowserTabContentPanel.java | 541 ++++++
.../myexperiment/JClickableLabel.java | 127 ++
.../myexperiment/MainComponent.java | 645 +++++++
.../myexperiment/MainComponentFactory.java | 60 +
.../myexperiment/MainComponentShutdownHook.java | 84 +
.../myexperiment/MyExperimentPerspective.java | 190 ++
.../myexperiment/MyStuffContributionsPanel.java | 370 ++++
.../myexperiment/MyStuffSidebarPanel.java | 359 ++++
.../myexperiment/MyStuffTabContentPanel.java | 342 ++++
.../myexperiment/PluginPreferencesDialog.java | 372 ++++
.../myexperiment/PluginStatusBar.java | 195 ++
.../myexperiment/ResourceListPanel.java | 182 ++
.../myexperiment/ResourcePreviewBrowser.java | 711 +++++++
.../myexperiment/ResourcePreviewContent.java | 78 +
.../myexperiment/ResourcePreviewFactory.java | 1359 +++++++++++++
.../myexperiment/SearchOptionsPanel.java | 317 +++
.../myexperiment/SearchResultsPanel.java | 201 ++
.../myexperiment/SearchTabContentPanel.java | 450 +++++
.../myexperiment/StyledHTMLEditorKit.java | 19 +
.../myexperiment/TagBrowserTabContentPanel.java | 226 +++
.../myexperiment/TagCloudPanel.java | 342 ++++
.../myexperiment/TestJFrameForLocalLaunch.java | 48 +
.../myexperiment/UploadWorkflowDialog.java | 849 ++++++++
.../myexperiment/model/Base64$InputStream.class | Bin 0 -> 2083 bytes
.../model/Base64$OutputStream.class | Bin 0 -> 2307 bytes
.../myexperiment/model/Base64.class | Bin 0 -> 15458 bytes
.../perspectives/myexperiment/model/Base64.java | 1813 ++++++++++++++++++
.../myexperiment/model/Comment.java | 141 ++
.../perspectives/myexperiment/model/File.java | 237 +++
.../perspectives/myexperiment/model/Group.java | 222 +++
.../myexperiment/model/License.java | 62 +
.../myexperiment/model/MyExperimentClient.class | Bin 0 -> 3174 bytes
.../myexperiment/model/MyExperimentClient.java | 1218 ++++++++++++
.../perspectives/myexperiment/model/Pack.java | 232 +++
.../myexperiment/model/PackItem.java | 186 ++
.../myexperiment/model/Resource.java | 683 +++++++
.../myexperiment/model/SearchEngine.java | 321 ++++
.../myexperiment/model/ServerResponse.java | 59 +
.../ui/perspectives/myexperiment/model/Tag.java | 125 ++
.../myexperiment/model/TagCloud.java | 47 +
.../perspectives/myexperiment/model/User.java | 297 +++
.../perspectives/myexperiment/model/Util.java | 624 ++++++
.../myexperiment/model/Workflow.java | 420 ++++
.../config/MyExperimentConfiguration.java | 68 +
.../config/MyExperimentConfigurationPanel.java | 305 +++
.../MyExperimentConfigurationUIFactory.java | 62 +
.../TestJFrameForPreferencesLocalLaunch.java | 46 +
.../net.sf.taverna.t2.workbench.ShutdownSPI | 1 -
...rkbench.configuration.ConfigurationUIFactory | 1 -
...taverna.t2.workbench.ui.zaria.PerspectiveSPI | 1 -
....t2.workbench.ui.zaria.UIComponentFactorySPI | 1 -
...taverna.t2.workbench.ui.zaria.UIComponentSPI | 1 -
.../org.apache.taverna.workbench.ShutdownSPI | 1 +
...rkbench.configuration.ConfigurationUIFactory | 1 +
...he.taverna.workbench.ui.zaria.PerspectiveSPI | 1 +
...rna.workbench.ui.zaria.UIComponentFactorySPI | 1 +
...he.taverna.workbench.ui.zaria.UIComponentSPI | 1 +
.../perspective-myexperiment-context-osgi.xml | 10 +-
.../spring/perspective-myexperiment-context.xml | 8 +-
.../myexperiment/ajax-loader-still.gif | Bin 889 -> 0 bytes
.../perspectives/myexperiment/ajax-loader.gif | Bin 1456 -> 0 bytes
.../ui/perspectives/myexperiment/arrow_left.png | Bin 557 -> 0 bytes
.../perspectives/myexperiment/arrow_refresh.png | Bin 685 -> 0 bytes
.../perspectives/myexperiment/arrow_right.png | Bin 596 -> 0 bytes
.../perspectives/myexperiment/comment_add.png | Bin 530 -> 0 bytes
.../myexperiment/comment_delete.png | Bin 548 -> 0 bytes
.../t2/ui/perspectives/myexperiment/cross.png | Bin 655 -> 0 bytes
.../t2/ui/perspectives/myexperiment/denied.png | Bin 701 -> 0 bytes
.../myexperiment/dummy-workflow.t2flow | 157 --
.../external_link_listing_small.png | Bin 456 -> 0 bytes
.../perspectives/myexperiment/favourite_add.png | Bin 701 -> 0 bytes
.../myexperiment/favourite_delete.png | Bin 722 -> 0 bytes
.../t2/ui/perspectives/myexperiment/file.png | Bin 562 -> 0 bytes
.../t2/ui/perspectives/myexperiment/group.png | Bin 753 -> 0 bytes
.../t2/ui/perspectives/myexperiment/login.png | Bin 693 -> 0 bytes
.../t2/ui/perspectives/myexperiment/logout.png | Bin 688 -> 0 bytes
.../ui/perspectives/myexperiment/myexp_icon.png | Bin 1611 -> 0 bytes
.../myexperiment/myexp_icon16x16.png | Bin 1057 -> 0 bytes
.../myexperiment/myexperiment-perspective.xml | 17 -
.../myexperiment/open_in_myExperiment.png | Bin 621 -> 0 bytes
.../t2/ui/perspectives/myexperiment/pack.png | Bin 565 -> 0 bytes
.../myexperiment/remote_resource.png | Bin 957 -> 0 bytes
.../t2/ui/perspectives/myexperiment/star.png | Bin 670 -> 0 bytes
.../t2/ui/perspectives/myexperiment/styles.css | 380 ----
.../ui/perspectives/myexperiment/tag_blue.png | Bin 586 -> 0 bytes
.../t2/ui/perspectives/myexperiment/tick.png | Bin 537 -> 0 bytes
.../myexperiment/transparent_icon.png | Bin 1172 -> 0 bytes
.../t2/ui/perspectives/myexperiment/user.png | Bin 741 -> 0 bytes
.../ui/perspectives/myexperiment/workflow.png | Bin 975 -> 0 bytes
.../myexperiment/ajax-loader-still.gif | Bin 0 -> 889 bytes
.../perspectives/myexperiment/ajax-loader.gif | Bin 0 -> 1456 bytes
.../ui/perspectives/myexperiment/arrow_left.png | Bin 0 -> 557 bytes
.../perspectives/myexperiment/arrow_refresh.png | Bin 0 -> 685 bytes
.../perspectives/myexperiment/arrow_right.png | Bin 0 -> 596 bytes
.../perspectives/myexperiment/comment_add.png | Bin 0 -> 530 bytes
.../myexperiment/comment_delete.png | Bin 0 -> 548 bytes
.../ui/perspectives/myexperiment/cross.png | Bin 0 -> 655 bytes
.../ui/perspectives/myexperiment/denied.png | Bin 0 -> 701 bytes
.../myexperiment/dummy-workflow.t2flow | 157 ++
.../external_link_listing_small.png | Bin 0 -> 456 bytes
.../perspectives/myexperiment/favourite_add.png | Bin 0 -> 701 bytes
.../myexperiment/favourite_delete.png | Bin 0 -> 722 bytes
.../ui/perspectives/myexperiment/file.png | Bin 0 -> 562 bytes
.../ui/perspectives/myexperiment/group.png | Bin 0 -> 753 bytes
.../ui/perspectives/myexperiment/login.png | Bin 0 -> 693 bytes
.../ui/perspectives/myexperiment/logout.png | Bin 0 -> 688 bytes
.../ui/perspectives/myexperiment/myexp_icon.png | Bin 0 -> 1611 bytes
.../myexperiment/myexp_icon16x16.png | Bin 0 -> 1057 bytes
.../myexperiment/myexperiment-perspective.xml | 17 +
.../myexperiment/open_in_myExperiment.png | Bin 0 -> 621 bytes
.../ui/perspectives/myexperiment/pack.png | Bin 0 -> 565 bytes
.../myexperiment/remote_resource.png | Bin 0 -> 957 bytes
.../ui/perspectives/myexperiment/star.png | Bin 0 -> 670 bytes
.../ui/perspectives/myexperiment/styles.css | 380 ++++
.../ui/perspectives/myexperiment/tag_blue.png | Bin 0 -> 586 bytes
.../ui/perspectives/myexperiment/tick.png | Bin 0 -> 537 bytes
.../myexperiment/transparent_icon.png | Bin 0 -> 1172 bytes
.../ui/perspectives/myexperiment/user.png | Bin 0 -> 741 bytes
.../ui/perspectives/myexperiment/workflow.png | Bin 0 -> 975 bytes
.../results/ResultsPerspective.java | 158 --
.../results/ResultsPerspectiveComponent.java | 221 ---
.../t2/ui/perspectives/results/RunMonitor.java | 171 --
.../results/RunSelectorComponent.java | 72 -
.../t2/ui/perspectives/results/RunTab.java | 133 --
.../t2/ui/perspectives/results/WorkflowRun.java | 54 -
.../results/WorkflowRunListCellRenderer.java | 59 -
.../results/WorkflowRunListModel.java | 66 -
.../results/ResultsPerspective.java | 158 ++
.../results/ResultsPerspectiveComponent.java | 221 +++
.../ui/perspectives/results/RunMonitor.java | 171 ++
.../results/RunSelectorComponent.java | 72 +
.../taverna/ui/perspectives/results/RunTab.java | 133 ++
.../ui/perspectives/results/WorkflowRun.java | 54 +
.../results/WorkflowRunListCellRenderer.java | 59 +
.../results/WorkflowRunListModel.java | 66 +
...taverna.t2.workbench.ui.zaria.PerspectiveSPI | 1 -
...he.taverna.workbench.ui.zaria.PerspectiveSPI | 1 +
.../spring/perspective-results-context-osgi.xml | 14 +-
.../spring/perspective-results-context.xml | 2 +-
.../plugin/impl/AvailablePluginPanel.java | 72 -
.../plugin/impl/InstalledPluginPanel.java | 66 -
.../plugin/impl/PluginManagerPanel.java | 210 --
.../plugin/impl/PluginManagerView.java | 71 -
.../t2/workbench/plugin/impl/PluginPanel.java | 166 --
.../plugin/impl/UpdatePluginPanel.java | 72 -
.../plugin/impl/menu/PluginMenuAction.java | 56 -
.../plugin/impl/AvailablePluginPanel.java | 71 +
.../plugin/impl/InstalledPluginPanel.java | 65 +
.../plugin/impl/PluginManagerPanel.java | 209 ++
.../plugin/impl/PluginManagerView.java | 70 +
.../workbench/plugin/impl/PluginPanel.java | 165 ++
.../plugin/impl/UpdatePluginPanel.java | 71 +
.../plugin/impl/menu/PluginMenuAction.java | 55 +
.../spring/plugin-manager-context-osgi.xml | 4 +-
.../META-INF/spring/plugin-manager-context.xml | 4 +-
.../raven/plugins/ui/AddPluginSiteFrame.java | 273 ---
.../plugins/ui/CheckForNoticeStartupHook.java | 143 --
.../raven/plugins/ui/CheckForUpdatesDialog.java | 122 --
.../plugins/ui/CheckForUpdatesStartupHook.java | 94 -
.../plugins/ui/PluginListCellRenderer.java | 214 ---
.../raven/plugins/ui/PluginListModel.java | 108 --
.../raven/plugins/ui/PluginManagerFrame.java | 516 -----
.../plugins/ui/PluginRepositoryListener.java | 148 --
.../raven/plugins/ui/PluginSiteFrame.java | 542 ------
.../raven/plugins/ui/UpdatesAvailableIcon.java | 205 --
.../profile/ui/ProfileVersionCellRenderer.java | 177 --
.../profile/ui/ProfileVersionListFrame.java | 260 ---
.../profile/ui/ProfileVersionListModel.java | 101 -
.../raven/plugins/ui/AddPluginSiteFrame.java | 273 +++
.../plugins/ui/CheckForNoticeStartupHook.java | 143 ++
.../raven/plugins/ui/CheckForUpdatesDialog.java | 122 ++
.../plugins/ui/CheckForUpdatesStartupHook.java | 94 +
.../plugins/ui/PluginListCellRenderer.java | 214 +++
.../raven/plugins/ui/PluginListModel.java | 108 ++
.../raven/plugins/ui/PluginManagerFrame.java | 516 +++++
.../plugins/ui/PluginRepositoryListener.java | 148 ++
.../raven/plugins/ui/PluginSiteFrame.java | 542 ++++++
.../raven/plugins/ui/UpdatesAvailableIcon.java | 205 ++
.../profile/ui/ProfileVersionCellRenderer.java | 177 ++
.../profile/ui/ProfileVersionListFrame.java | 260 +++
.../profile/ui/ProfileVersionListModel.java | 101 +
.../net.sf.taverna.t2.workbench.StartupSPI | 2 -
.../org.apache.taverna.workbench.StartupSPI | 2 +
.../spring/plugins-gui-context-osgi.xml | 2 +-
.../net/sf/taverna/raven/plugins/ui/update.png | Bin 689 -> 0 bytes
.../raven/plugins/ui/updateRecommended.png | Bin 731 -> 0 bytes
.../apache/taverna/raven/plugins/ui/update.png | Bin 0 -> 689 bytes
.../raven/plugins/ui/updateRecommended.png | Bin 0 -> 731 bytes
taverna-reference-ui/pom.xml | 12 +-
.../t2/reference/ui/CheckWorkflowStatus.java | 97 -
.../ui/CopyWorkflowInProgressDialog.java | 91 -
.../reference/ui/CopyWorkflowSwingWorker.java | 51 -
.../t2/reference/ui/InvalidDataflowReport.java | 95 -
.../t2/reference/ui/RegistrationPanel.java | 808 --------
.../sf/taverna/t2/reference/ui/UrlPanel.java | 100 -
.../t2/reference/ui/WorkflowLaunchWindow.java | 626 ------
.../net/sf/taverna/t2/reference/ui/package.html | 4 -
.../ui/referenceactions/LoadInputsFromXML.java | 118 --
.../ui/referenceactions/ReferenceActionSPI.java | 38 -
.../ui/referenceactions/SaveInputsAsXML.java | 205 --
.../reference/ui/tree/PreRegistrationTree.java | 217 ---
.../tree/PreRegistrationTreeCellRenderer.java | 115 --
.../ui/tree/PreRegistrationTreeDnDHandler.java | 268 ---
.../ui/tree/PreRegistrationTreeModel.java | 310 ---
.../taverna/t2/reference/ui/tree/package.html | 6 -
.../reference/ui/CheckWorkflowStatus.java | 97 +
.../ui/CopyWorkflowInProgressDialog.java | 91 +
.../reference/ui/CopyWorkflowSwingWorker.java | 51 +
.../reference/ui/InvalidDataflowReport.java | 95 +
.../taverna/reference/ui/RegistrationPanel.java | 808 ++++++++
.../apache/taverna/reference/ui/UrlPanel.java | 100 +
.../reference/ui/WorkflowLaunchWindow.java | 626 ++++++
.../apache/taverna/reference/ui/package.html | 4 +
.../ui/referenceactions/LoadInputsFromXML.java | 118 ++
.../ui/referenceactions/ReferenceActionSPI.java | 38 +
.../ui/referenceactions/SaveInputsAsXML.java | 205 ++
.../reference/ui/tree/PreRegistrationTree.java | 217 +++
.../tree/PreRegistrationTreeCellRenderer.java | 115 ++
.../ui/tree/PreRegistrationTreeDnDHandler.java | 268 +++
.../ui/tree/PreRegistrationTreeModel.java | 310 +++
.../taverna/reference/ui/tree/package.html | 6 +
...rence.ui.referenceactions.ReferenceActionSPI | 2 -
...rence.ui.referenceactions.ReferenceActionSPI | 2 +
.../spring/reference-ui-context-osgi.xml | 4 +-
.../META-INF/spring/reference-ui-context.xml | 4 +-
.../net/sf/taverna/t2/renderers/Renderer.java | 33 -
.../taverna/t2/renderers/RendererException.java | 46 -
.../taverna/t2/renderers/RendererRegistry.java | 48 -
.../sf/taverna/t2/renderers/RendererUtils.java | 89 -
.../org/apache/taverna/renderers/Renderer.java | 32 +
.../taverna/renderers/RendererException.java | 45 +
.../taverna/renderers/RendererRegistry.java | 47 +
.../apache/taverna/renderers/RendererUtils.java | 88 +
.../t2/renderers/HTMLBrowserRenderer.java | 95 -
.../sf/taverna/t2/renderers/JMolRenderer.java | 178 --
.../sf/taverna/t2/renderers/PDFRenderer.java | 124 --
.../sf/taverna/t2/renderers/SVGRenderer.java | 154 --
.../taverna/t2/renderers/SeqVistaRenderer.java | 167 --
.../taverna/renderers/HTMLBrowserRenderer.java | 97 +
.../apache/taverna/renderers/JMolRenderer.java | 181 ++
.../apache/taverna/renderers/PDFRenderer.java | 127 ++
.../apache/taverna/renderers/SVGRenderer.java | 157 ++
.../taverna/renderers/SeqVistaRenderer.java | 170 ++
.../net.sf.taverna.t2.renderers.Renderer | 5 -
.../org.apache.taverna.renderers.Renderer | 5 +
.../spring/renderers-exts-context-osgi.xml | 10 +-
.../META-INF/spring/renderers-exts-context.xml | 10 +-
.../taverna/t2/renderers/TestRendererSPI.java | 153 --
.../taverna/renderers/TestRendererSPI.java | 153 ++
taverna-renderers-impl/pom.xml | 2 +-
.../t2/renderers/impl/AbstractRenderer.java | 124 --
.../renderers/impl/AdvancedImageRenderer.java | 94 -
.../t2/renderers/impl/ExtensionFileFilter.java | 77 -
.../t2/renderers/impl/HexBinaryRenderer.java | 77 -
.../t2/renderers/impl/RendererConstants.java | 13 -
.../t2/renderers/impl/RendererRegistryImpl.java | 54 -
.../taverna/t2/renderers/impl/TextRenderer.java | 137 --
.../t2/renderers/impl/TextRtfRenderer.java | 85 -
.../t2/renderers/impl/TextXMLRenderer.java | 86 -
.../sf/taverna/t2/renderers/impl/XMLTree.java | 329 ----
.../renderers/impl/AbstractRenderer.java | 143 ++
.../renderers/impl/AdvancedImageRenderer.java | 93 +
.../renderers/impl/ExtensionFileFilter.java | 71 +
.../renderers/impl/HexBinaryRenderer.java | 76 +
.../renderers/impl/RendererConstants.java | 32 +
.../renderers/impl/RendererRegistryImpl.java | 53 +
.../taverna/renderers/impl/TextRenderer.java | 136 ++
.../taverna/renderers/impl/TextRtfRenderer.java | 84 +
.../taverna/renderers/impl/TextXMLRenderer.java | 85 +
.../apache/taverna/renderers/impl/XMLTree.java | 328 ++++
.../net.sf.taverna.t2.renderers.Renderer | 7 -
.../org.apache.taverna.renderers.Renderer | 7 +
.../spring/renderers-impl-context-osgi.xml | 14 +-
.../META-INF/spring/renderers-impl-context.xml | 12 +-
.../taverna/t2/renderers/TestRendererSPI.java | 154 --
.../taverna/renderers/TestRendererSPI.java | 153 ++
.../t2/workbench/report/ProfileReportEvent.java | 21 -
.../t2/workbench/report/ReportManager.java | 42 -
.../t2/workbench/report/ReportManagerEvent.java | 10 -
.../config/ReportManagerConfiguration.java | 44 -
.../workbench/report/ProfileReportEvent.java | 37 +
.../taverna/workbench/report/ReportManager.java | 61 +
.../workbench/report/ReportManagerEvent.java | 26 +
.../config/ReportManagerConfiguration.java | 43 +
.../services/net.sf.taverna.t2.visit.VisitKind | 1 -
....taverna.t2.visit.fragility.FragilityChecker | 1 -
.../services/org.apache.taverna.visit.VisitKind | 1 +
...che.taverna.visit.fragility.FragilityChecker | 1 +
.../META-INF/spring/report-api-context-osgi.xml | 4 +-
.../META-INF/spring/report-api-context.xml | 4 +-
.../report/explainer/BasicExplainer.java | 1294 -------------
.../report/explainer/BasicExplainer.java | 1294 +++++++++++++
...t2.workbench.report.explainer.VisitExplainer | 1 -
...na.workbench.report.explainer.VisitExplainer | 1 +
.../spring/report-explainer-context-osgi.xml | 12 +-
.../spring/report-explainer-context.xml | 2 +-
.../impl/ReportManagerConfigurationImpl.java | 71 -
.../report/impl/ReportManagerImpl.java | 564 ------
.../impl/ReportManagerConfigurationImpl.java | 71 +
.../report/impl/ReportManagerImpl.java | 564 ++++++
.../spring/report-impl-context-osgi.xml | 14 +-
.../META-INF/spring/report-impl-context.xml | 8 +-
.../ui/ReportManagerConfigurationPanel.java | 363 ----
.../ui/ReportManagerConfigurationUIFactory.java | 55 -
.../ReportOnObjectContextualMenuAction.java | 189 --
.../report/view/ReportOnWorkflowAction.java | 177 --
.../report/view/ReportViewComponent.java | 574 ------
.../report/view/ReportViewComponentFactory.java | 75 -
.../report/view/ReportViewConfigureAction.java | 45 -
.../report/view/ReportViewTableModel.java | 284 ---
.../workbench/report/view/StatusRenderer.java | 46 -
.../report/view/ValidateInProgressDialog.java | 92 -
.../view/ValidateObjectInProgressDialog.java | 93 -
.../report/view/ValidateObjectSwingWorker.java | 71 -
.../report/view/ValidateSwingWorker.java | 123 --
.../workbench/report/view/VisitReportProxy.java | 42 -
.../report/view/VisitReportProxySet.java | 34 -
.../ui/ReportManagerConfigurationPanel.java | 363 ++++
.../ui/ReportManagerConfigurationUIFactory.java | 55 +
.../ReportOnObjectContextualMenuAction.java | 189 ++
.../report/view/ReportOnWorkflowAction.java | 178 ++
.../report/view/ReportViewComponent.java | 574 ++++++
.../report/view/ReportViewComponentFactory.java | 75 +
.../report/view/ReportViewConfigureAction.java | 45 +
.../report/view/ReportViewTableModel.java | 284 +++
.../workbench/report/view/StatusRenderer.java | 46 +
.../report/view/ValidateInProgressDialog.java | 92 +
.../view/ValidateObjectInProgressDialog.java | 93 +
.../report/view/ValidateObjectSwingWorker.java | 71 +
.../report/view/ValidateSwingWorker.java | 123 ++
.../workbench/report/view/VisitReportProxy.java | 42 +
.../report/view/VisitReportProxySet.java | 34 +
.../net.sf.taverna.t2.ui.menu.MenuComponent | 1 -
...rkbench.configuration.ConfigurationUIFactory | 1 -
....t2.workbench.ui.zaria.UIComponentFactorySPI | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 1 +
...rkbench.configuration.ConfigurationUIFactory | 1 +
...rna.workbench.ui.zaria.UIComponentFactorySPI | 1 +
.../spring/report-view-context-osgi.xml | 18 +-
.../META-INF/spring/report-view-context.xml | 6 +-
taverna-results-view/pom.xml | 6 +-
.../views/results/InvocationTreeModel.java | 103 -
.../views/results/InvocationTreeNode.java | 100 -
.../workbench/views/results/InvocationView.java | 136 --
.../t2/workbench/views/results/ReportView.java | 420 ----
.../views/results/ResultsComponent.java | 233 ---
.../views/results/SimpleFilteredTreeModel.java | 68 -
.../processor/FilteredIterationTreeModel.java | 91 -
.../FilteredProcessorValueTreeModel.java | 70 -
.../IntermediateValuesInProgressDialog.java | 89 -
.../IntermediateValuesSwingWorker.java | 47 -
.../results/processor/IterationTreeNode.java | 99 -
.../processor/ProcessorEnactmentsTreeModel.java | 189 --
.../processor/ProcessorEnactmentsTreeNode.java | 84 -
.../processor/ProcessorPortResultsViewTab.java | 229 ---
.../processor/ProcessorResultCellRenderer.java | 89 -
.../processor/ProcessorResultTreeNode.java | 181 --
.../processor/ProcessorResultsComponent.java | 1004 ----------
.../processor/ProcessorResultsTreeModel.java | 73 -
.../RenderedProcessorResultComponent.java | 575 ------
.../saveactions/SaveAllResultsAsExcel.java | 293 ---
.../saveactions/SaveAllResultsAsXML.java | 80 -
.../results/saveactions/SaveAllResultsSPI.java | 193 --
.../saveactions/SaveAllResultsToFileSystem.java | 94 -
.../saveactions/SaveIndividualResult.java | 186 --
.../saveactions/SaveIndividualResultSPI.java | 48 -
.../results/workflow/DataBundleTreeModel.java | 136 --
.../workflow/FilteredDataBundleTreeModel.java | 147 --
.../FilteredWorkflowResultTreeModel.java | 126 --
.../workflow/PortResultCellRenderer.java | 100 -
.../results/workflow/PortResultsViewTab.java | 283 ---
.../workflow/RenderedResultComponent.java | 601 ------
.../workflow/WorkflowResultTreeModel.java | 197 --
.../workflow/WorkflowResultTreeNode.java | 120 --
.../workflow/WorkflowResultsComponent.java | 352 ----
.../views/results/InvocationTreeModel.java | 103 +
.../views/results/InvocationTreeNode.java | 100 +
.../workbench/views/results/InvocationView.java | 136 ++
.../workbench/views/results/ReportView.java | 420 ++++
.../views/results/ResultsComponent.java | 233 +++
.../views/results/SimpleFilteredTreeModel.java | 68 +
.../processor/FilteredIterationTreeModel.java | 91 +
.../FilteredProcessorValueTreeModel.java | 70 +
.../IntermediateValuesInProgressDialog.java | 89 +
.../IntermediateValuesSwingWorker.java | 47 +
.../results/processor/IterationTreeNode.java | 99 +
.../processor/ProcessorEnactmentsTreeModel.java | 189 ++
.../processor/ProcessorEnactmentsTreeNode.java | 84 +
.../processor/ProcessorPortResultsViewTab.java | 229 +++
.../processor/ProcessorResultCellRenderer.java | 89 +
.../processor/ProcessorResultTreeNode.java | 181 ++
.../processor/ProcessorResultsComponent.java | 1004 ++++++++++
.../processor/ProcessorResultsTreeModel.java | 73 +
.../RenderedProcessorResultComponent.java | 575 ++++++
.../saveactions/SaveAllResultsAsExcel.java | 293 +++
.../saveactions/SaveAllResultsAsXML.java | 80 +
.../results/saveactions/SaveAllResultsSPI.java | 193 ++
.../saveactions/SaveAllResultsToFileSystem.java | 94 +
.../saveactions/SaveIndividualResult.java | 186 ++
.../saveactions/SaveIndividualResultSPI.java | 48 +
.../results/workflow/DataBundleTreeModel.java | 136 ++
.../workflow/FilteredDataBundleTreeModel.java | 147 ++
.../FilteredWorkflowResultTreeModel.java | 126 ++
.../workflow/PortResultCellRenderer.java | 100 +
.../results/workflow/PortResultsViewTab.java | 283 +++
.../workflow/RenderedResultComponent.java | 601 ++++++
.../workflow/WorkflowResultTreeModel.java | 197 ++
.../workflow/WorkflowResultTreeNode.java | 120 ++
.../workflow/WorkflowResultsComponent.java | 352 ++++
...taverna.t2.workbench.ui.zaria.UIComponentSPI | 1 -
....views.results.saveactions.SaveAllResultsSPI | 3 -
....results.saveactions.SaveIndividualResultSPI | 1 -
...he.taverna.workbench.ui.zaria.UIComponentSPI | 1 +
....views.results.saveactions.SaveAllResultsSPI | 3 +
....results.saveactions.SaveIndividualResultSPI | 1 +
.../spring/results-view-context-osgi.xml | 8 +-
.../META-INF/spring/results-view-context.xml | 8 +-
.../retry/RetryConfigurationPanel.java | 172 --
.../workbench/retry/RetryConfigureAction.java | 183 --
.../retry/RetryConfigureMenuAction.java | 77 -
.../t2/workbench/retry/RetryContextualView.java | 165 --
.../retry/RetryContextualViewFactory.java | 58 -
.../retry/RetryConfigurationPanel.java | 191 ++
.../workbench/retry/RetryConfigureAction.java | 199 ++
.../retry/RetryConfigureMenuAction.java | 76 +
.../workbench/retry/RetryContextualView.java | 164 ++
.../retry/RetryContextualViewFactory.java | 57 +
.../net.sf.taverna.t2.ui.menu.MenuComponent | 1 -
...ntextualviews.activity.ContextualViewFactory | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 1 +
...ntextualviews.activity.ContextualViewFactory | 1 +
.../META-INF/spring/retry-ui-context-osgi.xml | 6 +-
.../META-INF/spring/retry-ui-context.xml | 4 +-
.../run/actions/OpenWorkflowRunAction.java | 135 --
.../run/actions/RunWorkflowAction.java | 299 ---
.../run/actions/ValidateWorkflowAction.java | 56 -
.../WorkflowRunStatusShutdownDialog.java | 153 --
.../cleanup/WorkflowRunStatusShutdownHook.java | 110 --
.../run/menu/FileOpenRunMenuAction.java | 63 -
.../workbench/run/menu/FileRunMenuAction.java | 82 -
.../workbench/run/menu/FileRunMenuSection.java | 36 -
.../run/menu/FileValidateMenuAction.java | 70 -
.../workbench/run/toolbar/RunToolbarAction.java | 82 -
.../run/toolbar/RunToolbarSection.java | 36 -
.../run/actions/OpenWorkflowRunAction.java | 135 ++
.../run/actions/RunWorkflowAction.java | 299 +++
.../run/actions/ValidateWorkflowAction.java | 56 +
.../WorkflowRunStatusShutdownDialog.java | 153 ++
.../cleanup/WorkflowRunStatusShutdownHook.java | 110 ++
.../run/menu/FileOpenRunMenuAction.java | 63 +
.../workbench/run/menu/FileRunMenuAction.java | 82 +
.../workbench/run/menu/FileRunMenuSection.java | 36 +
.../run/menu/FileValidateMenuAction.java | 70 +
.../workbench/run/toolbar/RunToolbarAction.java | 82 +
.../run/toolbar/RunToolbarSection.java | 36 +
.../net.sf.taverna.t2.ui.menu.MenuComponent | 6 -
.../net.sf.taverna.t2.workbench.ShutdownSPI | 5 -
.../net.sf.taverna.t2.workbench.StartupSPI | 1 -
....t2.workbench.ui.zaria.UIComponentFactorySPI | 1 -
...taverna.t2.workbench.ui.zaria.UIComponentSPI | 1 -
.../org.apache.taverna.ui.menu.MenuComponent | 6 +
.../org.apache.taverna.workbench.ShutdownSPI | 5 +
.../org.apache.taverna.workbench.StartupSPI | 1 +
...rna.workbench.ui.zaria.UIComponentFactorySPI | 1 +
...he.taverna.workbench.ui.zaria.UIComponentSPI | 1 +
.../META-INF/spring/run-ui-context-osgi.xml | 14 +-
.../META-INF/spring/run-ui-context.xml | 14 +-
.../selection/DataflowSelectionModel.java | 85 -
.../workbench/selection/SelectionManager.java | 112 --
.../events/DataflowSelectionMessage.java | 66 -
.../events/PerspectiveSelectionEvent.java | 59 -
.../selection/events/ProfileSelectionEvent.java | 57 -
.../selection/events/SelectionManagerEvent.java | 34 -
.../events/WorkflowBundleSelectionEvent.java | 59 -
.../events/WorkflowRunSelectionEvent.java | 51 -
.../events/WorkflowSelectionEvent.java | 57 -
.../selection/DataflowSelectionModel.java | 84 +
.../workbench/selection/SelectionManager.java | 131 ++
.../events/DataflowSelectionMessage.java | 65 +
.../events/PerspectiveSelectionEvent.java | 58 +
.../selection/events/ProfileSelectionEvent.java | 56 +
.../selection/events/SelectionManagerEvent.java | 33 +
.../events/WorkflowBundleSelectionEvent.java | 58 +
.../events/WorkflowRunSelectionEvent.java | 50 +
.../events/WorkflowSelectionEvent.java | 56 +
.../impl/DataflowSelectionModelImpl.java | 116 --
.../selection/impl/SelectionManagerImpl.java | 367 ----
.../impl/DataflowSelectionModelImpl.java | 115 ++
.../selection/impl/SelectionManagerImpl.java | 366 ++++
.../spring/selection-impl-context-osgi.xml | 10 +-
.../META-INF/spring/selection-impl-context.xml | 2 +-
...ringConstantActivityConfigurationAction.java | 71 -
.../menu/AddStringConstantTemplateAction.java | 112 --
.../AddStringConstantTemplateMenuAction.java | 124 --
.../menu/ConfigureStringConstantMenuAction.java | 64 -
.../StringConstantActivityIcon.java | 58 -
.../StringConstantTemplateService.java | 84 -
.../StringConstantActivityContextualView.java | 93 -
.../StringConstantActivityViewFactory.java | 87 -
.../views/StringConstantConfigView.java | 243 ---
...ringConstantActivityConfigurationAction.java | 70 +
.../menu/AddStringConstantTemplateAction.java | 111 ++
.../AddStringConstantTemplateMenuAction.java | 123 ++
.../menu/ConfigureStringConstantMenuAction.java | 83 +
.../StringConstantActivityIcon.java | 57 +
.../StringConstantTemplateService.java | 83 +
.../StringConstantActivityContextualView.java | 92 +
.../StringConstantActivityViewFactory.java | 86 +
.../views/StringConstantConfigView.java | 259 +++
...rvicedescriptions.ServiceDescriptionProvider | 1 -
.../net.sf.taverna.t2.ui.menu.MenuComponent | 3 -
...a.t2.workbench.activityicons.ActivityIconSPI | 1 -
...ntextualviews.activity.ContextualViewFactory | 1 -
...rvicedescriptions.ServiceDescriptionProvider | 1 +
.../org.apache.taverna.ui.menu.MenuComponent | 3 +
...erna.workbench.activityicons.ActivityIconSPI | 1 +
...ntextualviews.activity.ContextualViewFactory | 1 +
.../stringconstant-activity-ui-context-osgi.xml | 20 +-
.../stringconstant-activity-ui-context.xml | 12 +-
.../views/TestStringConstantContextualView.java | 53 -
.../views/TestStringConstantContextualView.java | 52 +
.../net/sf/taverna/t2/lang/ui/CArrowImage.java | 198 --
.../t2/lang/ui/CTransferableTreePath.java | 66 -
.../taverna/t2/lang/ui/DeselectingButton.java | 45 -
.../sf/taverna/t2/lang/ui/DialogTextArea.java | 83 -
.../sf/taverna/t2/lang/ui/EdgeLineBorder.java | 91 -
.../sf/taverna/t2/lang/ui/EditorKeySetUtil.java | 67 -
.../taverna/t2/lang/ui/ExtensionFileFilter.java | 105 -
.../net/sf/taverna/t2/lang/ui/FileTools.java | 117 --
.../net/sf/taverna/t2/lang/ui/HtmlUtils.java | 87 -
.../sf/taverna/t2/lang/ui/JSplitPaneExt.java | 56 -
.../sf/taverna/t2/lang/ui/KeywordDocument.java | 568 ------
.../t2/lang/ui/LineEnabledTextPanel.java | 106 -
.../net/sf/taverna/t2/lang/ui/LinePainter.java | 163 --
.../t2/lang/ui/LineWrappingTextArea.java | 217 ---
.../sf/taverna/t2/lang/ui/NoWrapEditorKit.java | 77 -
.../sf/taverna/t2/lang/ui/ReadOnlyTextArea.java | 50 -
.../t2/lang/ui/SanitisingDocumentFilter.java | 60 -
.../net/sf/taverna/t2/lang/ui/ShadedLabel.java | 126 --
.../net/sf/taverna/t2/lang/ui/TableMap.java | 69 -
.../net/sf/taverna/t2/lang/ui/TableSorter.java | 341 ----
.../t2/lang/ui/ValidatingUserInputDialog.java | 274 ---
.../net/sf/taverna/t2/lang/ui/icons/Icons.java | 48 -
.../lang/ui/tabselector/ScrollController.java | 85 -
.../sf/taverna/t2/lang/ui/tabselector/Tab.java | 200 --
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.../ui/tabselector/TabSelectorComponent.java | 99 -
.../lang/ui/treetable/AbstractCellEditor.java | 81 -
.../ui/treetable/AbstractTreeTableModel.java | 198 --
.../t2/lang/ui/treetable/JTreeTable.LICENSE | 59 -
.../t2/lang/ui/treetable/JTreeTable.java | 657 -------
.../t2/lang/ui/treetable/LinesBorder.java | 178 --
.../t2/lang/ui/treetable/TreeTableModel.java | 69 -
.../ui/treetable/TreeTableModelAdapter.java | 132 --
.../org/apache/taverna/lang/ui/CArrowImage.java | 197 ++
.../taverna/lang/ui/CTransferableTreePath.java | 65 +
.../taverna/lang/ui/DeselectingButton.java | 61 +
.../apache/taverna/lang/ui/DialogTextArea.java | 99 +
.../apache/taverna/lang/ui/EdgeLineBorder.java | 90 +
.../taverna/lang/ui/EditorKeySetUtil.java | 59 +
.../taverna/lang/ui/ExtensionFileFilter.java | 99 +
.../org/apache/taverna/lang/ui/FileTools.java | 133 ++
.../org/apache/taverna/lang/ui/HtmlUtils.java | 103 +
.../apache/taverna/lang/ui/JSplitPaneExt.java | 72 +
.../apache/taverna/lang/ui/KeywordDocument.java | 566 ++++++
.../taverna/lang/ui/LineEnabledTextPanel.java | 122 ++
.../org/apache/taverna/lang/ui/LinePainter.java | 182 ++
.../taverna/lang/ui/LineWrappingTextArea.java | 216 +++
.../apache/taverna/lang/ui/NoWrapEditorKit.java | 93 +
.../taverna/lang/ui/ReadOnlyTextArea.java | 66 +
.../lang/ui/SanitisingDocumentFilter.java | 76 +
.../org/apache/taverna/lang/ui/ShadedLabel.java | 120 ++
.../org/apache/taverna/lang/ui/TableMap.java | 66 +
.../org/apache/taverna/lang/ui/TableSorter.java | 338 ++++
.../lang/ui/ValidatingUserInputDialog.java | 273 +++
.../org/apache/taverna/lang/ui/icons/Icons.java | 47 +
.../lang/ui/tabselector/ScrollController.java | 84 +
.../apache/taverna/lang/ui/tabselector/Tab.java | 199 ++
.../taverna/lang/ui/tabselector/TabLayout.java | 134 ++
.../ui/tabselector/TabSelectorComponent.java | 98 +
.../lang/ui/treetable/AbstractCellEditor.java | 80 +
.../ui/treetable/AbstractTreeTableModel.java | 198 ++
.../lang/ui/treetable/JTreeTable.LICENSE | 59 +
.../taverna/lang/ui/treetable/JTreeTable.java | 657 +++++++
.../taverna/lang/ui/treetable/LinesBorder.java | 178 ++
.../lang/ui/treetable/TreeTableModel.java | 69 +
.../ui/treetable/TreeTableModelAdapter.java | 132 ++
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.../lang/uibuilder/AbstractListComponent.java | 521 -----
.../t2/lang/uibuilder/AlignableComponent.java | 29 -
.../sf/taverna/t2/lang/uibuilder/Alignment.java | 66 -
.../taverna/t2/lang/uibuilder/BeanCheckBox.java | 54 -
.../t2/lang/uibuilder/BeanComponent.java | 420 ----
.../t2/lang/uibuilder/BeanEnumComboBox.java | 89 -
.../taverna/t2/lang/uibuilder/BeanTextArea.java | 89 -
.../t2/lang/uibuilder/BeanTextComponent.java | 174 --
.../t2/lang/uibuilder/BeanTextField.java | 60 -
.../net/sf/taverna/t2/lang/uibuilder/Icons.java | 41 -
.../taverna/t2/lang/uibuilder/ListHandler.java | 67 -
.../lang/uibuilder/RecursiveListComponent.java | 98 -
.../sf/taverna/t2/lang/uibuilder/UIBuilder.java | 236 ---
.../lang/uibuilder/UIConstructionException.java | 29 -
.../t2/lang/uibuilder/WrappedListComponent.java | 105 -
.../sf/taverna/t2/lang/uibuilder/package.html | 4 -
.../lang/uibuilder/AbstractListComponent.java | 540 ++++++
.../lang/uibuilder/AlignableComponent.java | 48 +
.../taverna/lang/uibuilder/Alignment.java | 85 +
.../taverna/lang/uibuilder/BeanCheckBox.java | 73 +
.../taverna/lang/uibuilder/BeanComponent.java | 439 +++++
.../lang/uibuilder/BeanEnumComboBox.java | 108 ++
.../taverna/lang/uibuilder/BeanTextArea.java | 108 ++
.../lang/uibuilder/BeanTextComponent.java | 193 ++
.../taverna/lang/uibuilder/BeanTextField.java | 79 +
.../apache/taverna/lang/uibuilder/Icons.java | 60 +
.../taverna/lang/uibuilder/ListHandler.java | 86 +
.../lang/uibuilder/RecursiveListComponent.java | 117 ++
.../taverna/lang/uibuilder/UIBuilder.java | 255 +++
.../lang/uibuilder/UIConstructionException.java | 48 +
.../lang/uibuilder/WrappedListComponent.java | 124 ++
.../apache/taverna/lang/uibuilder/package.html | 4 +
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.../org/apache/taverna/lang/uibuilder/up.png | Bin 0 -> 1074 bytes
.../taverna/t2/lang/uibuilder/Application.java | 48 -
.../taverna/t2/lang/uibuilder/Application2.java | 44 -
.../t2/lang/uibuilder/BeanWithBoundProps.java | 74 -
.../lang/uibuilder/BeanWithListProperties.java | 35 -
.../t2/lang/uibuilder/BeanWithNestedList.java | 28 -
.../t2/lang/uibuilder/PrimitiveTypeBean.java | 101 -
.../taverna/t2/lang/uibuilder/SampleEnum.java | 13 -
.../taverna/t2/lang/uibuilder/TopLevelBean.java | 43 -
.../taverna/lang/uibuilder/Application.java | 67 +
.../taverna/lang/uibuilder/Application2.java | 63 +
.../lang/uibuilder/BeanWithBoundProps.java | 93 +
.../lang/uibuilder/BeanWithListProperties.java | 54 +
.../lang/uibuilder/BeanWithNestedList.java | 47 +
.../lang/uibuilder/PrimitiveTypeBean.java | 120 ++
.../taverna/lang/uibuilder/SampleEnum.java | 32 +
.../taverna/lang/uibuilder/TopLevelBean.java | 62 +
.../views/UnrecognizedActivityViewFactory.java | 48 -
.../views/UnrecognizedContextualView.java | 56 -
.../views/UnrecognizedActivityViewFactory.java | 67 +
.../views/UnrecognizedContextualView.java | 72 +
...ntextualviews.activity.ContextualViewFactory | 1 -
...ntextualviews.activity.ContextualViewFactory | 1 +
.../unrecognized-activity-ui-context-osgi.xml | 4 +-
.../spring/unrecognized-activity-ui-context.xml | 2 +-
.../update/impl/UpdateManagerView.java | 45 -
.../update/impl/menu/UpdateMenuAction.java | 92 -
.../updatemanager/PluginMenuAction.java | 52 -
.../UpdatesAvailableMenuAction.java | 19 -
.../updatemanager/UpdatesToolbarSection.java | 16 -
.../update/impl/UpdateManagerView.java | 44 +
.../update/impl/menu/UpdateMenuAction.java | 91 +
.../updatemanager/PluginMenuAction.java | 71 +
.../UpdatesAvailableMenuAction.java | 38 +
.../updatemanager/UpdatesToolbarSection.java | 35 +
.../META-INF/spring/update-manager-context.xml | 2 +-
.../net/sf/taverna/t2/workbench/MainWindow.java | 16 -
.../taverna/t2/workbench/ModelMapConstants.java | 28 -
.../sf/taverna/t2/workbench/ShutdownSPI.java | 72 -
.../net/sf/taverna/t2/workbench/StartupSPI.java | 65 -
.../t2/workbench/icons/WorkbenchIcons.java | 214 ---
.../ui/SwingWorkerCompletionWaiter.java | 33 -
.../sf/taverna/t2/workbench/ui/Updatable.java | 32 -
.../net/sf/taverna/t2/workbench/ui/Utils.java | 20 -
.../sf/taverna/t2/workbench/ui/Workbench.java | 33 -
.../t2/workbench/ui/zaria/PerspectiveSPI.java | 77 -
.../ui/zaria/UIComponentFactorySPI.java | 56 -
.../t2/workbench/ui/zaria/UIComponentSPI.java | 56 -
.../apache/taverna/workbench/MainWindow.java | 35 +
.../taverna/workbench/ModelMapConstants.java | 27 +
.../apache/taverna/workbench/ShutdownSPI.java | 71 +
.../apache/taverna/workbench/StartupSPI.java | 64 +
.../taverna/workbench/icons/WorkbenchIcons.java | 213 ++
.../ui/SwingWorkerCompletionWaiter.java | 49 +
.../apache/taverna/workbench/ui/Updatable.java | 31 +
.../org/apache/taverna/workbench/ui/Utils.java | 39 +
.../apache/taverna/workbench/ui/Workbench.java | 32 +
.../workbench/ui/zaria/PerspectiveSPI.java | 76 +
.../ui/zaria/UIComponentFactorySPI.java | 55 +
.../workbench/ui/zaria/UIComponentSPI.java | 50 +
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.../taverna/workbench/icons/generic/copy.png | Bin 0 -> 389 bytes
.../taverna/workbench/icons/generic/cut.png | Bin 0 -> 710 bytes
.../workbench/icons/generic/database.gif | Bin 0 -> 1032 bytes
.../taverna/workbench/icons/generic/delete.png | Bin 0 -> 565 bytes
.../workbench/icons/generic/down-arrow.png | Bin 0 -> 331 bytes
.../taverna/workbench/icons/generic/edit.gif | Bin 0 -> 579 bytes
.../workbench/icons/generic/fileimport.png | Bin 0 -> 851 bytes
.../taverna/workbench/icons/generic/find.gif | Bin 0 -> 346 bytes
.../workbench/icons/generic/folder-closed.png | Bin 0 -> 621 bytes
.../workbench/icons/generic/folder-open.png | Bin 0 -> 626 bytes
.../workbench/icons/generic/greentick.png | Bin 0 -> 331 bytes
.../taverna/workbench/icons/generic/import.gif | Bin 0 -> 929 bytes
.../workbench/icons/generic/inputValue.gif | Bin 0 -> 561 bytes
.../taverna/workbench/icons/generic/janus.png | Bin 0 -> 395 bytes
.../taverna/workbench/icons/generic/leaf.gif | Bin 0 -> 194 bytes
.../taverna/workbench/icons/generic/minus.png | Bin 0 -> 214 bytes
.../workbench/icons/generic/newinput.gif | Bin 0 -> 357 bytes
.../taverna/workbench/icons/generic/newlist.gif | Bin 0 -> 350 bytes
.../workbench/icons/generic/normalize.png | Bin 0 -> 580 bytes
.../taverna/workbench/icons/generic/open.gif | Bin 0 -> 216 bytes
.../workbench/icons/generic/openmenu.gif | Bin 0 -> 251 bytes
.../taverna/workbench/icons/generic/openurl.gif | Bin 0 -> 362 bytes
.../taverna/workbench/icons/generic/opmIcon.png | Bin 0 -> 376 bytes
.../taverna/workbench/icons/generic/paste.png | Bin 0 -> 490 bytes
.../taverna/workbench/icons/generic/pause.png | Bin 0 -> 385 bytes
.../taverna/workbench/icons/generic/play.png | Bin 0 -> 341 bytes
.../taverna/workbench/icons/generic/plus.png | Bin 0 -> 345 bytes
.../taverna/workbench/icons/generic/rbreak.gif | Bin 0 -> 1161 bytes
.../taverna/workbench/icons/generic/redo.png | Bin 0 -> 513 bytes
.../taverna/workbench/icons/generic/refresh.gif | Bin 0 -> 336 bytes
.../taverna/workbench/icons/generic/rename.png | Bin 0 -> 212 bytes
.../icons/generic/results-perspective.png | Bin 0 -> 542 bytes
.../taverna/workbench/icons/generic/run.gif | Bin 0 -> 318 bytes
.../taverna/workbench/icons/generic/save.gif | Bin 0 -> 639 bytes
.../taverna/workbench/icons/generic/save.png | Bin 0 -> 631 bytes
.../taverna/workbench/icons/generic/saveAll.png | Bin 0 -> 624 bytes
.../taverna/workbench/icons/generic/saveAs.png | Bin 0 -> 529 bytes
.../workbench/icons/generic/savemenu.gif | Bin 0 -> 661 bytes
.../taverna/workbench/icons/generic/savepng.gif | Bin 0 -> 988 bytes
.../taverna/workbench/icons/generic/search.png | Bin 0 -> 1023 bytes
.../taverna/workbench/icons/generic/stop.gif | Bin 0 -> 268 bytes
.../taverna-wheel-message-dialog-error-icon.png | Bin 0 -> 11424 bytes
.../taverna-wheel-message-dialog-info-icon.png | Bin 0 -> 11383 bytes
...verna-wheel-message-dialog-question-icon.png | Bin 0 -> 11312 bytes
...averna-wheel-message-dialog-warning-icon.png | Bin 0 -> 11254 bytes
.../icons/generic/taverna_cogs_32x32.png | Bin 0 -> 3094 bytes
.../icons/generic/taverna_cogs_64x64.png | Bin 0 -> 11014 bytes
.../taverna/workbench/icons/generic/tick.png | Bin 0 -> 537 bytes
.../taverna/workbench/icons/generic/undo.png | Bin 0 -> 548 bytes
.../workbench/icons/generic/uninstall.png | Bin 0 -> 639 bytes
.../taverna/workbench/icons/generic/untick.png | Bin 0 -> 664 bytes
.../workbench/icons/generic/up-arrow.png | Bin 0 -> 300 bytes
.../taverna/workbench/icons/generic/update.png | Bin 0 -> 689 bytes
.../icons/generic/updateRecommended.png | Bin 0 -> 731 bytes
.../workbench/icons/generic/urlimport.png | Bin 0 -> 969 bytes
.../taverna/workbench/icons/generic/web.gif | Bin 0 -> 362 bytes
.../workbench/icons/generic/workflowResults.png | Bin 0 -> 736 bytes
.../taverna/workbench/icons/generic/working.gif | Bin 0 -> 673 bytes
.../workbench/icons/generic/workingStopped.png | Bin 0 -> 258 bytes
.../workbench/icons/generic/xml_node.gif | Bin 0 -> 82 bytes
.../taverna/workbench/icons/generic/zoom.gif | Bin 0 -> 545 bytes
.../taverna/workbench/icons/generic/zoomin.gif | 78 +
.../taverna/workbench/icons/generic/zoomin.png | Bin 0 -> 659 bytes
.../taverna/workbench/icons/generic/zoomout.png | Bin 0 -> 607 bytes
.../taverna/workbench/icons/graph/allport.png | Bin 0 -> 652 bytes
.../taverna/workbench/icons/graph/allport.svg | 124 ++
.../taverna/workbench/icons/graph/blob.png | Bin 0 -> 468 bytes
.../taverna/workbench/icons/graph/blob.svg | 72 +
.../workbench/icons/graph/expandnested.png | Bin 0 -> 718 bytes
.../workbench/icons/graph/expandnested.svg | 130 ++
.../workbench/icons/graph/horizontal.png | Bin 0 -> 380 bytes
.../workbench/icons/graph/horizontal.svg | 152 ++
.../taverna/workbench/icons/graph/noport.png | Bin 0 -> 482 bytes
.../taverna/workbench/icons/graph/noport.svg | 82 +
.../taverna/workbench/icons/graph/saveAsDOT.png | Bin 0 -> 1105 bytes
.../taverna/workbench/icons/graph/saveAsPNG.png | Bin 0 -> 1337 bytes
.../taverna/workbench/icons/graph/saveAsPS.png | Bin 0 -> 1019 bytes
.../taverna/workbench/icons/graph/saveAsPS2.png | Bin 0 -> 1018 bytes
.../taverna/workbench/icons/graph/saveAsSVG.png | Bin 0 -> 1416 bytes
.../taverna/workbench/icons/graph/trash.png | Bin 0 -> 482 bytes
.../taverna/workbench/icons/graph/vertical.png | Bin 0 -> 383 bytes
.../taverna/workbench/icons/graph/vertical.svg | 150 ++
.../ui/impl/DataflowEditsListener.java | 93 -
.../t2/workbench/ui/impl/LoggerStream.java | 136 --
.../ui/impl/SetConsoleLoggerStartup.java | 62 -
.../ui/impl/StoreWindowStateOnShutdown.java | 58 -
.../workbench/ui/impl/UserRegistrationData.java | 105 -
.../workbench/ui/impl/UserRegistrationForm.java | 995 ----------
.../workbench/ui/impl/UserRegistrationHook.java | 163 --
.../t2/workbench/ui/impl/WorkbenchImpl.java | 538 ------
.../ui/impl/WorkbenchPerspectives.java | 229 ---
.../t2/workbench/ui/impl/menu/ExitAction.java | 66 -
.../ui/impl/DataflowEditsListener.java | 112 ++
.../taverna/workbench/ui/impl/LoggerStream.java | 136 ++
.../ui/impl/SetConsoleLoggerStartup.java | 81 +
.../ui/impl/StoreWindowStateOnShutdown.java | 57 +
.../workbench/ui/impl/UserRegistrationData.java | 104 +
.../workbench/ui/impl/UserRegistrationForm.java | 994 ++++++++++
.../workbench/ui/impl/UserRegistrationHook.java | 162 ++
.../workbench/ui/impl/WorkbenchImpl.java | 537 ++++++
.../ui/impl/WorkbenchPerspectives.java | 228 +++
.../workbench/ui/impl/menu/ExitAction.java | 65 +
.../net.sf.taverna.raven.launcher.Launchable | 1 -
.../net.sf.taverna.t2.ui.menu.MenuComponent | 18 -
.../net.sf.taverna.t2.workbench.ShutdownSPI | 1 -
.../net.sf.taverna.t2.workbench.StartupSPI | 2 -
...org.apache.taverna.raven.launcher.Launchable | 1 +
.../org.apache.taverna.ui.menu.MenuComponent | 17 +
.../org.apache.taverna.workbench.ShutdownSPI | 1 +
.../org.apache.taverna.workbench.StartupSPI | 2 +
.../spring/workbench-impl-context-osgi.xml | 26 +-
.../META-INF/spring/workbench-impl-context.xml | 16 +-
.../workbench/ui/impl/UserRegistrationTest.java | 190 --
.../workbench/ui/impl/UserRegistrationTest.java | 189 ++
.../ui/workflowexplorer/WorkflowExplorer.java | 824 --------
.../WorkflowExplorerFactory.java | 95 -
.../WorkflowExplorerTreeCellRenderer.java | 216 ---
.../WorkflowExplorerTreeModel.java | 404 ----
.../WorkflowExplorerTreeSelectionModel.java | 45 -
.../ui/workflowexplorer/WorkflowExplorer.java | 822 ++++++++
.../WorkflowExplorerFactory.java | 94 +
.../WorkflowExplorerTreeCellRenderer.java | 214 +++
.../WorkflowExplorerTreeModel.java | 403 ++++
.../WorkflowExplorerTreeSelectionModel.java | 44 +
....t2.workbench.ui.zaria.UIComponentFactorySPI | 1 -
...taverna.t2.workbench.ui.zaria.UIComponentSPI | 1 -
...rna.workbench.ui.zaria.UIComponentFactorySPI | 1 +
...he.taverna.workbench.ui.zaria.UIComponentSPI | 1 +
.../spring/workflow-explorer-context-osgi.xml | 14 +-
.../spring/workflow-explorer-context.xml | 2 +-
.../ui/actions/CopyGraphComponentAction.java | 143 --
.../ui/actions/CopyProcessorAction.java | 53 -
.../ui/actions/CutGraphComponentAction.java | 153 --
.../ui/actions/CutProcessorAction.java | 69 -
.../ui/actions/PasteGraphComponentAction.java | 98 -
.../ui/dndhandler/ServiceTransferHandler.java | 119 --
.../ui/menu/CopyGraphComponentMenuAction.java | 54 -
.../ui/menu/CopyProcessorMenuAction.java | 56 -
.../ui/menu/CutGraphComponentMenuAction.java | 60 -
.../ui/menu/CutProcessorMenuAction.java | 69 -
.../ui/menu/PasteGraphComponentMenuAction.java | 73 -
.../workbench/ui/toolbar/CopyToolbarAction.java | 51 -
.../workbench/ui/toolbar/CutToolbarAction.java | 57 -
.../ui/toolbar/PasteToolbarAction.java | 70 -
.../ui/workflowview/ShowExceptionRunnable.java | 26 -
.../workbench/ui/workflowview/WorkflowView.java | 414 ----
.../ui/actions/CopyGraphComponentAction.java | 142 ++
.../ui/actions/CopyProcessorAction.java | 52 +
.../ui/actions/CutGraphComponentAction.java | 152 ++
.../ui/actions/CutProcessorAction.java | 68 +
.../ui/actions/PasteGraphComponentAction.java | 97 +
.../ui/dndhandler/ServiceTransferHandler.java | 118 ++
.../ui/menu/CopyGraphComponentMenuAction.java | 53 +
.../ui/menu/CopyProcessorMenuAction.java | 55 +
.../ui/menu/CutGraphComponentMenuAction.java | 59 +
.../ui/menu/CutProcessorMenuAction.java | 68 +
.../ui/menu/PasteGraphComponentMenuAction.java | 72 +
.../workbench/ui/toolbar/CopyToolbarAction.java | 50 +
.../workbench/ui/toolbar/CutToolbarAction.java | 56 +
.../ui/toolbar/PasteToolbarAction.java | 69 +
.../ui/workflowview/ShowExceptionRunnable.java | 42 +
.../workbench/ui/workflowview/WorkflowView.java | 433 +++++
.../net.sf.taverna.t2.ui.menu.MenuComponent | 10 -
.../org.apache.taverna.ui.menu.MenuComponent | 10 +
.../spring/workflow-view-context-osgi.xml | 6 +-
.../META-INF/spring/workflow-view-context.xml | 16 +-
2287 files changed, 123952 insertions(+), 122524 deletions(-)
----------------------------------------------------------------------