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Posted to commits@rya.apache.org by mi...@apache.org on 2016/10/15 20:07:11 UTC
[51/69] [abbrv] [partial] incubator-rya git commit: RYA-198 Renaming
Files
RYA-198 Renaming Files
Project: http://git-wip-us.apache.org/repos/asf/incubator-rya/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-rya/commit/44a2dcf0
Tree: http://git-wip-us.apache.org/repos/asf/incubator-rya/tree/44a2dcf0
Diff: http://git-wip-us.apache.org/repos/asf/incubator-rya/diff/44a2dcf0
Branch: refs/heads/master
Commit: 44a2dcf065286ad6b122121ff7d3bf462c60dc3e
Parents: e541b71
Author: Aaron Mihalik <mi...@alum.mit.edu>
Authored: Fri Oct 14 14:59:50 2016 -0400
Committer: Aaron Mihalik <mi...@alum.mit.edu>
Committed: Fri Oct 14 15:33:14 2016 -0400
----------------------------------------------------------------------
.../InvalidValueTypeMarkerRuntimeException.java | 55 -
.../api/RdfCloudTripleStoreConfiguration.java | 520 -----
.../rya/api/RdfCloudTripleStoreConstants.java | 151 --
.../rya/api/RdfCloudTripleStoreStatement.java | 72 -
.../mvm/rya/api/RdfCloudTripleStoreUtils.java | 420 ----
.../java/mvm/rya/api/client/BatchUpdatePCJ.java | 40 -
.../main/java/mvm/rya/api/client/CreatePCJ.java | 40 -
.../main/java/mvm/rya/api/client/DeletePCJ.java | 38 -
.../mvm/rya/api/client/GetInstanceDetails.java | 44 -
.../main/java/mvm/rya/api/client/Install.java | 268 ---
.../client/InstanceDoesNotExistException.java | 38 -
.../java/mvm/rya/api/client/InstanceExists.java | 37 -
.../java/mvm/rya/api/client/ListInstances.java | 38 -
.../api/client/PCJDoesNotExistException.java | 38 -
.../main/java/mvm/rya/api/client/RyaClient.java | 112 -
.../mvm/rya/api/client/RyaClientException.java | 37 -
.../rya/api/date/DateTimeTtlValueConverter.java | 80 -
.../api/date/TimestampTtlStrValueConverter.java | 56 -
.../api/date/TimestampTtlValueConverter.java | 56 -
.../mvm/rya/api/date/TtlValueConverter.java | 41 -
.../src/main/java/mvm/rya/api/domain/Node.java | 38 -
.../main/java/mvm/rya/api/domain/RangeURI.java | 52 -
.../java/mvm/rya/api/domain/RangeValue.java | 72 -
.../main/java/mvm/rya/api/domain/RyaRange.java | 32 -
.../main/java/mvm/rya/api/domain/RyaSchema.java | 43 -
.../java/mvm/rya/api/domain/RyaStatement.java | 252 ---
.../main/java/mvm/rya/api/domain/RyaType.java | 135 --
.../java/mvm/rya/api/domain/RyaTypePrefix.java | 59 -
.../java/mvm/rya/api/domain/RyaTypeRange.java | 99 -
.../main/java/mvm/rya/api/domain/RyaURI.java | 63 -
.../java/mvm/rya/api/domain/RyaURIPrefix.java | 47 -
.../java/mvm/rya/api/domain/RyaURIRange.java | 95 -
.../rya/api/instance/ConfigurationFields.java | 35 -
.../java/mvm/rya/api/instance/RyaDetails.java | 1031 ---------
.../rya/api/instance/RyaDetailsRepository.java | 123 -
.../api/instance/RyaDetailsToConfiguration.java | 98 -
.../mvm/rya/api/instance/RyaDetailsUpdater.java | 124 -
.../mvm/rya/api/layout/TableLayoutStrategy.java | 40 -
.../api/layout/TablePrefixLayoutStrategy.java | 85 -
.../mvm/rya/api/persist/RdfDAOException.java | 44 -
.../mvm/rya/api/persist/RdfEvalStatsDAO.java | 54 -
.../java/mvm/rya/api/persist/RyaConfigured.java | 35 -
.../main/java/mvm/rya/api/persist/RyaDAO.java | 126 --
.../mvm/rya/api/persist/RyaDAOException.java | 43 -
.../rya/api/persist/RyaNamespaceManager.java | 41 -
.../api/persist/index/RyaSecondaryIndexer.java | 63 -
.../persist/joinselect/SelectivityEvalDAO.java | 37 -
.../rya/api/persist/query/BatchRyaQuery.java | 115 -
.../mvm/rya/api/persist/query/RyaQuery.java | 97 -
.../rya/api/persist/query/RyaQueryEngine.java | 96 -
.../rya/api/persist/query/RyaQueryOptions.java | 246 --
.../rya/api/persist/query/join/HashJoin.java | 158 --
.../api/persist/query/join/IterativeJoin.java | 233 --
.../mvm/rya/api/persist/query/join/Join.java | 44 -
.../rya/api/persist/query/join/MergeJoin.java | 244 --
.../mvm/rya/api/persist/utils/RyaDAOHelper.java | 176 --
.../strategy/AbstractTriplePatternStrategy.java | 93 -
.../mvm/rya/api/query/strategy/ByteRange.java | 45 -
.../query/strategy/TriplePatternStrategy.java | 49 -
.../AbstractHashedTriplePatternStrategy.java | 90 -
.../HashedPoWholeRowTriplePatternStrategy.java | 136 --
.../HashedSpoWholeRowTriplePatternStrategy.java | 142 --
.../OspWholeRowTriplePatternStrategy.java | 113 -
.../PoWholeRowTriplePatternStrategy.java | 128 --
.../SpoWholeRowTriplePatternStrategy.java | 130 --
.../resolver/CustomRyaTypeResolverMapping.java | 57 -
.../rya/api/resolver/RdfToRyaConversions.java | 93 -
.../java/mvm/rya/api/resolver/RyaContext.java | 192 --
.../rya/api/resolver/RyaToRdfConversions.java | 75 -
.../mvm/rya/api/resolver/RyaTripleContext.java | 133 --
.../mvm/rya/api/resolver/RyaTypeResolver.java | 60 -
.../api/resolver/RyaTypeResolverException.java | 43 -
.../api/resolver/RyaTypeResolverMapping.java | 57 -
.../resolver/impl/BooleanRyaTypeResolver.java | 61 -
.../api/resolver/impl/ByteRyaTypeResolver.java | 63 -
.../resolver/impl/CustomDatatypeResolver.java | 70 -
.../resolver/impl/DateTimeRyaTypeResolver.java | 76 -
.../resolver/impl/DoubleRyaTypeResolver.java | 68 -
.../api/resolver/impl/FloatRyaTypeResolver.java | 64 -
.../resolver/impl/IntegerRyaTypeResolver.java | 67 -
.../api/resolver/impl/LongRyaTypeResolver.java | 68 -
.../api/resolver/impl/RyaTypeResolverImpl.java | 124 -
.../rya/api/resolver/impl/RyaURIResolver.java | 44 -
.../ServiceBackedRyaTypeResolverMappings.java | 45 -
.../api/resolver/impl/ShortRyaTypeResolver.java | 65 -
.../mvm/rya/api/resolver/triple/TripleRow.java | 107 -
.../rya/api/resolver/triple/TripleRowRegex.java | 84 -
.../api/resolver/triple/TripleRowResolver.java | 43 -
.../triple/TripleRowResolverException.java | 43 -
.../impl/WholeRowHashedTripleResolver.java | 160 --
.../triple/impl/WholeRowTripleResolver.java | 139 --
.../mvm/rya/api/security/SecurityProvider.java | 28 -
.../api/utils/CloseableIterableIteration.java | 76 -
.../mvm/rya/api/utils/EnumerationWrapper.java | 58 -
.../java/mvm/rya/api/utils/IteratorWrapper.java | 58 -
.../rya/api/utils/NullableStatementImpl.java | 105 -
.../api/utils/PeekingCloseableIteration.java | 74 -
.../RyaStatementAddBindingSetFunction.java | 40 -
...ementRemoveBindingSetCloseableIteration.java | 61 -
.../InvalidValueTypeMarkerRuntimeException.java | 55 +
.../api/RdfCloudTripleStoreConfiguration.java | 520 +++++
.../rya/api/RdfCloudTripleStoreConstants.java | 151 ++
.../rya/api/RdfCloudTripleStoreStatement.java | 72 +
.../rya/api/RdfCloudTripleStoreUtils.java | 420 ++++
.../apache/rya/api/client/BatchUpdatePCJ.java | 40 +
.../org/apache/rya/api/client/CreatePCJ.java | 40 +
.../org/apache/rya/api/client/DeletePCJ.java | 38 +
.../rya/api/client/GetInstanceDetails.java | 44 +
.../java/org/apache/rya/api/client/Install.java | 268 +++
.../client/InstanceDoesNotExistException.java | 38 +
.../apache/rya/api/client/InstanceExists.java | 37 +
.../apache/rya/api/client/ListInstances.java | 38 +
.../api/client/PCJDoesNotExistException.java | 38 +
.../org/apache/rya/api/client/RyaClient.java | 112 +
.../rya/api/client/RyaClientException.java | 37 +
.../rya/api/date/DateTimeTtlValueConverter.java | 80 +
.../api/date/TimestampTtlStrValueConverter.java | 56 +
.../api/date/TimestampTtlValueConverter.java | 56 +
.../apache/rya/api/date/TtlValueConverter.java | 41 +
.../java/org/apache/rya/api/domain/Node.java | 38 +
.../org/apache/rya/api/domain/RangeURI.java | 52 +
.../org/apache/rya/api/domain/RangeValue.java | 72 +
.../org/apache/rya/api/domain/RyaRange.java | 32 +
.../org/apache/rya/api/domain/RyaSchema.java | 43 +
.../org/apache/rya/api/domain/RyaStatement.java | 252 +++
.../java/org/apache/rya/api/domain/RyaType.java | 135 ++
.../apache/rya/api/domain/RyaTypePrefix.java | 59 +
.../org/apache/rya/api/domain/RyaTypeRange.java | 99 +
.../java/org/apache/rya/api/domain/RyaURI.java | 63 +
.../org/apache/rya/api/domain/RyaURIPrefix.java | 47 +
.../org/apache/rya/api/domain/RyaURIRange.java | 95 +
.../rya/api/instance/ConfigurationFields.java | 35 +
.../org/apache/rya/api/instance/RyaDetails.java | 1031 +++++++++
.../rya/api/instance/RyaDetailsRepository.java | 123 +
.../api/instance/RyaDetailsToConfiguration.java | 98 +
.../rya/api/instance/RyaDetailsUpdater.java | 124 +
.../rya/api/layout/TableLayoutStrategy.java | 40 +
.../api/layout/TablePrefixLayoutStrategy.java | 85 +
.../apache/rya/api/persist/RdfDAOException.java | 44 +
.../apache/rya/api/persist/RdfEvalStatsDAO.java | 54 +
.../apache/rya/api/persist/RyaConfigured.java | 35 +
.../java/org/apache/rya/api/persist/RyaDAO.java | 126 ++
.../apache/rya/api/persist/RyaDAOException.java | 43 +
.../rya/api/persist/RyaNamespaceManager.java | 41 +
.../api/persist/index/RyaSecondaryIndexer.java | 63 +
.../persist/joinselect/SelectivityEvalDAO.java | 37 +
.../rya/api/persist/query/BatchRyaQuery.java | 115 +
.../apache/rya/api/persist/query/RyaQuery.java | 97 +
.../rya/api/persist/query/RyaQueryEngine.java | 96 +
.../rya/api/persist/query/RyaQueryOptions.java | 246 ++
.../rya/api/persist/query/join/HashJoin.java | 158 ++
.../api/persist/query/join/IterativeJoin.java | 233 ++
.../apache/rya/api/persist/query/join/Join.java | 44 +
.../rya/api/persist/query/join/MergeJoin.java | 244 ++
.../rya/api/persist/utils/RyaDAOHelper.java | 176 ++
.../strategy/AbstractTriplePatternStrategy.java | 93 +
.../rya/api/query/strategy/ByteRange.java | 45 +
.../query/strategy/TriplePatternStrategy.java | 49 +
.../AbstractHashedTriplePatternStrategy.java | 90 +
.../HashedPoWholeRowTriplePatternStrategy.java | 136 ++
.../HashedSpoWholeRowTriplePatternStrategy.java | 142 ++
.../OspWholeRowTriplePatternStrategy.java | 113 +
.../PoWholeRowTriplePatternStrategy.java | 128 ++
.../SpoWholeRowTriplePatternStrategy.java | 130 ++
.../resolver/CustomRyaTypeResolverMapping.java | 57 +
.../rya/api/resolver/RdfToRyaConversions.java | 93 +
.../org/apache/rya/api/resolver/RyaContext.java | 192 ++
.../rya/api/resolver/RyaToRdfConversions.java | 75 +
.../rya/api/resolver/RyaTripleContext.java | 133 ++
.../rya/api/resolver/RyaTypeResolver.java | 60 +
.../api/resolver/RyaTypeResolverException.java | 43 +
.../api/resolver/RyaTypeResolverMapping.java | 57 +
.../resolver/impl/BooleanRyaTypeResolver.java | 61 +
.../api/resolver/impl/ByteRyaTypeResolver.java | 63 +
.../resolver/impl/CustomDatatypeResolver.java | 70 +
.../resolver/impl/DateTimeRyaTypeResolver.java | 76 +
.../resolver/impl/DoubleRyaTypeResolver.java | 68 +
.../api/resolver/impl/FloatRyaTypeResolver.java | 64 +
.../resolver/impl/IntegerRyaTypeResolver.java | 67 +
.../api/resolver/impl/LongRyaTypeResolver.java | 68 +
.../api/resolver/impl/RyaTypeResolverImpl.java | 124 +
.../rya/api/resolver/impl/RyaURIResolver.java | 44 +
.../ServiceBackedRyaTypeResolverMappings.java | 45 +
.../api/resolver/impl/ShortRyaTypeResolver.java | 65 +
.../rya/api/resolver/triple/TripleRow.java | 107 +
.../rya/api/resolver/triple/TripleRowRegex.java | 84 +
.../api/resolver/triple/TripleRowResolver.java | 43 +
.../triple/TripleRowResolverException.java | 43 +
.../impl/WholeRowHashedTripleResolver.java | 160 ++
.../triple/impl/WholeRowTripleResolver.java | 139 ++
.../rya/api/security/SecurityProvider.java | 28 +
.../api/utils/CloseableIterableIteration.java | 76 +
.../rya/api/utils/EnumerationWrapper.java | 58 +
.../apache/rya/api/utils/IteratorWrapper.java | 58 +
.../rya/api/utils/NullableStatementImpl.java | 105 +
.../api/utils/PeekingCloseableIteration.java | 74 +
.../RyaStatementAddBindingSetFunction.java | 40 +
...ementRemoveBindingSetCloseableIteration.java | 61 +
.../java/mvm/rya/api/domain/RyaTypeTest.java | 119 -
.../mvm/rya/api/domain/RyaURIPrefixTest.java | 37 -
.../mvm/rya/api/instance/RyaDetailsTest.java | 140 --
.../instance/RyaDetailsToConfigurationTest.java | 84 -
.../rya/api/instance/RyaDetailsUpdaterTest.java | 141 --
.../mvm/rya/api/persist/query/RyaQueryTest.java | 63 -
.../AbstractTriplePatternStrategyTest.java | 192 --
...shedPoWholeRowTriplePatternStrategyTest.java | 244 --
...hedSpoWholeRowTriplePatternStrategyTest.java | 199 --
.../wholerow/MockRdfCloudConfiguration.java | 32 -
.../OspWholeRowTriplePatternStrategyTest.java | 135 --
.../PoWholeRowTriplePatternStrategyTest.java | 159 --
.../SpoWholeRowTriplePatternStrategyTest.java | 185 --
.../mvm/rya/api/resolver/RyaContextTest.java | 86 -
.../impl/CustomDatatypeResolverTest.java | 40 -
.../impl/DateTimeRyaTypeResolverTest.java | 177 --
.../impl/DoubleRyaTypeResolverTest.java | 46 -
.../impl/IntegerRyaTypeResolverTest.java | 44 -
.../resolver/impl/LongRyaTypeResolverTest.java | 49 -
.../api/resolver/impl/RyaURIResolverTest.java | 40 -
.../impl/HashedWholeRowTripleResolverTest.java | 124 -
.../triple/impl/WholeRowTripleResolverTest.java | 127 --
.../test/java/mvm/rya/api/utils/RdfIOTest.java | 67 -
.../org/apache/rya/api/domain/RyaTypeTest.java | 119 +
.../apache/rya/api/domain/RyaURIPrefixTest.java | 37 +
.../apache/rya/api/instance/RyaDetailsTest.java | 140 ++
.../instance/RyaDetailsToConfigurationTest.java | 84 +
.../rya/api/instance/RyaDetailsUpdaterTest.java | 141 ++
.../rya/api/persist/query/RyaQueryTest.java | 63 +
.../AbstractTriplePatternStrategyTest.java | 192 ++
...shedPoWholeRowTriplePatternStrategyTest.java | 244 ++
...hedSpoWholeRowTriplePatternStrategyTest.java | 199 ++
.../wholerow/MockRdfCloudConfiguration.java | 32 +
.../OspWholeRowTriplePatternStrategyTest.java | 135 ++
.../PoWholeRowTriplePatternStrategyTest.java | 159 ++
.../SpoWholeRowTriplePatternStrategyTest.java | 185 ++
.../apache/rya/api/resolver/RyaContextTest.java | 86 +
.../impl/CustomDatatypeResolverTest.java | 40 +
.../impl/DateTimeRyaTypeResolverTest.java | 177 ++
.../impl/DoubleRyaTypeResolverTest.java | 46 +
.../impl/IntegerRyaTypeResolverTest.java | 44 +
.../resolver/impl/LongRyaTypeResolverTest.java | 49 +
.../api/resolver/impl/RyaURIResolverTest.java | 40 +
.../impl/HashedWholeRowTripleResolverTest.java | 124 +
.../triple/impl/WholeRowTripleResolverTest.java | 127 ++
.../org/apache/rya/api/utils/RdfIOTest.java | 67 +
.../provenance/LoggingProvenanceCollector.java | 41 -
.../ProvenanceCollectionException.java | 39 -
.../provenance/ProvenanceCollector.java | 34 -
.../TriplestoreProvenanceCollector.java | 68 -
.../provenance/rdf/BaseProvenanceModel.java | 68 -
.../provenance/rdf/RDFProvenanceModel.java | 33 -
.../provenance/LoggingProvenanceCollector.java | 41 +
.../ProvenanceCollectionException.java | 39 +
.../provenance/ProvenanceCollector.java | 34 +
.../TriplestoreProvenanceCollector.java | 68 +
.../provenance/rdf/BaseProvenanceModel.java | 68 +
.../provenance/rdf/RDFProvenanceModel.java | 33 +
.../TriplestoreProvenanceCollectorTest.java | 51 -
.../provenance/rdf/BaseProvenanceModelTest.java | 38 -
.../TriplestoreProvenanceCollectorTest.java | 51 +
.../provenance/rdf/BaseProvenanceModelTest.java | 38 +
.../AccumuloNamespaceTableIterator.java | 99 -
.../rya/accumulo/AccumuloRdfConfiguration.java | 158 --
.../mvm/rya/accumulo/AccumuloRdfConstants.java | 40 -
.../rya/accumulo/AccumuloRdfEvalStatsDAO.java | 173 --
.../rya/accumulo/AccumuloRdfQueryIterator.java | 297 ---
.../java/mvm/rya/accumulo/AccumuloRdfUtils.java | 72 -
.../java/mvm/rya/accumulo/AccumuloRyaDAO.java | 551 -----
.../accumulo/DefineTripleQueryRangeFactory.java | 152 --
.../mvm/rya/accumulo/RyaTableKeyValues.java | 115 -
.../rya/accumulo/RyaTableMutationsFactory.java | 148 --
.../experimental/AbstractAccumuloIndexer.java | 59 -
.../accumulo/experimental/AccumuloIndexer.java | 38 -
.../AccumuloRyaInstanceDetailsRepository.java | 229 --
.../accumulo/instance/RyaDetailsSerializer.java | 96 -
.../accumulo/query/AccumuloRyaQueryEngine.java | 410 ----
.../query/KeyValueToRyaStatementFunction.java | 72 -
.../accumulo/query/RangeBindingSetEntries.java | 58 -
.../RyaStatementBindingSetKeyValueIterator.java | 154 --
.../query/RyaStatementKeyValueIterator.java | 107 -
.../query/ScannerBaseCloseableIterable.java | 56 -
.../mvm/rya/accumulo/utils/TimeRangeFilter.java | 87 -
.../accumulo/utils/VisibilitySimplifier.java | 54 -
.../AccumuloNamespaceTableIterator.java | 99 +
.../rya/accumulo/AccumuloRdfConfiguration.java | 158 ++
.../rya/accumulo/AccumuloRdfConstants.java | 40 +
.../rya/accumulo/AccumuloRdfEvalStatsDAO.java | 173 ++
.../rya/accumulo/AccumuloRdfQueryIterator.java | 297 +++
.../apache/rya/accumulo/AccumuloRdfUtils.java | 72 +
.../org/apache/rya/accumulo/AccumuloRyaDAO.java | 551 +++++
.../accumulo/DefineTripleQueryRangeFactory.java | 152 ++
.../apache/rya/accumulo/RyaTableKeyValues.java | 115 +
.../rya/accumulo/RyaTableMutationsFactory.java | 148 ++
.../experimental/AbstractAccumuloIndexer.java | 59 +
.../accumulo/experimental/AccumuloIndexer.java | 38 +
.../AccumuloRyaInstanceDetailsRepository.java | 229 ++
.../accumulo/instance/RyaDetailsSerializer.java | 96 +
.../accumulo/query/AccumuloRyaQueryEngine.java | 410 ++++
.../query/KeyValueToRyaStatementFunction.java | 72 +
.../accumulo/query/RangeBindingSetEntries.java | 58 +
.../RyaStatementBindingSetKeyValueIterator.java | 154 ++
.../query/RyaStatementKeyValueIterator.java | 107 +
.../query/ScannerBaseCloseableIterable.java | 56 +
.../rya/accumulo/utils/TimeRangeFilter.java | 87 +
.../accumulo/utils/VisibilitySimplifier.java | 54 +
.../java/mvm/rya/accumulo/AccumuloITBase.java | 105 -
.../accumulo/AccumuloRdfConfigurationTest.java | 75 -
.../mvm/rya/accumulo/AccumuloRyaDAOTest.java | 713 ------
.../mvm/rya/accumulo/AccumuloRyaITBase.java | 109 -
.../DefineTripleQueryRangeFactoryTest.java | 265 ---
.../accumulo/MiniAccumuloClusterInstance.java | 119 -
.../AccumuloRyaDetailsRepositoryIT.java | 304 ---
.../utils/VisibilitySimplifierTest.java | 53 -
.../org/apache/rya/accumulo/AccumuloITBase.java | 105 +
.../accumulo/AccumuloRdfConfigurationTest.java | 75 +
.../apache/rya/accumulo/AccumuloRyaDAOTest.java | 713 ++++++
.../apache/rya/accumulo/AccumuloRyaITBase.java | 109 +
.../DefineTripleQueryRangeFactoryTest.java | 265 +++
.../accumulo/MiniAccumuloClusterInstance.java | 119 +
.../AccumuloRyaDetailsRepositoryIT.java | 304 +++
.../utils/VisibilitySimplifierTest.java | 53 +
.../mvm/rya/mongodb/MongoConnectorFactory.java | 138 --
.../mvm/rya/mongodb/MongoDBQueryEngine.java | 202 --
.../rya/mongodb/MongoDBRdfConfiguration.java | 128 --
.../java/mvm/rya/mongodb/MongoDBRyaDAO.java | 233 --
.../mvm/rya/mongodb/MongoSecondaryIndex.java | 31 -
.../mongodb/dao/MongoDBNamespaceManager.java | 35 -
.../rya/mongodb/dao/MongoDBStorageStrategy.java | 45 -
.../dao/SimpleMongoDBNamespaceManager.java | 181 --
.../dao/SimpleMongoDBStorageStrategy.java | 162 --
.../mongodb/instance/MongoDetailsAdapter.java | 236 --
.../MongoRyaInstanceDetailsRepository.java | 144 --
.../NonCloseableRyaStatementCursorIterator.java | 57 -
.../RyaStatementBindingSetCursorIterator.java | 125 --
.../iter/RyaStatementCursorIterable.java | 67 -
.../iter/RyaStatementCursorIterator.java | 104 -
.../rya/mongodb/MongoConnectorFactory.java | 138 ++
.../apache/rya/mongodb/MongoDBQueryEngine.java | 202 ++
.../rya/mongodb/MongoDBRdfConfiguration.java | 128 ++
.../org/apache/rya/mongodb/MongoDBRyaDAO.java | 233 ++
.../apache/rya/mongodb/MongoSecondaryIndex.java | 31 +
.../mongodb/dao/MongoDBNamespaceManager.java | 35 +
.../rya/mongodb/dao/MongoDBStorageStrategy.java | 45 +
.../dao/SimpleMongoDBNamespaceManager.java | 181 ++
.../dao/SimpleMongoDBStorageStrategy.java | 162 ++
.../mongodb/instance/MongoDetailsAdapter.java | 236 ++
.../MongoRyaInstanceDetailsRepository.java | 144 ++
.../NonCloseableRyaStatementCursorIterator.java | 57 +
.../RyaStatementBindingSetCursorIterator.java | 125 ++
.../iter/RyaStatementCursorIterable.java | 67 +
.../iter/RyaStatementCursorIterator.java | 104 +
.../mvm/rya/mongodb/MongoDBQueryEngineTest.java | 124 -
.../java/mvm/rya/mongodb/MongoDBRyaDAOIT.java | 139 --
.../java/mvm/rya/mongodb/MongoDBRyaDAOTest.java | 137 --
.../SimpleMongoDBStorageStrategyTest.java | 85 -
.../instance/MongoDetailsAdapterTest.java | 296 ---
.../instance/MongoRyaDetailsRepositoryIT.java | 307 ---
.../rya/mongodb/MongoDBQueryEngineTest.java | 124 +
.../org/apache/rya/mongodb/MongoDBRyaDAOIT.java | 139 ++
.../apache/rya/mongodb/MongoDBRyaDAOTest.java | 137 ++
.../SimpleMongoDBStorageStrategyTest.java | 85 +
.../instance/MongoDetailsAdapterTest.java | 296 +++
.../instance/MongoRyaDetailsRepositoryIT.java | 307 +++
.../documentIndex/DocIndexIteratorUtil.java | 31 -
.../DocumentIndexIntersectingIterator.java | 850 -------
.../rya/accumulo/documentIndex/TextColumn.java | 108 -
.../iterators/BindingSetHashJoinIterator.java | 324 ---
.../pcj/iterators/IteratorCombiner.java | 107 -
.../PCJKeyToCrossProductBindingSetIterator.java | 267 ---
.../PCJKeyToJoinBindingSetIterator.java | 199 --
.../client/accumulo/AccumuloBatchUpdatePCJ.java | 244 --
.../api/client/accumulo/AccumuloCommand.java | 64 -
.../accumulo/AccumuloConnectionDetails.java | 83 -
.../api/client/accumulo/AccumuloCreatePCJ.java | 181 --
.../api/client/accumulo/AccumuloDeletePCJ.java | 130 --
.../accumulo/AccumuloGetInstanceDetails.java | 77 -
.../api/client/accumulo/AccumuloInstall.java | 218 --
.../client/accumulo/AccumuloInstanceExists.java | 71 -
.../client/accumulo/AccumuloListInstances.java | 141 --
.../accumulo/AccumuloRyaClientFactory.java | 60 -
.../api/client/accumulo/FluoClientFactory.java | 72 -
.../java/mvm/rya/indexing/DocIdIndexer.java | 47 -
.../rya/indexing/FilterFunctionOptimizer.java | 339 ---
.../java/mvm/rya/indexing/FreeTextIndexer.java | 48 -
.../java/mvm/rya/indexing/GeoConstants.java | 46 -
.../ExternalIndexMatcher.java | 34 -
.../GeneralizedExternalProcessor.java | 726 ------
.../IndexPlanValidator/IndexListPruner.java | 31 -
.../IndexPlanValidator/IndexPlanValidator.java | 210 --
.../IndexPlanValidator/IndexTupleGenerator.java | 33 -
.../IndexedExecutionPlanGenerator.java | 127 --
.../IndexedQueryPlanSelector.java | 32 -
.../ThreshholdPlanSelector.java | 240 --
.../TupleExecutionPlanGenerator.java | 215 --
.../IndexPlanValidator/TupleReArranger.java | 348 ---
.../IndexPlanValidator/TupleValidator.java | 34 -
.../ValidIndexCombinationGenerator.java | 461 ----
.../VarConstantIndexListPruner.java | 174 --
.../java/mvm/rya/indexing/IndexingExpr.java | 94 -
.../rya/indexing/IndexingFunctionRegistry.java | 134 --
.../java/mvm/rya/indexing/IteratorFactory.java | 159 --
.../main/java/mvm/rya/indexing/KeyParts.java | 333 ---
.../src/main/java/mvm/rya/indexing/Md5Hash.java | 44 -
.../java/mvm/rya/indexing/SearchFunction.java | 45 -
.../mvm/rya/indexing/SearchFunctionFactory.java | 71 -
.../mvm/rya/indexing/StatementConstraints.java | 73 -
.../mvm/rya/indexing/StatementSerializer.java | 225 --
.../java/mvm/rya/indexing/TemporalIndexer.java | 166 --
.../java/mvm/rya/indexing/TemporalInstant.java | 83 -
.../rya/indexing/TemporalInstantRfc3339.java | 219 --
.../java/mvm/rya/indexing/TemporalInterval.java | 181 --
.../java/mvm/rya/indexing/TemporalTupleSet.java | 287 ---
.../mvm/rya/indexing/accumulo/ConfigUtils.java | 418 ----
.../accumulo/entity/AccumuloDocIdIndexer.java | 443 ----
.../accumulo/entity/EntityCentricIndex.java | 327 ---
.../entity/EntityLocalityGroupSetter.java | 171 --
.../accumulo/entity/EntityOptimizer.java | 434 ----
.../accumulo/entity/EntityTupleSet.java | 263 ---
.../rya/indexing/accumulo/entity/StarQuery.java | 636 ------
.../freetext/AccumuloFreeTextIndexer.java | 790 -------
.../accumulo/freetext/ColumnPrefixes.java | 120 -
.../accumulo/freetext/FreeTextTupleSet.java | 160 --
.../accumulo/freetext/LuceneTokenizer.java | 57 -
.../accumulo/freetext/SimpleTokenizer.java | 43 -
.../indexing/accumulo/freetext/Tokenizer.java | 31 -
.../freetext/iterators/AndingIterator.java | 563 -----
.../freetext/iterators/BooleanTreeIterator.java | 322 ---
.../accumulo/freetext/query/ASTExpression.java | 63 -
.../accumulo/freetext/query/ASTNodeUtils.java | 210 --
.../accumulo/freetext/query/ASTSimpleNode.java | 917 --------
.../accumulo/freetext/query/ASTTerm.java | 79 -
.../freetext/query/JJTQueryParserState.java | 1024 ---------
.../indexing/accumulo/freetext/query/Node.java | 937 --------
.../accumulo/freetext/query/ParseException.java | 1088 ---------
.../accumulo/freetext/query/QueryParser.java | 1293 -----------
.../accumulo/freetext/query/QueryParser.jj | 176 --
.../accumulo/freetext/query/QueryParser.jjt | 90 -
.../freetext/query/QueryParserConstants.java | 960 --------
.../freetext/query/QueryParserTokenManager.java | 1389 ------------
.../query/QueryParserTreeConstants.java | 920 --------
.../freetext/query/SimpleCharStream.java | 1372 ------------
.../accumulo/freetext/query/SimpleNode.java | 980 --------
.../indexing/accumulo/freetext/query/Token.java | 1032 ---------
.../accumulo/freetext/query/TokenMgrError.java | 1048 ---------
.../temporal/AccumuloTemporalIndexer.java | 945 --------
.../external/PrecomputedJoinIndexer.java | 279 ---
.../external/PrecomputedJoinIndexerConfig.java | 122 -
.../PrecomputedJoinStorageSupplier.java | 80 -
.../PrecomputedJoinUpdaterSupplier.java | 78 -
.../accumulo/AccumuloPcjStorageConfig.java | 58 -
.../accumulo/AccumuloPcjStorageSupplier.java | 78 -
.../indexing/external/fluo/FluoPcjUpdater.java | 89 -
.../external/fluo/FluoPcjUpdaterConfig.java | 119 -
.../external/fluo/FluoPcjUpdaterSupplier.java | 100 -
.../rya/indexing/external/fluo/NoOpUpdater.java | 53 -
.../external/fluo/NoOpUpdaterSupplier.java | 39 -
.../fluo/PcjUpdaterSupplierFactory.java | 57 -
.../external/tupleSet/AccumuloIndexSet.java | 604 -----
.../external/tupleSet/ExternalTupleSet.java | 309 ---
.../external/tupleSet/ParsedQueryUtil.java | 60 -
.../tupleSet/SimpleExternalTupleSet.java | 81 -
.../indexing/mongodb/AbstractMongoIndexer.java | 192 --
.../mongodb/IndexingMongoDBStorageStrategy.java | 57 -
.../mongodb/freetext/MongoFreeTextIndexer.java | 58 -
.../freetext/TextMongoDBStorageStrategy.java | 45 -
.../mongodb/temporal/MongoTemporalIndexer.java | 150 --
.../TemporalMongoDBStorageStrategy.java | 68 -
.../pcj/matching/AbstractPCJMatcher.java | 126 --
.../pcj/matching/AbstractQuerySegment.java | 122 -
.../pcj/matching/FlattenedOptional.java | 331 ---
.../rya/indexing/pcj/matching/JoinSegment.java | 130 --
.../pcj/matching/JoinSegmentPCJMatcher.java | 106 -
.../pcj/matching/OptionalJoinSegment.java | 146 --
.../matching/OptionalJoinSegmentPCJMatcher.java | 142 --
.../rya/indexing/pcj/matching/PCJMatcher.java | 76 -
.../pcj/matching/PCJMatcherFactory.java | 73 -
.../pcj/matching/PCJNodeConsolidator.java | 628 ------
.../rya/indexing/pcj/matching/PCJOptimizer.java | 374 ----
.../pcj/matching/PCJOptimizerUtilities.java | 377 ----
.../pcj/matching/QueryNodesToTupleExpr.java | 194 --
.../rya/indexing/pcj/matching/QuerySegment.java | 83 -
.../pcj/matching/QueryVariableNormalizer.java | 1180 ----------
.../pcj/matching/TopOfQueryFilterRelocator.java | 97 -
.../rya/sail/config/RyaAccumuloSailConfig.java | 165 --
.../rya/sail/config/RyaAccumuloSailFactory.java | 95 -
.../mvm/rya/sail/config/RyaSailFactory.java | 159 --
.../documentIndex/DocIndexIteratorUtil.java | 31 +
.../DocumentIndexIntersectingIterator.java | 850 +++++++
.../rya/accumulo/documentIndex/TextColumn.java | 108 +
.../iterators/BindingSetHashJoinIterator.java | 324 +++
.../pcj/iterators/IteratorCombiner.java | 107 +
.../PCJKeyToCrossProductBindingSetIterator.java | 267 +++
.../PCJKeyToJoinBindingSetIterator.java | 199 ++
.../client/accumulo/AccumuloBatchUpdatePCJ.java | 244 ++
.../api/client/accumulo/AccumuloCommand.java | 64 +
.../accumulo/AccumuloConnectionDetails.java | 83 +
.../api/client/accumulo/AccumuloCreatePCJ.java | 181 ++
.../api/client/accumulo/AccumuloDeletePCJ.java | 130 ++
.../accumulo/AccumuloGetInstanceDetails.java | 77 +
.../api/client/accumulo/AccumuloInstall.java | 218 ++
.../client/accumulo/AccumuloInstanceExists.java | 71 +
.../client/accumulo/AccumuloListInstances.java | 141 ++
.../accumulo/AccumuloRyaClientFactory.java | 60 +
.../api/client/accumulo/FluoClientFactory.java | 72 +
.../org/apache/rya/indexing/DocIdIndexer.java | 47 +
.../rya/indexing/FilterFunctionOptimizer.java | 339 +++
.../apache/rya/indexing/FreeTextIndexer.java | 48 +
.../org/apache/rya/indexing/GeoConstants.java | 46 +
.../ExternalIndexMatcher.java | 34 +
.../GeneralizedExternalProcessor.java | 726 ++++++
.../IndexPlanValidator/IndexListPruner.java | 31 +
.../IndexPlanValidator/IndexPlanValidator.java | 210 ++
.../IndexPlanValidator/IndexTupleGenerator.java | 33 +
.../IndexedExecutionPlanGenerator.java | 127 ++
.../IndexedQueryPlanSelector.java | 32 +
.../ThreshholdPlanSelector.java | 240 ++
.../TupleExecutionPlanGenerator.java | 215 ++
.../IndexPlanValidator/TupleReArranger.java | 348 +++
.../IndexPlanValidator/TupleValidator.java | 34 +
.../ValidIndexCombinationGenerator.java | 461 ++++
.../VarConstantIndexListPruner.java | 174 ++
.../org/apache/rya/indexing/IndexingExpr.java | 94 +
.../rya/indexing/IndexingFunctionRegistry.java | 134 ++
.../apache/rya/indexing/IteratorFactory.java | 159 ++
.../java/org/apache/rya/indexing/KeyParts.java | 333 +++
.../java/org/apache/rya/indexing/Md5Hash.java | 44 +
.../org/apache/rya/indexing/SearchFunction.java | 45 +
.../rya/indexing/SearchFunctionFactory.java | 71 +
.../rya/indexing/StatementConstraints.java | 73 +
.../rya/indexing/StatementSerializer.java | 225 ++
.../apache/rya/indexing/TemporalIndexer.java | 166 ++
.../apache/rya/indexing/TemporalInstant.java | 83 +
.../rya/indexing/TemporalInstantRfc3339.java | 219 ++
.../apache/rya/indexing/TemporalInterval.java | 181 ++
.../apache/rya/indexing/TemporalTupleSet.java | 287 +++
.../rya/indexing/accumulo/ConfigUtils.java | 418 ++++
.../accumulo/entity/AccumuloDocIdIndexer.java | 443 ++++
.../accumulo/entity/EntityCentricIndex.java | 327 +++
.../entity/EntityLocalityGroupSetter.java | 171 ++
.../accumulo/entity/EntityOptimizer.java | 434 ++++
.../accumulo/entity/EntityTupleSet.java | 263 +++
.../rya/indexing/accumulo/entity/StarQuery.java | 636 ++++++
.../freetext/AccumuloFreeTextIndexer.java | 790 +++++++
.../accumulo/freetext/ColumnPrefixes.java | 120 +
.../accumulo/freetext/FreeTextTupleSet.java | 160 ++
.../accumulo/freetext/LuceneTokenizer.java | 57 +
.../accumulo/freetext/SimpleTokenizer.java | 43 +
.../indexing/accumulo/freetext/Tokenizer.java | 31 +
.../freetext/iterators/AndingIterator.java | 563 +++++
.../freetext/iterators/BooleanTreeIterator.java | 322 +++
.../accumulo/freetext/query/ASTExpression.java | 63 +
.../accumulo/freetext/query/ASTNodeUtils.java | 210 ++
.../accumulo/freetext/query/ASTSimpleNode.java | 917 ++++++++
.../accumulo/freetext/query/ASTTerm.java | 79 +
.../freetext/query/JJTQueryParserState.java | 1024 +++++++++
.../indexing/accumulo/freetext/query/Node.java | 937 ++++++++
.../accumulo/freetext/query/ParseException.java | 1088 +++++++++
.../accumulo/freetext/query/QueryParser.java | 1293 +++++++++++
.../accumulo/freetext/query/QueryParser.jj | 176 ++
.../accumulo/freetext/query/QueryParser.jjt | 90 +
.../freetext/query/QueryParserConstants.java | 960 ++++++++
.../freetext/query/QueryParserTokenManager.java | 1389 ++++++++++++
.../query/QueryParserTreeConstants.java | 920 ++++++++
.../freetext/query/SimpleCharStream.java | 1372 ++++++++++++
.../accumulo/freetext/query/SimpleNode.java | 980 ++++++++
.../indexing/accumulo/freetext/query/Token.java | 1032 +++++++++
.../accumulo/freetext/query/TokenMgrError.java | 1048 +++++++++
.../temporal/AccumuloTemporalIndexer.java | 945 ++++++++
.../external/PrecomputedJoinIndexer.java | 279 +++
.../external/PrecomputedJoinIndexerConfig.java | 122 +
.../PrecomputedJoinStorageSupplier.java | 80 +
.../PrecomputedJoinUpdaterSupplier.java | 78 +
.../accumulo/AccumuloPcjStorageConfig.java | 58 +
.../accumulo/AccumuloPcjStorageSupplier.java | 78 +
.../indexing/external/fluo/FluoPcjUpdater.java | 89 +
.../external/fluo/FluoPcjUpdaterConfig.java | 119 +
.../external/fluo/FluoPcjUpdaterSupplier.java | 100 +
.../rya/indexing/external/fluo/NoOpUpdater.java | 53 +
.../external/fluo/NoOpUpdaterSupplier.java | 39 +
.../fluo/PcjUpdaterSupplierFactory.java | 57 +
.../external/tupleSet/AccumuloIndexSet.java | 604 +++++
.../external/tupleSet/ExternalTupleSet.java | 309 +++
.../external/tupleSet/ParsedQueryUtil.java | 60 +
.../tupleSet/SimpleExternalTupleSet.java | 81 +
.../indexing/mongodb/AbstractMongoIndexer.java | 192 ++
.../mongodb/IndexingMongoDBStorageStrategy.java | 57 +
.../mongodb/freetext/MongoFreeTextIndexer.java | 58 +
.../freetext/TextMongoDBStorageStrategy.java | 45 +
.../mongodb/temporal/MongoTemporalIndexer.java | 150 ++
.../TemporalMongoDBStorageStrategy.java | 68 +
.../pcj/matching/AbstractPCJMatcher.java | 126 ++
.../pcj/matching/AbstractQuerySegment.java | 122 +
.../pcj/matching/FlattenedOptional.java | 331 +++
.../rya/indexing/pcj/matching/JoinSegment.java | 130 ++
.../pcj/matching/JoinSegmentPCJMatcher.java | 106 +
.../pcj/matching/OptionalJoinSegment.java | 146 ++
.../matching/OptionalJoinSegmentPCJMatcher.java | 142 ++
.../rya/indexing/pcj/matching/PCJMatcher.java | 76 +
.../pcj/matching/PCJMatcherFactory.java | 73 +
.../pcj/matching/PCJNodeConsolidator.java | 628 ++++++
.../rya/indexing/pcj/matching/PCJOptimizer.java | 374 ++++
.../pcj/matching/PCJOptimizerUtilities.java | 377 ++++
.../pcj/matching/QueryNodesToTupleExpr.java | 194 ++
.../rya/indexing/pcj/matching/QuerySegment.java | 83 +
.../pcj/matching/QueryVariableNormalizer.java | 1180 ++++++++++
.../pcj/matching/TopOfQueryFilterRelocator.java | 97 +
.../rya/sail/config/RyaAccumuloSailConfig.java | 165 ++
.../rya/sail/config/RyaAccumuloSailFactory.java | 95 +
.../apache/rya/sail/config/RyaSailFactory.java | 159 ++
.../DocumentIndexIntersectingIteratorTest.java | 1903 ----------------
.../accumulo/AccumuloBatchUpdatePCJIT.java | 153 --
.../client/accumulo/AccumuloCreatePCJIT.java | 161 --
.../client/accumulo/AccumuloDeletePCJIT.java | 141 --
.../accumulo/AccumuloGetInstanceDetailsIT.java | 142 --
.../api/client/accumulo/AccumuloInstallIT.java | 85 -
.../accumulo/AccumuloInstanceExistsIT.java | 100 -
.../accumulo/AccumuloListInstancesIT.java | 65 -
.../mvm/rya/api/client/accumulo/FluoITBase.java | 312 ---
.../GeneralizedExternalProcessorTest.java | 173 --
.../IndexPlanValidatorTest.java | 752 -------
.../IndexedExecutionPlanGeneratorTest.java | 368 ---
.../ThreshholdPlanSelectorTest.java | 713 ------
.../TupleExecutionPlanGeneratorTest.java | 362 ---
.../IndexPlanValidator/TupleReArrangerTest.java | 140 --
.../ValidIndexCombinationGeneratorTest.java | 533 -----
.../VarConstantIndexListPrunerTest.java | 296 ---
.../accumulo/StatementSerializerTest.java | 106 -
.../accumulo/entity/AccumuloDocIndexerTest.java | 2114 ------------------
.../accumulo/entity/EntityCentricIndexTest.java | 115 -
.../accumulo/entity/EntityOptimizerTest.java | 1357 -----------
.../indexing/accumulo/entity/StarQueryTest.java | 290 ---
.../freetext/AccumuloFreeTextIndexerTest.java | 268 ---
.../freetext/query/QueryParserTest.java | 130 --
.../temporal/AccumuloTemporalIndexerTest.java | 1052 ---------
.../accumulo/temporal/TemporalInstantTest.java | 97 -
.../accumulo/temporal/TemporalIntervalTest.java | 179 --
.../AccumuloConstantPcjIntegrationTest.java | 414 ----
.../external/AccumuloPcjIntegrationTest.java | 1448 ------------
.../indexing/external/PCJOptionalTestIT.java | 324 ---
.../external/PcjIntegrationTestingUtil.java | 413 ----
.../PrecompJoinOptimizerIntegrationTest.java | 505 -----
.../external/PrecompJoinOptimizerTest.java | 429 ----
.../external/PrecompJoinOptimizerTest2.java | 1131 ----------
.../PrecompJoinOptimizerVarToConstTest.java | 430 ----
.../PrecomputedJoinStorageSupplierTest.java | 79 -
.../PrecomputedJoinUpdaterSupplierTest.java | 79 -
.../AccumuloIndexSetColumnVisibilityTest.java | 251 ---
.../external/tupleSet/AccumuloIndexSetTest.java | 678 ------
.../external/tupleSet/ParsedQueryUtilTest.java | 67 -
.../tupleSet/QueryVariableNormalizerTest.java | 965 --------
.../tupleSet/SimpleExternalTupleSetTest.java | 173 --
.../VarConstQueryVariableNormalizerTest.java | 747 -------
.../mongo/MongoFreeTextIndexerTest.java | 207 --
.../mongo/MongoTemporalIndexerTest.java | 693 ------
.../pcj/matching/FlattenedOptionalTest.java | 150 --
.../pcj/matching/JoinSegmentPCJMatcherTest.java | 233 --
.../indexing/pcj/matching/JoinSegmentTest.java | 223 --
.../OptionalJoinSegmentPCJMatcherTest.java | 293 ---
.../pcj/matching/OptionalJoinSegmentTest.java | 141 --
.../pcj/matching/PCJNodeConsolidatorTest.java | 476 ----
.../indexing/pcj/matching/PCJOptimizerTest.java | 538 -----
.../pcj/matching/PCJOptimizerUtilitesTest.java | 113 -
.../sail/config/RyaAccumuloSailFactoryTest.java | 196 --
.../DocumentIndexIntersectingIteratorTest.java | 1903 ++++++++++++++++
.../accumulo/AccumuloBatchUpdatePCJIT.java | 153 ++
.../client/accumulo/AccumuloCreatePCJIT.java | 161 ++
.../client/accumulo/AccumuloDeletePCJIT.java | 141 ++
.../accumulo/AccumuloGetInstanceDetailsIT.java | 142 ++
.../api/client/accumulo/AccumuloInstallIT.java | 85 +
.../accumulo/AccumuloInstanceExistsIT.java | 100 +
.../accumulo/AccumuloListInstancesIT.java | 65 +
.../rya/api/client/accumulo/FluoITBase.java | 312 +++
.../GeneralizedExternalProcessorTest.java | 173 ++
.../IndexPlanValidatorTest.java | 752 +++++++
.../IndexedExecutionPlanGeneratorTest.java | 368 +++
.../ThreshholdPlanSelectorTest.java | 713 ++++++
.../TupleExecutionPlanGeneratorTest.java | 362 +++
.../IndexPlanValidator/TupleReArrangerTest.java | 140 ++
.../ValidIndexCombinationGeneratorTest.java | 533 +++++
.../VarConstantIndexListPrunerTest.java | 296 +++
.../accumulo/StatementSerializerTest.java | 106 +
.../accumulo/entity/AccumuloDocIndexerTest.java | 2114 ++++++++++++++++++
.../accumulo/entity/EntityCentricIndexTest.java | 115 +
.../accumulo/entity/EntityOptimizerTest.java | 1357 +++++++++++
.../indexing/accumulo/entity/StarQueryTest.java | 290 +++
.../freetext/AccumuloFreeTextIndexerTest.java | 268 +++
.../freetext/query/QueryParserTest.java | 130 ++
.../temporal/AccumuloTemporalIndexerTest.java | 1052 +++++++++
.../accumulo/temporal/TemporalInstantTest.java | 97 +
.../accumulo/temporal/TemporalIntervalTest.java | 179 ++
.../AccumuloConstantPcjIntegrationTest.java | 414 ++++
.../external/AccumuloPcjIntegrationTest.java | 1448 ++++++++++++
.../indexing/external/PCJOptionalTestIT.java | 324 +++
.../external/PcjIntegrationTestingUtil.java | 413 ++++
.../PrecompJoinOptimizerIntegrationTest.java | 505 +++++
.../external/PrecompJoinOptimizerTest.java | 429 ++++
.../external/PrecompJoinOptimizerTest2.java | 1131 ++++++++++
.../PrecompJoinOptimizerVarToConstTest.java | 430 ++++
.../PrecomputedJoinStorageSupplierTest.java | 79 +
.../PrecomputedJoinUpdaterSupplierTest.java | 79 +
.../AccumuloIndexSetColumnVisibilityTest.java | 251 +++
.../external/tupleSet/AccumuloIndexSetTest.java | 678 ++++++
.../external/tupleSet/ParsedQueryUtilTest.java | 67 +
.../tupleSet/QueryVariableNormalizerTest.java | 965 ++++++++
.../tupleSet/SimpleExternalTupleSetTest.java | 173 ++
.../VarConstQueryVariableNormalizerTest.java | 747 +++++++
.../mongo/MongoFreeTextIndexerTest.java | 207 ++
.../mongo/MongoTemporalIndexerTest.java | 693 ++++++
.../pcj/matching/FlattenedOptionalTest.java | 150 ++
.../pcj/matching/JoinSegmentPCJMatcherTest.java | 233 ++
.../indexing/pcj/matching/JoinSegmentTest.java | 223 ++
.../OptionalJoinSegmentPCJMatcherTest.java | 293 +++
.../pcj/matching/OptionalJoinSegmentTest.java | 141 ++
.../pcj/matching/PCJNodeConsolidatorTest.java | 476 ++++
.../indexing/pcj/matching/PCJOptimizerTest.java | 538 +++++
.../pcj/matching/PCJOptimizerUtilitesTest.java | 113 +
.../sail/config/RyaAccumuloSailFactoryTest.java | 196 ++
.../java/mvm/rya/shell/RyaAdminCommands.java | 278 ---
.../java/mvm/rya/shell/RyaBannerProvider.java | 97 -
.../mvm/rya/shell/RyaConnectionCommands.java | 167 --
.../java/mvm/rya/shell/RyaPromptProvider.java | 62 -
.../java/mvm/rya/shell/SharedShellState.java | 338 ---
.../mvm/rya/shell/util/ConnectorFactory.java | 66 -
.../java/mvm/rya/shell/util/InstallPrompt.java | 139 --
.../rya/shell/util/InstanceNamesFormatter.java | 77 -
.../java/mvm/rya/shell/util/JLinePrompt.java | 200 --
.../java/mvm/rya/shell/util/PasswordPrompt.java | 71 -
.../mvm/rya/shell/util/RyaDetailsFormatter.java | 117 -
.../java/mvm/rya/shell/util/SparqlPrompt.java | 55 -
.../org/apache/rya/shell/RyaAdminCommands.java | 278 +++
.../org/apache/rya/shell/RyaBannerProvider.java | 97 +
.../apache/rya/shell/RyaConnectionCommands.java | 167 ++
.../org/apache/rya/shell/RyaPromptProvider.java | 62 +
.../org/apache/rya/shell/SharedShellState.java | 338 +++
.../apache/rya/shell/util/ConnectorFactory.java | 66 +
.../apache/rya/shell/util/InstallPrompt.java | 139 ++
.../rya/shell/util/InstanceNamesFormatter.java | 77 +
.../org/apache/rya/shell/util/JLinePrompt.java | 200 ++
.../apache/rya/shell/util/PasswordPrompt.java | 71 +
.../rya/shell/util/RyaDetailsFormatter.java | 117 +
.../org/apache/rya/shell/util/SparqlPrompt.java | 55 +
.../mvm/rya/shell/RyaAdminCommandsTest.java | 294 ---
.../mvm/rya/shell/RyaConnectionCommandsIT.java | 269 ---
.../mvm/rya/shell/RyaPromptProviderTest.java | 80 -
.../test/java/mvm/rya/shell/RyaShellITBase.java | 103 -
.../mvm/rya/shell/SharedShellStateTest.java | 167 --
.../mvm/rya/shell/util/ConnectorFactoryIT.java | 57 -
.../shell/util/InstanceNamesFormatterTest.java | 81 -
.../rya/shell/util/RyaDetailsFormatterTest.java | 109 -
.../apache/rya/shell/RyaAdminCommandsTest.java | 294 +++
.../rya/shell/RyaConnectionCommandsIT.java | 269 +++
.../apache/rya/shell/RyaPromptProviderTest.java | 80 +
.../org/apache/rya/shell/RyaShellITBase.java | 103 +
.../apache/rya/shell/SharedShellStateTest.java | 167 ++
.../rya/shell/util/ConnectorFactoryIT.java | 57 +
.../shell/util/InstanceNamesFormatterTest.java | 81 +
.../rya/shell/util/RyaDetailsFormatterTest.java | 109 +
.../GeoEnabledFilterFunctionOptimizer.java | 353 ---
.../main/java/mvm/rya/indexing/GeoIndexer.java | 185 --
.../mvm/rya/indexing/GeoRyaSailFactory.java | 146 --
.../mvm/rya/indexing/OptionalConfigUtils.java | 141 --
.../accumulo/geo/GeoMesaGeoIndexer.java | 518 -----
.../indexing/accumulo/geo/GeoParseUtils.java | 119 -
.../rya/indexing/accumulo/geo/GeoTupleSet.java | 363 ---
.../mongodb/geo/GeoMongoDBStorageStrategy.java | 143 --
.../indexing/mongodb/geo/MongoGeoIndexer.java | 112 -
.../indexing/mongodb/geo/MongoGeoTupleSet.java | 360 ---
.../GeoEnabledFilterFunctionOptimizer.java | 353 +++
.../org/apache/rya/indexing/GeoIndexer.java | 185 ++
.../apache/rya/indexing/GeoRyaSailFactory.java | 146 ++
.../rya/indexing/OptionalConfigUtils.java | 141 ++
.../accumulo/geo/GeoMesaGeoIndexer.java | 518 +++++
.../indexing/accumulo/geo/GeoParseUtils.java | 119 +
.../rya/indexing/accumulo/geo/GeoTupleSet.java | 363 +++
.../mongodb/geo/GeoMongoDBStorageStrategy.java | 143 ++
.../indexing/mongodb/geo/MongoGeoIndexer.java | 112 +
.../indexing/mongodb/geo/MongoGeoTupleSet.java | 360 +++
.../indexing/accumulo/geo/GeoIndexerSfTest.java | 514 -----
.../indexing/accumulo/geo/GeoIndexerTest.java | 401 ----
.../indexing/mongo/MongoGeoIndexerSfTest.java | 304 ---
.../rya/indexing/mongo/MongoGeoIndexerTest.java | 396 ----
.../indexing/accumulo/geo/GeoIndexerSfTest.java | 514 +++++
.../indexing/accumulo/geo/GeoIndexerTest.java | 401 ++++
.../indexing/mongo/MongoGeoIndexerSfTest.java | 304 +++
.../rya/indexing/mongo/MongoGeoIndexerTest.java | 396 ++++
.../AbstractDualInstanceAccumuloMRTool.java | 64 -
.../mvm/rya/accumulo/mr/merge/CopyTool.java | 1016 ---------
.../mvm/rya/accumulo/mr/merge/MergeTool.java | 554 -----
.../accumulo/mr/merge/common/InstanceType.java | 56 -
.../mr/merge/gui/DateTimePickerDialog.java | 173 --
.../merge/mappers/AccumuloCopyToolMapper.java | 52 -
.../mr/merge/mappers/AccumuloRyaRuleMapper.java | 69 -
.../mr/merge/mappers/BaseCopyToolMapper.java | 260 ---
.../mr/merge/mappers/BaseRuleMapper.java | 222 --
.../mr/merge/mappers/FileCopyToolMapper.java | 81 -
.../mr/merge/mappers/MergeToolMapper.java | 575 -----
.../mr/merge/mappers/RowRuleMapper.java | 200 --
.../mr/merge/reducers/MultipleFileReducer.java | 64 -
.../mr/merge/util/AccumuloInstanceDriver.java | 577 -----
.../mr/merge/util/AccumuloQueryRuleset.java | 203 --
.../mr/merge/util/AccumuloRyaUtils.java | 667 ------
.../rya/accumulo/mr/merge/util/CopyRule.java | 383 ----
.../rya/accumulo/mr/merge/util/GroupedRow.java | 182 --
.../accumulo/mr/merge/util/QueryRuleset.java | 549 -----
.../rya/accumulo/mr/merge/util/TimeUtils.java | 349 ---
.../accumulo/mr/merge/util/ToolConfigUtils.java | 136 --
.../AbstractDualInstanceAccumuloMRTool.java | 64 +
.../apache/rya/accumulo/mr/merge/CopyTool.java | 1016 +++++++++
.../apache/rya/accumulo/mr/merge/MergeTool.java | 554 +++++
.../accumulo/mr/merge/common/InstanceType.java | 56 +
.../mr/merge/gui/DateTimePickerDialog.java | 173 ++
.../merge/mappers/AccumuloCopyToolMapper.java | 52 +
.../mr/merge/mappers/AccumuloRyaRuleMapper.java | 69 +
.../mr/merge/mappers/BaseCopyToolMapper.java | 260 +++
.../mr/merge/mappers/BaseRuleMapper.java | 222 ++
.../mr/merge/mappers/FileCopyToolMapper.java | 81 +
.../mr/merge/mappers/MergeToolMapper.java | 575 +++++
.../mr/merge/mappers/RowRuleMapper.java | 200 ++
.../mr/merge/reducers/MultipleFileReducer.java | 64 +
.../mr/merge/util/AccumuloInstanceDriver.java | 577 +++++
.../mr/merge/util/AccumuloQueryRuleset.java | 203 ++
.../mr/merge/util/AccumuloRyaUtils.java | 667 ++++++
.../rya/accumulo/mr/merge/util/CopyRule.java | 383 ++++
.../rya/accumulo/mr/merge/util/GroupedRow.java | 182 ++
.../accumulo/mr/merge/util/QueryRuleset.java | 549 +++++
.../rya/accumulo/mr/merge/util/TimeUtils.java | 349 +++
.../accumulo/mr/merge/util/ToolConfigUtils.java | 136 ++
.../mvm/rya/accumulo/mr/merge/CopyToolTest.java | 359 ---
.../rya/accumulo/mr/merge/MergeToolTest.java | 495 ----
.../rya/accumulo/mr/merge/RulesetCopyIT.java | 561 -----
.../accumulo/mr/merge/demo/CopyToolDemo.java | 314 ---
.../accumulo/mr/merge/demo/MergeToolDemo.java | 323 ---
.../mr/merge/demo/util/DemoUtilities.java | 128 --
.../driver/AccumuloDualInstanceDriver.java | 612 -----
.../merge/driver/MiniAccumuloClusterDriver.java | 181 --
.../rya/accumulo/mr/merge/util/TestUtils.java | 250 ---
.../rya/accumulo/mr/merge/CopyToolTest.java | 359 +++
.../rya/accumulo/mr/merge/MergeToolTest.java | 495 ++++
.../rya/accumulo/mr/merge/RulesetCopyIT.java | 561 +++++
.../accumulo/mr/merge/demo/CopyToolDemo.java | 314 +++
.../accumulo/mr/merge/demo/MergeToolDemo.java | 323 +++
.../mr/merge/demo/util/DemoUtilities.java | 128 ++
.../driver/AccumuloDualInstanceDriver.java | 612 +++++
.../merge/driver/MiniAccumuloClusterDriver.java | 181 ++
.../rya/accumulo/mr/merge/util/TestUtils.java | 250 +++
.../mvm/rya/prospector/domain/IndexEntry.groovy | 76 -
.../domain/IntermediateProspect.groovy | 70 -
.../rya/prospector/domain/TripleValueType.java | 26 -
.../mvm/rya/prospector/mr/Prospector.groovy | 108 -
.../rya/prospector/mr/ProspectorCombiner.groovy | 61 -
.../rya/prospector/mr/ProspectorMapper.groovy | 75 -
.../rya/prospector/mr/ProspectorReducer.groovy | 57 -
.../rya/prospector/plans/IndexWorkPlan.groovy | 51 -
.../plans/IndexWorkPlanManager.groovy | 29 -
.../rya/prospector/plans/impl/CountPlan.groovy | 220 --
.../ServicesBackedIndexWorkPlanManager.groovy | 38 -
.../prospector/service/ProspectorService.groovy | 126 --
.../ProspectorServiceEvalStatsDAO.groovy | 122 -
.../mvm/rya/prospector/utils/CustomEntry.groovy | 52 -
.../prospector/utils/ProspectorConstants.groovy | 41 -
.../rya/prospector/utils/ProspectorUtils.groovy | 138 --
.../rya/prospector/domain/IndexEntry.groovy | 76 +
.../domain/IntermediateProspect.groovy | 70 +
.../rya/prospector/domain/TripleValueType.java | 26 +
.../apache/rya/prospector/mr/Prospector.groovy | 108 +
.../rya/prospector/mr/ProspectorCombiner.groovy | 61 +
.../rya/prospector/mr/ProspectorMapper.groovy | 75 +
.../rya/prospector/mr/ProspectorReducer.groovy | 57 +
.../rya/prospector/plans/IndexWorkPlan.groovy | 51 +
.../plans/IndexWorkPlanManager.groovy | 29 +
.../rya/prospector/plans/impl/CountPlan.groovy | 220 ++
.../ServicesBackedIndexWorkPlanManager.groovy | 38 +
.../prospector/service/ProspectorService.groovy | 126 ++
.../ProspectorServiceEvalStatsDAO.groovy | 122 +
.../rya/prospector/utils/CustomEntry.groovy | 52 +
.../prospector/utils/ProspectorConstants.groovy | 41 +
.../rya/prospector/utils/ProspectorUtils.groovy | 138 ++
.../joinselect/AccumuloSelectivityEvalDAO.java | 640 ------
.../mvm/rya/joinselect/CardinalityCalcUtil.java | 267 ---
.../mvm/rya/joinselect/mr/FullTableSize.java | 129 --
.../rya/joinselect/mr/JoinSelectAggregate.java | 272 ---
.../mvm/rya/joinselect/mr/JoinSelectDriver.java | 60 -
.../joinselect/mr/JoinSelectProspectOutput.java | 124 -
.../joinselect/mr/JoinSelectSpoTableOutput.java | 126 --
.../joinselect/mr/JoinSelectStatisticsSum.java | 220 --
.../mvm/rya/joinselect/mr/utils/CardList.java | 209 --
.../joinselect/mr/utils/CardinalityType.java | 149 --
.../rya/joinselect/mr/utils/CompositeType.java | 122 -
.../mr/utils/JoinSelectConstants.java | 46 -
.../mr/utils/JoinSelectStatsUtil.java | 183 --
.../mvm/rya/joinselect/mr/utils/TripleCard.java | 145 --
.../rya/joinselect/mr/utils/TripleEntry.java | 180 --
.../joinselect/AccumuloSelectivityEvalDAO.java | 640 ++++++
.../rya/joinselect/CardinalityCalcUtil.java | 267 +++
.../apache/rya/joinselect/mr/FullTableSize.java | 129 ++
.../rya/joinselect/mr/JoinSelectAggregate.java | 272 +++
.../rya/joinselect/mr/JoinSelectDriver.java | 60 +
.../joinselect/mr/JoinSelectProspectOutput.java | 124 +
.../joinselect/mr/JoinSelectSpoTableOutput.java | 126 ++
.../joinselect/mr/JoinSelectStatisticsSum.java | 220 ++
.../rya/joinselect/mr/utils/CardList.java | 209 ++
.../joinselect/mr/utils/CardinalityType.java | 149 ++
.../rya/joinselect/mr/utils/CompositeType.java | 122 +
.../mr/utils/JoinSelectConstants.java | 46 +
.../mr/utils/JoinSelectStatsUtil.java | 183 ++
.../rya/joinselect/mr/utils/TripleCard.java | 145 ++
.../rya/joinselect/mr/utils/TripleEntry.java | 180 ++
.../mvm.rya.prospector.plans.IndexWorkPlan | 1 -
...rg.apache.rya.prospector.plans.IndexWorkPlan | 1 +
.../mvm/rya/prospector/mr/ProspectorTest.groovy | 178 --
.../ProspectorServiceEvalStatsDAOTest.groovy | 182 --
.../rya/prospector/mr/ProspectorTest.groovy | 178 ++
.../ProspectorServiceEvalStatsDAOTest.groovy | 182 ++
.../AccumuloSelectivityEvalDAOTest.java | 592 -----
.../mr/CardinalityIdentityReducerTest.java | 141 --
.../joinselect/mr/CardinalityMapperTest.java | 76 -
.../rya/joinselect/mr/FullTableSizeTest.java | 64 -
.../mvm/rya/joinselect/mr/JoinReducerTest.java | 124 -
.../rya/joinselect/mr/JoinSelectMapperTest.java | 94 -
.../mr/JoinSelectProspectOutputTest.java | 89 -
.../mr/JoinSelectStatisticsSumTest.java | 60 -
.../joinselect/mr/JoinSelectStatisticsTest.java | 872 --------
.../AccumuloSelectivityEvalDAOTest.java | 592 +++++
.../mr/CardinalityIdentityReducerTest.java | 141 ++
.../joinselect/mr/CardinalityMapperTest.java | 76 +
.../rya/joinselect/mr/FullTableSizeTest.java | 64 +
.../rya/joinselect/mr/JoinReducerTest.java | 124 +
.../rya/joinselect/mr/JoinSelectMapperTest.java | 94 +
.../mr/JoinSelectProspectOutputTest.java | 89 +
.../mr/JoinSelectStatisticsSumTest.java | 60 +
.../joinselect/mr/JoinSelectStatisticsTest.java | 872 ++++++++
.../mvm/rya/reasoning/AbstractReasoner.java | 233 --
.../main/java/mvm/rya/reasoning/Derivation.java | 324 ---
.../src/main/java/mvm/rya/reasoning/Fact.java | 514 -----
.../java/mvm/rya/reasoning/LocalReasoner.java | 667 ------
.../src/main/java/mvm/rya/reasoning/OWL2.java | 38 -
.../main/java/mvm/rya/reasoning/OwlClass.java | 489 ----
.../java/mvm/rya/reasoning/OwlProperty.java | 309 ---
.../main/java/mvm/rya/reasoning/OwlRule.java | 78 -
.../src/main/java/mvm/rya/reasoning/Schema.java | 538 -----
.../java/mvm/rya/reasoning/TypeReasoner.java | 234 --
.../rya/reasoning/mr/AbstractReasoningTool.java | 492 ----
.../mvm/rya/reasoning/mr/ConformanceTest.java | 436 ----
.../rya/reasoning/mr/DuplicateElimination.java | 225 --
.../java/mvm/rya/reasoning/mr/ForwardChain.java | 278 ---
.../mvm/rya/reasoning/mr/MRReasoningUtils.java | 336 ---
.../java/mvm/rya/reasoning/mr/OutputTool.java | 110 -
.../mvm/rya/reasoning/mr/ReasoningDriver.java | 154 --
.../mvm/rya/reasoning/mr/ResourceWritable.java | 145 --
.../mvm/rya/reasoning/mr/RunStatistics.java | 253 ---
.../java/mvm/rya/reasoning/mr/SchemaFilter.java | 165 --
.../mvm/rya/reasoning/mr/SchemaWritable.java | 76 -
.../apache/rya/reasoning/AbstractReasoner.java | 233 ++
.../org/apache/rya/reasoning/Derivation.java | 324 +++
.../java/org/apache/rya/reasoning/Fact.java | 514 +++++
.../org/apache/rya/reasoning/LocalReasoner.java | 667 ++++++
.../java/org/apache/rya/reasoning/OWL2.java | 38 +
.../java/org/apache/rya/reasoning/OwlClass.java | 489 ++++
.../org/apache/rya/reasoning/OwlProperty.java | 309 +++
.../java/org/apache/rya/reasoning/OwlRule.java | 78 +
.../java/org/apache/rya/reasoning/Schema.java | 538 +++++
.../org/apache/rya/reasoning/TypeReasoner.java | 234 ++
.../rya/reasoning/mr/AbstractReasoningTool.java | 492 ++++
.../rya/reasoning/mr/ConformanceTest.java | 436 ++++
.../rya/reasoning/mr/DuplicateElimination.java | 225 ++
.../apache/rya/reasoning/mr/ForwardChain.java | 278 +++
.../rya/reasoning/mr/MRReasoningUtils.java | 336 +++
.../org/apache/rya/reasoning/mr/OutputTool.java | 110 +
.../rya/reasoning/mr/ReasoningDriver.java | 154 ++
.../rya/reasoning/mr/ResourceWritable.java | 145 ++
.../apache/rya/reasoning/mr/RunStatistics.java | 253 +++
.../apache/rya/reasoning/mr/SchemaFilter.java | 165 ++
.../apache/rya/reasoning/mr/SchemaWritable.java | 76 +
.../mvm/rya/reasoning/LocalReasonerTest.java | 512 -----
.../mvm/rya/reasoning/ReasonerFactTest.java | 277 ---
.../mvm/rya/reasoning/SchemaReasoningTest.java | 330 ---
.../test/java/mvm/rya/reasoning/SchemaTest.java | 284 ---
.../test/java/mvm/rya/reasoning/TestUtils.java | 79 -
.../reasoning/mr/DuplicateEliminationTest.java | 200 --
.../mvm/rya/reasoning/mr/ForwardChainTest.java | 250 ---
.../apache/rya/reasoning/LocalReasonerTest.java | 512 +++++
.../apache/rya/reasoning/ReasonerFactTest.java | 277 +++
.../rya/reasoning/SchemaReasoningTest.java | 330 +++
.../org/apache/rya/reasoning/SchemaTest.java | 284 +++
.../org/apache/rya/reasoning/TestUtils.java | 79 +
.../reasoning/mr/DuplicateEliminationTest.java | 200 ++
.../rya/reasoning/mr/ForwardChainTest.java | 250 +++
.../rya/accumulo/mr/AbstractAccumuloMRTool.java | 304 ---
.../mr/AccumuloHDFSFileInputFormat.java | 161 --
.../main/java/mvm/rya/accumulo/mr/MRUtils.java | 317 ---
.../mvm/rya/accumulo/mr/RdfFileInputFormat.java | 443 ----
.../mvm/rya/accumulo/mr/RyaInputFormat.java | 130 --
.../mvm/rya/accumulo/mr/RyaOutputFormat.java | 562 -----
.../rya/accumulo/mr/RyaStatementWritable.java | 256 ---
.../accumulo/mr/examples/TextOutputExample.java | 196 --
.../accumulo/mr/tools/AccumuloRdfCountTool.java | 258 ---
.../rya/accumulo/mr/tools/RdfFileInputTool.java | 91 -
.../rya/accumulo/mr/tools/Upgrade322Tool.java | 241 --
.../rya/accumulo/mr/AbstractAccumuloMRTool.java | 304 +++
.../mr/AccumuloHDFSFileInputFormat.java | 161 ++
.../org/apache/rya/accumulo/mr/MRUtils.java | 317 +++
.../rya/accumulo/mr/RdfFileInputFormat.java | 443 ++++
.../apache/rya/accumulo/mr/RyaInputFormat.java | 130 ++
.../apache/rya/accumulo/mr/RyaOutputFormat.java | 562 +++++
.../rya/accumulo/mr/RyaStatementWritable.java | 256 +++
.../accumulo/mr/examples/TextOutputExample.java | 196 ++
.../accumulo/mr/tools/AccumuloRdfCountTool.java | 258 +++
.../rya/accumulo/mr/tools/RdfFileInputTool.java | 91 +
.../rya/accumulo/mr/tools/Upgrade322Tool.java | 241 ++
.../rya/accumulo/mr/RdfFileInputFormatTest.java | 180 --
.../mvm/rya/accumulo/mr/RyaInputFormatTest.java | 156 --
.../rya/accumulo/mr/RyaOutputFormatTest.java | 288 ---
.../accumulo/mr/RyaStatementWritableTest.java | 146 --
.../java/mvm/rya/accumulo/mr/TestUtils.java | 113 -
.../mr/tools/AccumuloRdfCountToolTest.java | 283 ---
.../accumulo/mr/tools/RdfFileInputToolTest.java | 131 --
.../accumulo/mr/tools/Upgrade322ToolTest.java | 275 ---
.../tools/UpgradeObjectSerializationTest.java | 119 -
.../rya/accumulo/mr/RdfFileInputFormatTest.java | 180 ++
.../rya/accumulo/mr/RyaInputFormatTest.java | 156 ++
.../rya/accumulo/mr/RyaOutputFormatTest.java | 288 +++
.../accumulo/mr/RyaStatementWritableTest.java | 146 ++
.../org/apache/rya/accumulo/mr/TestUtils.java | 113 +
.../mr/tools/AccumuloRdfCountToolTest.java | 283 +++
.../accumulo/mr/tools/RdfFileInputToolTest.java | 131 ++
.../accumulo/mr/tools/Upgrade322ToolTest.java | 275 +++
.../tools/UpgradeObjectSerializationTest.java | 119 +
.../mvm/rya/alx/command/AbstractRyaCommand.java | 58 -
.../alx/command/GetStatementsRyaCommand.java | 80 -
.../mvm/rya/alx/command/InfoRyaCommand.java | 46 -
.../rya/alx/command/AbstractRyaCommand.java | 58 +
.../alx/command/GetStatementsRyaCommand.java | 80 +
.../apache/rya/alx/command/InfoRyaCommand.java | 46 +
.../mvm/rya/alx/util/ConfigurationFactory.java | 53 -
.../rya/alx/util/ConfigurationFactory.java | 53 +
.../mvm/rya/camel/cbsail/CbSailComponent.java | 59 -
.../mvm/rya/camel/cbsail/CbSailEndpoint.java | 119 -
.../mvm/rya/camel/cbsail/CbSailProducer.java | 175 --
.../rya/camel/cbsail/CbSailComponent.java | 59 +
.../apache/rya/camel/cbsail/CbSailEndpoint.java | 119 +
.../apache/rya/camel/cbsail/CbSailProducer.java | 175 ++
.../rya/camel/cbsail/CbSailIntegrationTest.java | 117 -
.../mvm/rya/camel/cbsail/CbSailPojoMain.java | 45 -
.../java/mvm/rya/camel/cbsail/CbSailTest.java | 205 --
.../rya/camel/cbsail/CbSailIntegrationTest.java | 117 +
.../apache/rya/camel/cbsail/CbSailPojoMain.java | 45 +
.../org/apache/rya/camel/cbsail/CbSailTest.java | 205 ++
.../mvm/rya/accumulo/pig/AccumuloStorage.java | 383 ----
.../mvm/rya/accumulo/pig/IndexWritingTool.java | 348 ---
.../rya/accumulo/pig/SparqlQueryPigEngine.java | 268 ---
.../pig/SparqlToPigTransformVisitor.java | 345 ---
.../accumulo/pig/StatementPatternStorage.java | 307 ---
.../pig/optimizer/SimilarVarJoinOptimizer.java | 210 --
.../rya/accumulo/pig/AccumuloStorage.java | 383 ++++
.../rya/accumulo/pig/IndexWritingTool.java | 348 +++
.../rya/accumulo/pig/SparqlQueryPigEngine.java | 268 +++
.../pig/SparqlToPigTransformVisitor.java | 345 +++
.../accumulo/pig/StatementPatternStorage.java | 307 +++
.../pig/optimizer/SimilarVarJoinOptimizer.java | 210 ++
.../rya/accumulo/pig/AccumuloStorageTest.java | 284 ---
.../rya/accumulo/pig/IndexWritingToolTest.java | 326 ---
.../accumulo/pig/SparqlQueryPigEngineTest.java | 76 -
.../pig/SparqlToPigTransformVisitorTest.java | 402 ----
.../pig/StatementPatternStorageTest.java | 185 --
.../rya/accumulo/pig/AccumuloStorageTest.java | 284 +++
.../rya/accumulo/pig/IndexWritingToolTest.java | 326 +++
.../accumulo/pig/SparqlQueryPigEngineTest.java | 76 +
.../pig/SparqlToPigTransformVisitorTest.java | 402 ++++
.../pig/StatementPatternStorageTest.java | 185 ++
.../rya/rdftriplestore/RdfCloudTripleStore.java | 173 --
.../RdfCloudTripleStoreConnection.java | 625 ------
.../rya/rdftriplestore/RyaSailRepository.java | 53 -
.../RyaSailRepositoryConnection.java | 109 -
.../evaluation/ExternalBatchingIterator.java | 33 -
.../ExternalMultipleBindingSetsIterator.java | 109 -
.../evaluation/FilterRangeVisitor.java | 97 -
.../evaluation/MultipleBindingSetsIterator.java | 108 -
.../ParallelEvaluationStrategyImpl.java | 281 ---
.../evaluation/ParallelJoinIterator.java | 139 --
.../evaluation/PushJoinDownVisitor.java | 57 -
.../evaluation/QueryJoinOptimizer.java | 284 ---
.../evaluation/QueryJoinSelectOptimizer.java | 260 ---
...RdfCloudTripleStoreEvaluationStatistics.java | 281 ---
...pleStoreSelectivityEvaluationStatistics.java | 128 --
.../evaluation/ReorderJoinVisitor.java | 70 -
.../evaluation/SeparateFilterJoinsVisitor.java | 55 -
.../inference/AbstractInferVisitor.java | 108 -
.../rdftriplestore/inference/DoNotExpandSP.java | 51 -
.../inference/InferConstants.java | 34 -
.../rya/rdftriplestore/inference/InferJoin.java | 50 -
.../rdftriplestore/inference/InferUnion.java | 48 -
.../inference/InferenceEngine.java | 586 -----
.../inference/InferenceEngineException.java | 43 -
.../inference/InverseOfVisitor.java | 80 -
.../rdftriplestore/inference/InverseURI.java | 80 -
.../inference/PropertyChainVisitor.java | 114 -
.../rdftriplestore/inference/SameAsVisitor.java | 187 --
.../inference/SubClassOfVisitor.java | 105 -
.../inference/SubPropertyOfVisitor.java | 118 -
.../inference/SymmetricPropertyVisitor.java | 78 -
.../inference/TransitivePropertyVisitor.java | 69 -
.../namespace/NamespaceManager.java | 167 --
.../utils/CombineContextsRdfInserter.java | 165 --
.../rdftriplestore/utils/DefaultStatistics.java | 58 -
.../utils/FixedStatementPattern.java | 59 -
.../utils/TransitivePropertySP.java | 52 -
.../rya/rdftriplestore/RdfCloudTripleStore.java | 173 ++
.../RdfCloudTripleStoreConnection.java | 625 ++++++
.../rya/rdftriplestore/RyaSailRepository.java | 53 +
.../RyaSailRepositoryConnection.java | 109 +
.../evaluation/ExternalBatchingIterator.java | 33 +
.../ExternalMultipleBindingSetsIterator.java | 109 +
.../evaluation/FilterRangeVisitor.java | 97 +
.../evaluation/MultipleBindingSetsIterator.java | 108 +
.../ParallelEvaluationStrategyImpl.java | 281 +++
.../evaluation/ParallelJoinIterator.java | 139 ++
.../evaluation/PushJoinDownVisitor.java | 57 +
.../evaluation/QueryJoinOptimizer.java | 284 +++
.../evaluation/QueryJoinSelectOptimizer.java | 260 +++
...RdfCloudTripleStoreEvaluationStatistics.java | 281 +++
...pleStoreSelectivityEvaluationStatistics.java | 128 ++
.../evaluation/ReorderJoinVisitor.java | 70 +
.../evaluation/SeparateFilterJoinsVisitor.java | 55 +
.../inference/AbstractInferVisitor.java | 108 +
.../rdftriplestore/inference/DoNotExpandSP.java | 51 +
.../inference/InferConstants.java | 34 +
.../rya/rdftriplestore/inference/InferJoin.java | 50 +
.../rdftriplestore/inference/InferUnion.java | 48 +
.../inference/InferenceEngine.java | 586 +++++
.../inference/InferenceEngineException.java | 43 +
.../inference/InverseOfVisitor.java | 80 +
.../rdftriplestore/inference/InverseURI.java | 80 +
.../inference/PropertyChainVisitor.java | 114 +
.../rdftriplestore/inference/SameAsVisitor.java | 187 ++
.../inference/SubClassOfVisitor.java | 105 +
.../inference/SubPropertyOfVisitor.java | 118 +
.../inference/SymmetricPropertyVisitor.java | 78 +
.../inference/TransitivePropertyVisitor.java | 69 +
.../namespace/NamespaceManager.java | 167 ++
.../utils/CombineContextsRdfInserter.java | 165 ++
.../rdftriplestore/utils/DefaultStatistics.java | 58 +
.../utils/FixedStatementPattern.java | 59 +
.../utils/TransitivePropertySP.java | 52 +
.../java/mvm/rya/ArbitraryLengthQueryTest.java | 500 -----
sail/src/test/java/mvm/rya/HashJoinTest.java | 374 ----
.../test/java/mvm/rya/IterativeJoinTest.java | 365 ---
sail/src/test/java/mvm/rya/MergeJoinTest.java | 370 ---
.../rya/RdfCloudTripleStoreConnectionTest.java | 1472 ------------
.../java/mvm/rya/RdfCloudTripleStoreTest.java | 699 ------
.../mvm/rya/RdfCloudTripleStoreUtilsTest.java | 86 -
.../QueryJoinSelectOptimizerTest.java | 992 --------
...toreSelectivityEvaluationStatisticsTest.java | 304 ---
.../inference/PropertyChainTest.java | 140 --
.../rya/triplestore/inference/SameAsTest.java | 115 -
.../apache/rya/ArbitraryLengthQueryTest.java | 500 +++++
.../test/java/org/apache/rya/HashJoinTest.java | 374 ++++
.../java/org/apache/rya/IterativeJoinTest.java | 365 +++
.../test/java/org/apache/rya/MergeJoinTest.java | 370 +++
.../rya/RdfCloudTripleStoreConnectionTest.java | 1472 ++++++++++++
.../org/apache/rya/RdfCloudTripleStoreTest.java | 699 ++++++
.../rya/RdfCloudTripleStoreUtilsTest.java | 86 +
.../QueryJoinSelectOptimizerTest.java | 992 ++++++++
...toreSelectivityEvaluationStatisticsTest.java | 304 +++
.../inference/PropertyChainTest.java | 140 ++
.../rya/triplestore/inference/SameAsTest.java | 115 +
.../cloudbase/sail/AbstractRDFWebServlet.java | 111 -
.../web/cloudbase/sail/DeleteDataServlet.java | 66 -
.../rdf/web/cloudbase/sail/LoadDataServlet.java | 76 -
.../web/cloudbase/sail/QueryDataServlet.java | 185 --
.../cloudbase/sail/QuerySerqlDataServlet.java | 136 --
.../rdf/web/cloudbase/sail/RDFWebConstants.java | 35 -
.../mvm/cloud/rdf/web/sail/RdfController.java | 349 ---
.../mvm/cloud/rdf/web/sail/ResultFormat.java | 27 -
.../rdf/web/sail/SecurityProviderImpl.java | 34 -
.../cloudbase/sail/AbstractRDFWebServlet.java | 111 +
.../web/cloudbase/sail/DeleteDataServlet.java | 66 +
.../rdf/web/cloudbase/sail/LoadDataServlet.java | 76 +
.../web/cloudbase/sail/QueryDataServlet.java | 185 ++
.../cloudbase/sail/QuerySerqlDataServlet.java | 136 ++
.../rdf/web/cloudbase/sail/RDFWebConstants.java | 35 +
.../cloud/rdf/web/sail/RdfController.java | 349 +++
.../apache/cloud/rdf/web/sail/ResultFormat.java | 27 +
.../rdf/web/sail/SecurityProviderImpl.java | 34 +
.../cloudbase/sail/DeleteDataServletRun.java | 476 ----
.../web/cloudbase/sail/LoadDataServletRun.java | 66 -
.../web/cloudbase/sail/QueryDataServletRun.java | 467 ----
.../rdf/web/sail/RdfControllerAccumuloTest.java | 219 --
.../cloud/rdf/web/sail/RdfControllerTest.java | 160 --
.../cloudbase/sail/DeleteDataServletRun.java | 476 ++++
.../web/cloudbase/sail/LoadDataServletRun.java | 66 +
.../web/cloudbase/sail/QueryDataServletRun.java | 467 ++++
.../rdf/web/sail/RdfControllerAccumuloTest.java | 219 ++
.../cloud/rdf/web/sail/RdfControllerTest.java | 160 ++
1192 files changed, 132476 insertions(+), 132476 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/incubator-rya/blob/44a2dcf0/common/rya.api/src/main/java/mvm/rya/api/InvalidValueTypeMarkerRuntimeException.java
----------------------------------------------------------------------
diff --git a/common/rya.api/src/main/java/mvm/rya/api/InvalidValueTypeMarkerRuntimeException.java b/common/rya.api/src/main/java/mvm/rya/api/InvalidValueTypeMarkerRuntimeException.java
deleted file mode 100644
index eea50f4..0000000
--- a/common/rya.api/src/main/java/mvm/rya/api/InvalidValueTypeMarkerRuntimeException.java
+++ /dev/null
@@ -1,55 +0,0 @@
-package mvm.rya.api;
-
-/*
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements. See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership. The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License. You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied. See the License for the
- * specific language governing permissions and limitations
- * under the License.
- */
-
-
-
-/**
- * Class InvalidValueTypeMarkerRuntimeException
- * Date: Jan 7, 2011
- * Time: 12:58:27 PM
- */
-public class InvalidValueTypeMarkerRuntimeException extends RuntimeException {
- private int valueTypeMarker = -1;
-
- public InvalidValueTypeMarkerRuntimeException(int valueTypeMarker) {
- super();
- this.valueTypeMarker = valueTypeMarker;
- }
-
- public InvalidValueTypeMarkerRuntimeException(int valueTypeMarker, String s) {
- super(s);
- this.valueTypeMarker = valueTypeMarker;
- }
-
- public InvalidValueTypeMarkerRuntimeException(int valueTypeMarker, String s, Throwable throwable) {
- super(s, throwable);
- this.valueTypeMarker = valueTypeMarker;
- }
-
- public InvalidValueTypeMarkerRuntimeException(int valueTypeMarker, Throwable throwable) {
- super(throwable);
- this.valueTypeMarker = valueTypeMarker;
- }
-
- public int getValueTypeMarker() {
- return valueTypeMarker;
- }
-}