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Posted to dev@ctakes.apache.org by Ks Sunder <sh...@gmail.com> on 2017/06/08 06:44:52 UTC
cTakes 3.2.3 issue,
Hi Sean,
Thank you verymuch,
I changed every thing to 3.2.3 version still i am getting this error..
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/ _// __/ / / _ \(_-</ -_) / // / -_) __/ __/ // / / _ |
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Configuration:
C:\Users\NI3102\AppData\Local\Temp\eclipseJettyPlugin.config.WebAppcTakes.xml
Version: 8.1.14.v20131031
Context: /
Port: 8080
Classpath:
C:/Users/NI3102/.m2/repository/ant-contrib/ant-contrib/1.0b3/ant-contrib-1.0b3.jar
C:/Users/NI3102/.m2/repository/antlr/antlr/2.7.7/antlr-2.7.7.jar
C:/Users/NI3102/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar
C:/Users/NI3102/.m2/repository/args4j/args4j/2.0.16/args4j-2.0.16.jar
C:/Users/NI3102/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar
C:/Users/NI3102/.m2/repository/cc/mallet/mallet/2.0.7/mallet-2.0.7.jar
C:/Users/NI3102/.m2/repository/cglib/cglib/2.2.2/cglib-2.2.2.jar
C:/Users/NI3102/.m2/repository/com/carrotsearch/hppc/0.4.1/hppc-0.4.1.jar
C:/Users/NI3102/.m2/repository/com/google/code/findbugs/jsr305/1.3.9/jsr305-1.3.9.jar
C:/Users/NI3102/.m2/repository/com/google/code/gson/gson/2.2.2/gson-2.2.2.jar
C:/Users/NI3102/.m2/repository/com/google/guava/guava/10.0/guava-10.0.jar
C:/Users/NI3102/.m2/repository/com/googlecode/armbrust-file-utils/sqlwrapper/0.0.1/sqlwrapper-0.0.1.jar
C:/Users/NI3102/.m2/repository/com/googlecode/clearnlp/clearnlp/1.3.1/clearnlp-1.3.1.jar
C:/Users/NI3102/.m2/repository/com/googlecode/java-diff-utils/diffutils/1.3.0/diffutils-1.3.0.jar
C:/Users/NI3102/.m2/repository/com/googlecode/json-simple/json-simple/1.1/json-simple-1.1.jar
C:/Users/NI3102/.m2/repository/com/lexicalscope/jewelcli/jewelcli/0.8.3/jewelcli-0.8.3.jar
C:/Users/NI3102/.m2/repository/com/rubiconproject/oss/jchronic/0.2.6/jchronic-0.2.6.jar
C:/Users/NI3102/.m2/repository/com/servlets/cos/05Nov2002/cos-05Nov2002.jar
C:/Users/NI3102/.m2/repository/com/sun/jersey/contribs/jersey-multipart/1.8/jersey-multipart-1.8.jar
C:/Users/NI3102/.m2/repository/com/sun/jersey/jersey-client/1.8/jersey-client-1.8.jar
C:/Users/NI3102/.m2/repository/com/sun/jersey/jersey-core/1.17.1/jersey-core-1.17.1.jar
C:/Users/NI3102/.m2/repository/com/sun/jersey/jersey-json/1.17.1/jersey-json-1.17.1.jar
C:/Users/NI3102/.m2/repository/com/sun/xml/bind/jaxb-impl/2.2.3-1/jaxb-impl-2.2.3-1.jar
C:/Users/NI3102/.m2/repository/commons-beanutils/commons-beanutils/1.8.3/commons-beanutils-1.8.3.jar
C:/Users/NI3102/.m2/repository/commons-cli/commons-cli/1.2/commons-cli-1.2.jar
C:/Users/NI3102/.m2/repository/commons-codec/commons-codec/1.5/commons-codec-1.5.jar
C:/Users/NI3102/.m2/repository/commons-collections/commons-collections/3.2.1/commons-collections-3.2.1.jar
C:/Users/NI3102/.m2/repository/commons-dbcp/commons-dbcp/1.4/commons-dbcp-1.4.jar
C:/Users/NI3102/.m2/repository/commons-digester/commons-digester/2.1/commons-digester-2.1.jar
C:/Users/NI3102/.m2/repository/commons-io/commons-io/2.2/commons-io-2.2.jar
C:/Users/NI3102/.m2/repository/commons-jxpath/commons-jxpath/1.3/commons-jxpath-1.3.jar
C:/Users/NI3102/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar
C:/Users/NI3102/.m2/repository/commons-logging/commons-logging-api/1.1/commons-logging-api-1.1.jar
C:/Users/NI3102/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar
C:/Users/NI3102/.m2/repository/commons-pool/commons-pool/1.5.4/commons-pool-1.5.4.jar
C:/Users/NI3102/.m2/repository/de/bwaldvogel/liblinear/1.94/liblinear-1.94.jar
C:/Users/NI3102/.m2/repository/de/tudarmstadt/ukp/dkpro/core/de.tudarmstadt.ukp.dkpro.core.api.metadata-asl/1.6.0/de.tudarmstadt.ukp.dkpro.core.api.metadata-asl-1.6.0.jar
C:/Users/NI3102/.m2/repository/de/tudarmstadt/ukp/dkpro/core/de.tudarmstadt.ukp.dkpro.core.api.resources-asl/1.6.0/de.tudarmstadt.ukp.dkpro.core.api.resources-asl-1.6.0.jar
C:/Users/NI3102/.m2/repository/dom4j/dom4j/1.6.1/dom4j-1.6.1.jar
C:/Users/NI3102/.m2/repository/edu/mit/findstruct/findstructapi/0.0.1/findstructapi-0.0.1.jar
C:/Users/NI3102/.m2/repository/edu/mit/jwi/2.2.3/jwi-2.2.3.jar
C:/Users/NI3102/.m2/repository/gov/nih/nlm/nls/lvg/lvgdist/2016.0/lvgdist-2016.0.jar
C:/Users/NI3102/.m2/repository/info/bethard/timenorm/0.9.5/timenorm-0.9.5.jar
C:/Users/NI3102/.m2/repository/jakarta-regexp/jakarta-regexp/1.4/jakarta-regexp-1.4.jar
C:/Users/NI3102/.m2/repository/javax/annotation/javax.annotation-api/1.2/javax.annotation-api-1.2.jar
C:/Users/NI3102/.m2/repository/javax/servlet/jstl/1.2/jstl-1.2.jar
C:/Users/NI3102/.m2/repository/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final.jar
C:/Users/NI3102/.m2/repository/javax/ws/rs/javax.ws.rs-api/2.0.1/javax.ws.rs-api-2.0.1.jar
C:/Users/NI3102/.m2/repository/javax/xml/bind/jaxb-api/2.2.5/jaxb-api-2.2.5.jar
C:/Users/NI3102/.m2/repository/jdom/jdom/1.0/jdom-1.0.jar
C:/Users/NI3102/.m2/repository/log4j/log4j/1.2.17/log4j-1.2.17.jar
C:/Users/NI3102/.m2/repository/mysql/mysql-connector-java/5.1.26/mysql-connector-java-5.1.26.jar
C:/Users/NI3102/.m2/repository/net/java/openjfx/backport/openjfx-78-backport-compat/
1.8.0.1/openjfx-78-backport-compat-1.8.0.1.jar
C:/Users/NI3102/.m2/repository/net/sf/ehcache/ehcache-core/2.4.6/ehcache-core-2.4.6.jar
C:/Users/NI3102/.m2/repository/net/sf/mastif/mastif-zoner/1.4/mastif-zoner-1.4.jar
C:/Users/NI3102/.m2/repository/net/sf/opencsv/opencsv/2.3/opencsv-2.3.jar
C:/Users/NI3102/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar
C:/Users/NI3102/.m2/repository/net/sf/supercsv/super-csv/2.0.0-beta-1/super-csv-2.0.0-beta-1.jar
C:/Users/NI3102/.m2/repository/net/sf/trove4j/trove4j/2.0.2/trove4j-2.0.2.jar
C:/Users/NI3102/.m2/repository/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/
3.2.1.1/ctakes-resources-lvg2008-3.2.1.1.jar
C:/Users/NI3102/.m2/repository/net/sourceforge/ctakesresources/ctakes-resources-orangebook-hsqldb/3.1.3/ctakes-resources-orangebook-hsqldb-3.1.3.jar
C:/Users/NI3102/.m2/repository/net/sourceforge/ctakesresources/ctakes-resources-rxnorm-hsqldb-2011ab/3.1.3/ctakes-resources-rxnorm-hsqldb-2011ab-3.1.3.jar
C:/Users/NI3102/.m2/repository/net/sourceforge/ctakesresources/ctakes-resources-snomed-rword-hsqldb-2011ab/
3.2.1.1/ctakes-resources-snomed-rword-hsqldb-2011ab-3.2.1.1.jar
C:/Users/NI3102/.m2/repository/net/sourceforge/ctakesresources/ctakes-resources-umls2011ab/3.1.3/ctakes-resources-umls2011ab-3.1.3.jar
C:/Users/NI3102/.m2/repository/net/sourceforge/javacsv/javacsv/2.0/javacsv-2.0.jar
C:/Users/NI3102/.m2/repository/net/sourceforge/jregex/jregex/1.2_01/jregex-1.2_01.jar
C:/Users/NI3102/.m2/repository/net/sourceforge/openai/openaifsm/0.0.1/openaifsm-0.0.1.jar
C:/Users/NI3102/.m2/repository/no/arktekk/anti-xml_2.11/0.6.0/anti-xml_2.11-0.6.0.jar
C:/Users/NI3102/.m2/repository/nz/ac/waikato/cms/weka/weka-stable/3.6.10/weka-stable-3.6.10.jar
C:/Users/NI3102/.m2/repository/org/apache/ant/ant-launcher/1.9.2/ant-launcher-1.9.2.jar
C:/Users/NI3102/.m2/repository/org/apache/ant/ant/1.9.2/ant-1.9.2.jar
C:/Users/NI3102/.m2/repository/org/apache/commons/commons-compress/1.4.1/commons-compress-1.4.1.jar
C:/Users/NI3102/.m2/repository/org/apache/commons/commons-csv/1.1/commons-csv-1.1.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-assertion-res/3.2.3-SNAPSHOT/ctakes-assertion-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-assertion-zoner-res/3.2.3-SNAPSHOT/ctakes-assertion-zoner-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-assertion-zoner/3.2.3-SNAPSHOT/ctakes-assertion-zoner-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-assertion/3.2.3-SNAPSHOT/ctakes-assertion-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-chunker-res/3.2.3-SNAPSHOT/ctakes-chunker-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-chunker/3.2.3-SNAPSHOT/ctakes-chunker-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-clinical-pipeline-res/3.2.3-SNAPSHOT/ctakes-clinical-pipeline-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-clinical-pipeline/3.2.3-SNAPSHOT/ctakes-clinical-pipeline-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-constituency-parser-res/3.2.3-SNAPSHOT/ctakes-constituency-parser-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-constituency-parser/3.2.3-SNAPSHOT/ctakes-constituency-parser-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-context-tokenizer/3.2.3-SNAPSHOT/ctakes-context-tokenizer-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-core-res/3.2.3-SNAPSHOT/ctakes-core-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-core/3.2.3-SNAPSHOT/ctakes-core-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-coreference-res/3.2.3-SNAPSHOT/ctakes-coreference-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-coreference/3.2.3-SNAPSHOT/ctakes-coreference-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-dependency-parser-res/3.2.3-SNAPSHOT/ctakes-dependency-parser-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-dependency-parser/3.2.3-SNAPSHOT/ctakes-dependency-parser-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-dictionary-lookup-fast-res/3.2.3-SNAPSHOT/ctakes-dictionary-lookup-fast-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-dictionary-lookup-fast/3.2.3-SNAPSHOT/ctakes-dictionary-lookup-fast-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-dictionary-lookup-res/3.2.3-SNAPSHOT/ctakes-dictionary-lookup-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-dictionary-lookup/3.2.3-SNAPSHOT/ctakes-dictionary-lookup-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-drug-ner-res/3.2.3-SNAPSHOT/ctakes-drug-ner-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-drug-ner/3.2.3-SNAPSHOT/ctakes-drug-ner-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-lvg-res/3.2.3-SNAPSHOT/ctakes-lvg-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-lvg/3.2.3-SNAPSHOT/ctakes-lvg-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-ne-contexts-res/3.2.3-SNAPSHOT/ctakes-ne-contexts-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-ne-contexts/3.2.3-SNAPSHOT/ctakes-ne-contexts-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-pos-tagger-res/3.2.3-SNAPSHOT/ctakes-pos-tagger-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-pos-tagger/3.2.3-SNAPSHOT/ctakes-pos-tagger-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-preprocessor/3.2.3-SNAPSHOT/ctakes-preprocessor-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-relation-extractor-res/3.2.3-SNAPSHOT/ctakes-relation-extractor-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-relation-extractor/3.2.3-SNAPSHOT/ctakes-relation-extractor-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-side-effect-res/3.2.3-SNAPSHOT/ctakes-side-effect-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-side-effect/3.2.3-SNAPSHOT/ctakes-side-effect-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-smoking-status-res/3.2.3-SNAPSHOT/ctakes-smoking-status-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-smoking-status/3.2.3-SNAPSHOT/ctakes-smoking-status-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-temporal-res/3.2.3-SNAPSHOT/ctakes-temporal-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-temporal/3.2.3-SNAPSHOT/ctakes-temporal-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-type-system/3.2.3-SNAPSHOT/ctakes-type-system-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-utils/3.2.3-SNAPSHOT/ctakes-utils-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-ytex-res/3.2.3-SNAPSHOT/ctakes-ytex-res-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-ytex-uima/3.2.3-SNAPSHOT/ctakes-ytex-uima-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ctakes/ctakes-ytex/3.2.3-SNAPSHOT/ctakes-ytex-3.2.3-SNAPSHOT.jar
C:/Users/NI3102/.m2/repository/org/apache/ivy/ivy/2.3.0/ivy-2.3.0.jar
C:/Users/NI3102/.m2/repository/org/apache/lucene/lucene-analyzers-common/4.0.0/lucene-analyzers-common-4.0.0.jar
C:/Users/NI3102/.m2/repository/org/apache/lucene/lucene-core/4.0.0/lucene-core-4.0.0.jar
C:/Users/NI3102/.m2/repository/org/apache/lucene/lucene-queries/4.0.0/lucene-queries-4.0.0.jar
C:/Users/NI3102/.m2/repository/org/apache/lucene/lucene-queryparser/4.0.0/lucene-queryparser-4.0.0.jar
C:/Users/NI3102/.m2/repository/org/apache/lucene/lucene-sandbox/4.0.0/lucene-sandbox-4.0.0.jar
C:/Users/NI3102/.m2/repository/org/apache/lucene/lucene-snowball/3.0.3/lucene-snowball-3.0.3.jar
C:/Users/NI3102/.m2/repository/org/apache/maven/maven-model/3.0.5/maven-model-3.0.5.jar
C:/Users/NI3102/.m2/repository/org/apache/opennlp/opennlp-maxent/3.0.3/opennlp-maxent-3.0.3.jar
C:/Users/NI3102/.m2/repository/org/apache/opennlp/opennlp-tools/1.7.2/opennlp-tools-1.7.2.jar
C:/Users/NI3102/.m2/repository/org/apache/opennlp/opennlp-uima/1.5.3/opennlp-uima-1.5.3.jar
C:/Users/NI3102/.m2/repository/org/apache/poi/poi-ooxml-schemas/3.10-FINAL/poi-ooxml-schemas-3.10-FINAL.jar
C:/Users/NI3102/.m2/repository/org/apache/poi/poi-ooxml/3.10-FINAL/poi-ooxml-3.10-FINAL.jar
C:/Users/NI3102/.m2/repository/org/apache/poi/poi/3.10-FINAL/poi-3.10-FINAL.jar
C:/Users/NI3102/.m2/repository/org/apache/solr/solr-commons-csv/3.5.0/solr-commons-csv-3.5.0.jar
C:/Users/NI3102/.m2/repository/org/apache/uima/jVinci/2.9.0/jVinci-2.9.0.jar
C:/Users/NI3102/.m2/repository/org/apache/uima/uimafit-core/2.1.0/uimafit-core-2.1.0.jar
C:/Users/NI3102/.m2/repository/org/apache/uima/uimaj-adapter-vinci/2.9.0/uimaj-adapter-vinci-2.9.0.jar
C:/Users/NI3102/.m2/repository/org/apache/uima/uimaj-core/2.4.0/uimaj-core-2.4.0.jar
C:/Users/NI3102/.m2/repository/org/apache/uima/uimaj-cpe/2.9.0/uimaj-cpe-2.9.0.jar
C:/Users/NI3102/.m2/repository/org/apache/uima/uimaj-document-annotation/2.9.0/uimaj-document-annotation-2.9.0.jar
C:/Users/NI3102/.m2/repository/org/apache/uima/uimaj-tools/2.9.0/uimaj-tools-2.9.0.jar
C:/Users/NI3102/.m2/repository/org/apache/xmlbeans/xmlbeans/2.3.0/xmlbeans-2.3.0.jar
C:/Users/NI3102/.m2/repository/org/aspectj/aspectjweaver/1.7.3/aspectjweaver-1.7.3.jar
C:/Users/NI3102/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-corpus/2.0.0/cleartk-corpus-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-eval/2.0.0/cleartk-eval-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-feature/2.0.0/cleartk-feature-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml-crfsuite/2.0.0/cleartk-ml-crfsuite-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml-liblinear/2.0.0/cleartk-ml-liblinear-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml-libsvm/2.0.0/cleartk-ml-libsvm-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml-mallet/2.0.0/cleartk-ml-mallet-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml-opennlp-maxent/2.0.0/cleartk-ml-opennlp-maxent-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml-svmlight/2.0.0/cleartk-ml-svmlight-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml-tksvmlight/2.0.0/cleartk-ml-tksvmlight-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml/2.0.0/cleartk-ml-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-opennlp-tools/2.0.0/cleartk-opennlp-tools-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-snowball/2.0.0/cleartk-snowball-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-timeml/2.0.0/cleartk-timeml-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-token/2.0.0/cleartk-token-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-type-system/2.0.0/cleartk-type-system-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-util/2.0.0/cleartk-util-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jackson/jackson-core-asl/1.5.0/jackson-core-asl-1.5.0.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jackson/jackson-jaxrs/1.9.2/jackson-jaxrs-1.9.2.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jackson/jackson-mapper-asl/1.5.0/jackson-mapper-asl-1.5.0.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jackson/jackson-xc/1.9.2/jackson-xc-1.9.2.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jettison/jettison/1.1/jettison-1.1.jar
C:/Users/NI3102/.m2/repository/org/codehaus/plexus/plexus-utils/2.0.6/plexus-utils-2.0.6.jar
C:/Users/NI3102/.m2/repository/org/eclipse/jetty/jetty-http/9.2.10.v20150310/jetty-http-9.2.10.v20150310.jar
C:/Users/NI3102/.m2/repository/org/eclipse/jetty/jetty-io/9.2.10.v20150310/jetty-io-9.2.10.v20150310.jar
C:/Users/NI3102/.m2/repository/org/eclipse/jetty/jetty-server/9.2.10.v20150310/jetty-server-9.2.10.v20150310.jar
C:/Users/NI3102/.m2/repository/org/eclipse/jetty/jetty-util/9.2.10.v20150310/jetty-util-9.2.10.v20150310.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/external/aopalliance-repackaged/2.4.0-b10/aopalliance-repackaged-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/external/javax.inject/2.4.0-b10/javax.inject-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/hk2-api/2.4.0-b10/hk2-api-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/hk2-locator/2.4.0-b10/hk2-locator-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/hk2-utils/2.4.0-b10/hk2-utils-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/osgi-resource-locator/1.0.1/osgi-resource-locator-1.0.1.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/bundles/repackaged/jersey-guava/2.17/jersey-guava-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/containers/jersey-container-servlet-core/2.17/jersey-container-servlet-core-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/core/jersey-client/2.17/jersey-client-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/core/jersey-common/2.17/jersey-common-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/core/jersey-server/2.17/jersey-server-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/media/jersey-media-jaxb/2.17/jersey-media-jaxb-2.17.jar
C:/Users/NI3102/.m2/repository/org/hibernate/common/hibernate-commons-annotations/4.0.2.Final/hibernate-commons-annotations-4.0.2.Final.jar
C:/Users/NI3102/.m2/repository/org/hibernate/hibernate-core/4.2.6.Final/hibernate-core-4.2.6.Final.jar
C:/Users/NI3102/.m2/repository/org/hibernate/hibernate-ehcache/4.2.6.Final/hibernate-ehcache-4.2.6.Final.jar
C:/Users/NI3102/.m2/repository/org/hibernate/javax/persistence/hibernate-jpa-2.0-api/1.0.1.Final/hibernate-jpa-2.0-api-1.0.1.Final.jar
C:/Users/NI3102/.m2/repository/org/hsqldb/hsqldb/2.3.4/hsqldb-2.3.4.jar
C:/Users/NI3102/.m2/repository/org/javassist/javassist/3.15.0-GA/javassist-3.15.0-GA.jar
C:/Users/NI3102/.m2/repository/org/jboss/logging/jboss-logging/
3.1.0.GA/jboss-logging-3.1.0.GA.jar
C:/Users/NI3102/.m2/repository/org/jboss/spec/javax/transaction/jboss-transaction-api_1.1_spec/1.0.1.Final/jboss-transaction-api_1.1_spec-1.0.1.Final.jar
C:/Users/NI3102/.m2/repository/org/jdom/jdom-legacy/1.1.3/jdom-legacy-1.1.3.jar
C:/Users/NI3102/.m2/repository/org/jdom/jdom/2.0.2/jdom-2.0.2.jar
C:/Users/NI3102/.m2/repository/org/jdom/jdom2/2.0.6/jdom2-2.0.6.jar
C:/Users/NI3102/.m2/repository/org/jvnet/mimepull/1.4/mimepull-1.4.jar
C:/Users/NI3102/.m2/repository/org/marketcetera/fork/commons-csv/2.4.1/commons-csv-2.4.1.jar
C:/Users/NI3102/.m2/repository/org/scala-lang/scala-library/2.11.7/scala-library-2.11.7.jar
C:/Users/NI3102/.m2/repository/org/scala-tools/sbinary/sbinary_2.9.0/0.4.0/sbinary_2.9.0-0.4.0.jar
C:/Users/NI3102/.m2/repository/org/slf4j/slf4j-api/1.6.1/slf4j-api-1.6.1.jar
C:/Users/NI3102/.m2/repository/org/slf4j/slf4j-log4j12/1.6.1/slf4j-log4j12-1.6.1.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-aop/3.1.2.RELEASE/spring-aop-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-asm/3.1.2.RELEASE/spring-asm-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-beans/3.1.2.RELEASE/spring-beans-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-context/3.1.2.RELEASE/spring-context-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-core/3.1.2.RELEASE/spring-core-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-expression/3.1.2.RELEASE/spring-expression-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-jdbc/3.1.2.RELEASE/spring-jdbc-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-orm/3.1.2.RELEASE/spring-orm-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-tx/3.1.2.RELEASE/spring-tx-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/tukaani/xz/1.0/xz-1.0.jar
C:/Users/NI3102/.m2/repository/stax/stax-api/1.0.1/stax-api-1.0.1.jar
C:/Users/NI3102/.m2/repository/tw/edu/ntu/csie/libsvm/3.1/libsvm-3.1.jar
C:/Users/NI3102/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar
C:/Users/NI3102/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar
C:/Users/NI3102/Desktop/NewWorkspace170117/WebAppcTakes/target/classes
2017-06-08 12:08:37.826:INFO:oejs.Server:jetty-8.1.14.v20131031
Initilizing Pipeline...
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss}
%5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
2017-06-08 12:08:41.693:WARN:oejuc.AbstractLifeCycle:FAILED cTakesWebClass:
java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at
org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at
org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at
org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.ClassNotFoundException: gov.nih.nlm.nls.lvg.Api.LvgCmdApi
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at
org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at
org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at
org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
08 Jun 2017 12:08:41 INFO LvgAnnotator - URL for lvg.properties
=/C:/Users/NI3102/Desktop/NewWorkspace170117/WebAppcTakes/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties
Jun 08, 2017 12:08:41 PM com.sun.jersey.api.core.PackagesResourceConfig init
INFO: Scanning for root resource and provider classes in the packages:
com.test.rest.app
Jun 08, 2017 12:08:41 PM com.sun.jersey.api.core.ScanningResourceConfig
logClasses
INFO: Root resource classes found:
class com.test.rest.app.MyJerseyPage
Jun 08, 2017 12:08:41 PM com.sun.jersey.api.core.ScanningResourceConfig init
INFO: No provider classes found.
Jun 08, 2017 12:08:42 PM
com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.17.1 02/28/2013
03:28 PM'
Jun 08, 2017 12:08:42 PM com.sun.jersey.spi.inject.Errors
processErrorMessages
WARNING: The following warnings have been detected with resource and/or
provider classes:
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.getCUIforCSVfile(), MUST return a non-void
type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.Test(), MUST return a non-void type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.Test1(), MUST return a non-void type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.csvReaderForUMLwords(), MUST return a
non-void type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.getCUIforCSVfile1(), MUST return a non-void
type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.getLineByLineTest(), MUST return a non-void
type.
2017-06-08 12:08:42.929:WARN:oejuc.AbstractLifeCycle:FAILED
o.e.j.w.WebAppContext{/,file:/C:/Users/NI3102/Desktop/NewWorkspace170117/WebAppcTakes/src/main/webapp/},C:\Users\NI3102\Desktop\NewWorkspace170117\WebAppcTakes\src\main\webapp:
java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at
org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at
org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at
org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.ClassNotFoundException: gov.nih.nlm.nls.lvg.Api.LvgCmdApi
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at
org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at
org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at
org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-06-08 12:08:42.931:WARN:oejuc.AbstractLifeCycle:FAILED
org.eclipse.jetty.server.Server@629adce: java.lang.NoClassDefFoundError:
Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at
org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at
org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at
org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.ClassNotFoundException: gov.nih.nlm.nls.lvg.Api.LvgCmdApi
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at
org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at
org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at
org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Exception in thread "main" java.lang.NoClassDefFoundError:
Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at
org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at
org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at
org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at
org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at
org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by: java.lang.ClassNotFoundException:
gov.nih.nlm.nls.lvg.Api.LvgCmdApi
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
... 26 more
-----------------------------------------
-----------------------------------------------
for this i added Maven dependency :
<!-- https://mvnrepository.com/artifact/gov.nih.nlm.nls.lvg/lvgdist -->
<dependency>
<groupId>gov.nih.nlm.nls.lvg</groupId>
<artifactId>lvgdist</artifactId>
<version>2015</version>
</dependency>
then i am getting DB version issue...
which version can i use this ..please help me
Error is :
08 Jun 2017 12:12:21 INFO AbstractJCasTermAnnotator - Using dictionary
lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
08 Jun 2017 12:12:21 INFO AbstractJCasTermAnnotator - Exclusion tagset
loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN
VBP VBZ WDT WP WPS WRB
08 Jun 2017 12:12:21 INFO AbstractJCasTermAnnotator - Using minimum term
text span: 3
08 Jun 2017 12:12:21 INFO AbstractJCasTermAnnotator - Using Dictionary
Descriptor: org/apache/ctakes/dictionary/lookup/fast/cTakesHsql.xml
08 Jun 2017 12:12:21 INFO DictionaryDescriptorParser - Parsing dictionary
specifications:
08 Jun 2017 12:12:21 INFO JdbcConnectionFactory - Connecting to
jdbc:hsqldb:file:org/apache/ctakes/dictionary/lookup/fast/ctakessnorx/ctakessnorx:
.08 Jun 2017 12:12:21 FATAL ENGINE - could not reopen database
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at
org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
08 Jun 2017 12:12:21 FATAL ENGINE - could not reopen database
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at
org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
08 Jun 2017 12:12:21 ERROR JdbcConnectionFactory - Could not create
Connection with
jdbc:hsqldb:file:C:\Users\NI3102\Desktop\NewWorkspace170117\WebAppcTakes\target\classes\org\apache\ctakes\dictionary\lookup\fast\ctakessnorx\ctakessnorx
as sa
java.sql.SQLException: wrong database file version
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at
org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by: org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
... 44 more
08 Jun 2017 12:12:21 ERROR JdbcRareWordDictionary - Could not Connect to
Dictionary UmlsHsqlRareWord
2017-06-08 12:12:21.691:WARN:/:unavailable
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE
LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
resource for bundle java.util.PropertyResourceBundle, key Could not
construct
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
Can't find resource for bundle java.util.PropertyResourceBundle, key Could
not construct
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: wrong database file version
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at
org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at
org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-06-08 12:12:21.700:WARN:oejuc.AbstractLifeCycle:FAILED cTakesWebClass:
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:35)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE
LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
resource for bundle java.util.PropertyResourceBundle, key Could not
construct
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
Can't find resource for bundle java.util.PropertyResourceBundle, key Could
not construct
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: wrong database file version
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at
org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at
org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Jun 08, 2017 12:12:21 PM com.sun.jersey.api.core.PackagesResourceConfig init
INFO: Scanning for root resource and provider classes in the packages:
com.test.rest.app
Jun 08, 2017 12:12:21 PM com.sun.jersey.api.core.ScanningResourceConfig
logClasses
INFO: Root resource classes found:
class com.test.rest.app.MyJerseyPage
Jun 08, 2017 12:12:21 PM com.sun.jersey.api.core.ScanningResourceConfig init
INFO: No provider classes found.
Jun 08, 2017 12:12:22 PM
com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.17.1 02/28/2013
03:28 PM'
Jun 08, 2017 12:12:22 PM com.sun.jersey.spi.inject.Errors
processErrorMessages
WARNING: The following warnings have been detected with resource and/or
provider classes:
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.csvReaderForUMLwords(), MUST return a
non-void type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.getCUIforCSVfile1(), MUST return a non-void
type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.getLineByLineTest(), MUST return a non-void
type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.Test1(), MUST return a non-void type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.getCUIforCSVfile(), MUST return a non-void
type.
WARNING: A HTTP GET method, public void
com.test.rest.app.MyJerseyPage.Test(), MUST return a non-void type.
2017-06-08 12:12:22.809:WARN:oejw.WebAppContext:Failed startup of context
o.e.j.w.WebAppContext{/,file:/C:/Users/NI3102/Desktop/NewWorkspace170117/WebAppcTakes/src/main/webapp/},C:\Users\NI3102\Desktop\NewWorkspace170117\WebAppcTakes\src\main\webapp
javax.servlet.ServletException:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:35)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: Initialization of
annotator class
"org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed.
(Descriptor: <unknown>)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE
LOCALIZATION FAILED: java.util.MissingResourceException: Can't find
resource for bundle java.util.PropertyResourceBundle, key Could not
construct
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException:
EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException:
Can't find resource for bundle java.util.PropertyResourceBundle, key Could
not construct
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: wrong database file version
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at
org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at
org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at
org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at
org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at
org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at
org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at
org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at
org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at
org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at
org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at
org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at
org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at
org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at
org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at
org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at
org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at
org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at
net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at
net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
regards,
shyam k.
RE: cTakes 3.2.3 issue,
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
Hi Shyam,
From the classpath it looks like the lvg version is 2016:
C:/Users/NI3102/.m2/repository/gov/nih/nlm/nls/lvg/lvgdist/2016.0/lvgdist-2016.0.jar
I think that this is a version newer than that used by 3.2.3. It could be that the LvgApiCmd class doesn’t exist in that version:
Caused by: java.lang.ClassNotFoundException: gov.nih.nlm.nls.lvg.Api.LvgCmdApi
It also looks like the hsql version in the classpath is 2.3.4:
C:/Users/NI3102/.m2/repository/org/hsqldb/hsqldb/2.3.4/hsqldb-2.3.4.jar
But this version was not used until ctakes 4.0.
That is most likely what causes the error:
.08 Jun 2017 12:12:21 FATAL ENGINE - could not reopen database
org.hsqldb.HsqlException: wrong database file version
It seems that whatever environment you have is still a strange mixture of ctakes 3.2 and 4.0
Aside from downloading the 3.2.2 release or an “older” snapshot of the 3.2.3 repository I don’t know what to say. Or, start from scratch with a full 4.0 release and if you are editing source or using specific entry points then update a copy of the 4.0 code.
Does anybody else have an idea?
Sean
From: Ks Sunder [mailto:shyam769@gmail.com]
Sent: Thursday, June 08, 2017 2:45 AM
To: dev@ctakes.apache.org; Finan, Sean
Subject: cTakes 3.2.3 issue,
Hi Sean,
Thank you verymuch,
I changed every thing to 3.2.3 version still i am getting this error..
____ ___ __ __ __ ___
/ __/___/ (_)__ ___ ___ __ / /__ / /_/ /___ __ ( _ )
/ _// __/ / / _ \(_-</ -_) / // / -_) __/ __/ // / / _ |
/___/\__/_/_/ .__/___/\__/ \___/\__/\__/\__/\_, / \___/
/_/ /___/
Configuration: C:\Users\NI3102\AppData\Local\Temp\eclipseJettyPlugin.config.WebAppcTakes.xml
Version: 8.1.14.v20131031
Context: /
Port: 8080
Classpath: C:/Users/NI3102/.m2/repository/ant-contrib/ant-contrib/1.0b3/ant-contrib-1.0b3.jar
C:/Users/NI3102/.m2/repository/antlr/antlr/2.7.7/antlr-2.7.7.jar
C:/Users/NI3102/.m2/repository/aopalliance/aopalliance/1.0/aopalliance-1.0.jar
C:/Users/NI3102/.m2/repository/args4j/args4j/2.0.16/args4j-2.0.16.jar
C:/Users/NI3102/.m2/repository/asm/asm/3.3.1/asm-3.3.1.jar
C:/Users/NI3102/.m2/repository/cc/mallet/mallet/2.0.7/mallet-2.0.7.jar
C:/Users/NI3102/.m2/repository/cglib/cglib/2.2.2/cglib-2.2.2.jar
C:/Users/NI3102/.m2/repository/com/carrotsearch/hppc/0.4.1/hppc-0.4.1.jar
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C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml-tksvmlight/2.0.0/cleartk-ml-tksvmlight-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-ml/2.0.0/cleartk-ml-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-opennlp-tools/2.0.0/cleartk-opennlp-tools-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-snowball/2.0.0/cleartk-snowball-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-timeml/2.0.0/cleartk-timeml-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-token/2.0.0/cleartk-token-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-type-system/2.0.0/cleartk-type-system-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/cleartk/cleartk-util/2.0.0/cleartk-util-2.0.0.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jackson/jackson-core-asl/1.5.0/jackson-core-asl-1.5.0.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jackson/jackson-jaxrs/1.9.2/jackson-jaxrs-1.9.2.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jackson/jackson-mapper-asl/1.5.0/jackson-mapper-asl-1.5.0.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jackson/jackson-xc/1.9.2/jackson-xc-1.9.2.jar
C:/Users/NI3102/.m2/repository/org/codehaus/jettison/jettison/1.1/jettison-1.1.jar
C:/Users/NI3102/.m2/repository/org/codehaus/plexus/plexus-utils/2.0.6/plexus-utils-2.0.6.jar
C:/Users/NI3102/.m2/repository/org/eclipse/jetty/jetty-http/9.2.10.v20150310/jetty-http-9.2.10.v20150310.jar
C:/Users/NI3102/.m2/repository/org/eclipse/jetty/jetty-io/9.2.10.v20150310/jetty-io-9.2.10.v20150310.jar
C:/Users/NI3102/.m2/repository/org/eclipse/jetty/jetty-server/9.2.10.v20150310/jetty-server-9.2.10.v20150310.jar
C:/Users/NI3102/.m2/repository/org/eclipse/jetty/jetty-util/9.2.10.v20150310/jetty-util-9.2.10.v20150310.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/external/aopalliance-repackaged/2.4.0-b10/aopalliance-repackaged-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/external/javax.inject/2.4.0-b10/javax.inject-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/hk2-api/2.4.0-b10/hk2-api-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/hk2-locator/2.4.0-b10/hk2-locator-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/hk2-utils/2.4.0-b10/hk2-utils-2.4.0-b10.jar
C:/Users/NI3102/.m2/repository/org/glassfish/hk2/osgi-resource-locator/1.0.1/osgi-resource-locator-1.0.1.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/bundles/repackaged/jersey-guava/2.17/jersey-guava-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/containers/jersey-container-servlet-core/2.17/jersey-container-servlet-core-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/core/jersey-client/2.17/jersey-client-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/core/jersey-common/2.17/jersey-common-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/core/jersey-server/2.17/jersey-server-2.17.jar
C:/Users/NI3102/.m2/repository/org/glassfish/jersey/media/jersey-media-jaxb/2.17/jersey-media-jaxb-2.17.jar
C:/Users/NI3102/.m2/repository/org/hibernate/common/hibernate-commons-annotations/4.0.2.Final/hibernate-commons-annotations-4.0.2.Final.jar
C:/Users/NI3102/.m2/repository/org/hibernate/hibernate-core/4.2.6.Final/hibernate-core-4.2.6.Final.jar
C:/Users/NI3102/.m2/repository/org/hibernate/hibernate-ehcache/4.2.6.Final/hibernate-ehcache-4.2.6.Final.jar
C:/Users/NI3102/.m2/repository/org/hibernate/javax/persistence/hibernate-jpa-2.0-api/1.0.1.Final/hibernate-jpa-2.0-api-1.0.1.Final.jar
C:/Users/NI3102/.m2/repository/org/hsqldb/hsqldb/2.3.4/hsqldb-2.3.4.jar
C:/Users/NI3102/.m2/repository/org/javassist/javassist/3.15.0-GA/javassist-3.15.0-GA.jar
C:/Users/NI3102/.m2/repository/org/jboss/logging/jboss-logging/3.1.0.GA/jboss-logging-3.1.0.GA.jar<https://urldefense.proofpoint.com/v2/url?u=http-3A__3.1.0.GA_jboss-2Dlogging-2D3.1.0.GA.jar&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=pzwLWiS2B_GMqw2i4Ab6R9i8n3UpHnHZY0L6b-aGUmE&s=nmbQjk3rj6ebGUJqufDJ55CqEAtWkZlY99_QTdne12c&e=>
C:/Users/NI3102/.m2/repository/org/jboss/spec/javax/transaction/jboss-transaction-api_1.1_spec/1.0.1.Final/jboss-transaction-api_1.1_spec-1.0.1.Final.jar
C:/Users/NI3102/.m2/repository/org/jdom/jdom-legacy/1.1.3/jdom-legacy-1.1.3.jar
C:/Users/NI3102/.m2/repository/org/jdom/jdom/2.0.2/jdom-2.0.2.jar
C:/Users/NI3102/.m2/repository/org/jdom/jdom2/2.0.6/jdom2-2.0.6.jar
C:/Users/NI3102/.m2/repository/org/jvnet/mimepull/1.4/mimepull-1.4.jar
C:/Users/NI3102/.m2/repository/org/marketcetera/fork/commons-csv/2.4.1/commons-csv-2.4.1.jar
C:/Users/NI3102/.m2/repository/org/scala-lang/scala-library/2.11.7/scala-library-2.11.7.jar
C:/Users/NI3102/.m2/repository/org/scala-tools/sbinary/sbinary_2.9.0/0.4.0/sbinary_2.9.0-0.4.0.jar
C:/Users/NI3102/.m2/repository/org/slf4j/slf4j-api/1.6.1/slf4j-api-1.6.1.jar
C:/Users/NI3102/.m2/repository/org/slf4j/slf4j-log4j12/1.6.1/slf4j-log4j12-1.6.1.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-aop/3.1.2.RELEASE/spring-aop-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-asm/3.1.2.RELEASE/spring-asm-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-beans/3.1.2.RELEASE/spring-beans-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-context/3.1.2.RELEASE/spring-context-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-core/3.1.2.RELEASE/spring-core-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-expression/3.1.2.RELEASE/spring-expression-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-jdbc/3.1.2.RELEASE/spring-jdbc-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-orm/3.1.2.RELEASE/spring-orm-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/springframework/spring-tx/3.1.2.RELEASE/spring-tx-3.1.2.RELEASE.jar
C:/Users/NI3102/.m2/repository/org/tukaani/xz/1.0/xz-1.0.jar
C:/Users/NI3102/.m2/repository/stax/stax-api/1.0.1/stax-api-1.0.1.jar
C:/Users/NI3102/.m2/repository/tw/edu/ntu/csie/libsvm/3.1/libsvm-3.1.jar
C:/Users/NI3102/.m2/repository/xerces/xercesImpl/2.11.0/xercesImpl-2.11.0.jar
C:/Users/NI3102/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar
C:/Users/NI3102/Desktop/NewWorkspace170117/WebAppcTakes/target/classes
2017-06-08 12:08:37.826:INFO:oejs.Server:jetty-8.1.14.v20131031
Initilizing Pipeline...
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
2017-06-08 12:08:41.693:WARN:oejuc.AbstractLifeCycle:FAILED cTakesWebClass: java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.ClassNotFoundException: gov.nih.nlm.nls.lvg.Api.LvgCmdApi
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
08 Jun 2017 12:08:41 INFO LvgAnnotator - URL for lvg.properties =/C:/Users/NI3102/Desktop/NewWorkspace170117/WebAppcTakes/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties
Jun 08, 2017 12:08:41 PM com.sun.jersey.api.core.PackagesResourceConfig init
INFO: Scanning for root resource and provider classes in the packages:
com.test.rest.app
Jun 08, 2017 12:08:41 PM com.sun.jersey.api.core.ScanningResourceConfig logClasses
INFO: Root resource classes found:
class com.test.rest.app.MyJerseyPage
Jun 08, 2017 12:08:41 PM com.sun.jersey.api.core.ScanningResourceConfig init
INFO: No provider classes found.
Jun 08, 2017 12:08:42 PM com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.17.1 02/28/2013 03:28 PM'
Jun 08, 2017 12:08:42 PM com.sun.jersey.spi.inject.Errors processErrorMessages
WARNING: The following warnings have been detected with resource and/or provider classes:
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.getCUIforCSVfile(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.Test(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.Test1(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.csvReaderForUMLwords(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.getCUIforCSVfile1(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.getLineByLineTest(), MUST return a non-void type.
2017-06-08 12:08:42.929:WARN:oejuc.AbstractLifeCycle:FAILED o.e.j.w.WebAppContext{/,file:/C:/Users/NI3102/Desktop/NewWorkspace170117/WebAppcTakes/src/main/webapp/},C:\Users\NI3102\Desktop\NewWorkspace170117\WebAppcTakes\src\main\webapp: java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.ClassNotFoundException: gov.nih.nlm.nls.lvg.Api.LvgCmdApi
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-06-08 12:08:42.931:WARN:oejuc.AbstractLifeCycle:FAILED org.eclipse.jetty.server.Server@629adce<ma...@629adce>: java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.ClassNotFoundException: gov.nih.nlm.nls.lvg.Api.LvgCmdApi
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Exception in thread "main" java.lang.NoClassDefFoundError: Lgov/nih/nlm/nls/lvg/Api/LvgCmdApi;
at java.lang.Class.getDeclaredFields0(Native Method)
at java.lang.Class.privateGetDeclaredFields(Class.java:2583)
at java.lang.Class.getDeclaredFields(Class.java:1916)
at org.apache.uima.fit.internal.ReflectionUtil.getFields(ReflectionUtil.java:60)
at org.apache.uima.fit.factory.ConfigurationParameterFactory.createConfigurationData(ConfigurationParameterFactory.java:411)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:280)
at org.apache.uima.fit.factory.ExternalResourceFactory.createExternalResourceDescription(ExternalResourceFactory.java:232)
at org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:662)
at org.apache.ctakes.clinicalpipeline.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:118)
at com.test.webservlet.app.Pipeline.getAggregateBuilder(Pipeline.java:34)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:32)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by: java.lang.ClassNotFoundException: gov.nih.nlm.nls.lvg.Api.LvgCmdApi
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
... 26 more
-----------------------------------------
-----------------------------------------------
for this i added Maven dependency :
<!-- https://mvnrepository.com/artifact/gov.nih.nlm.nls.lvg/lvgdist<https://urldefense.proofpoint.com/v2/url?u=https-3A__mvnrepository.com_artifact_gov.nih.nlm.nls.lvg_lvgdist&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=pzwLWiS2B_GMqw2i4Ab6R9i8n3UpHnHZY0L6b-aGUmE&s=_WCv6iuDPQP6BxCu9mnfoz1YJ0aGlqgUt8mdTKbnOjY&e=> -->
<dependency>
<groupId>gov.nih.nlm.nls.lvg</groupId>
<artifactId>lvgdist</artifactId>
<version>2015</version>
</dependency>
then i am getting DB version issue...
which version can i use this ..please help me
Error is :
08 Jun 2017 12:12:21 INFO AbstractJCasTermAnnotator - Using dictionary lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
08 Jun 2017 12:12:21 INFO AbstractJCasTermAnnotator - Exclusion tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB
08 Jun 2017 12:12:21 INFO AbstractJCasTermAnnotator - Using minimum term text span: 3
08 Jun 2017 12:12:21 INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/cTakesHsql.xml
08 Jun 2017 12:12:21 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
08 Jun 2017 12:12:21 INFO JdbcConnectionFactory - Connecting to jdbc:hsqldb:file:org/apache/ctakes/dictionary/lookup/fast/ctakessnorx/ctakessnorx:
.08 Jun 2017 12:12:21 FATAL ENGINE - could not reopen database
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
08 Jun 2017 12:12:21 FATAL ENGINE - could not reopen database
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
08 Jun 2017 12:12:21 ERROR JdbcConnectionFactory - Could not create Connection with jdbc:hsqldb:file:C:\Users\NI3102\Desktop\NewWorkspace170117\WebAppcTakes\target\classes\org\apache\ctakes\dictionary\lookup\fast\ctakessnorx\ctakessnorx as sa
java.sql.SQLException: wrong database file version
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by: org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
... 44 more
08 Jun 2017 12:12:21 ERROR JdbcRareWordDictionary - Could not Connect to Dictionary UmlsHsqlRareWord
2017-06-08 12:12:21.691:WARN:/:unavailable
org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: <unknown>)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException: EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: wrong database file version
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
2017-06-08 12:12:21.700:WARN:oejuc.AbstractLifeCycle:FAILED cTakesWebClass: javax.servlet.ServletException: org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: <unknown>)
javax.servlet.ServletException: org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: <unknown>)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:35)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: <unknown>)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException: EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: wrong database file version
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Jun 08, 2017 12:12:21 PM com.sun.jersey.api.core.PackagesResourceConfig init
INFO: Scanning for root resource and provider classes in the packages:
com.test.rest.app
Jun 08, 2017 12:12:21 PM com.sun.jersey.api.core.ScanningResourceConfig logClasses
INFO: Root resource classes found:
class com.test.rest.app.MyJerseyPage
Jun 08, 2017 12:12:21 PM com.sun.jersey.api.core.ScanningResourceConfig init
INFO: No provider classes found.
Jun 08, 2017 12:12:22 PM com.sun.jersey.server.impl.application.WebApplicationImpl _initiate
INFO: Initiating Jersey application, version 'Jersey: 1.17.1 02/28/2013 03:28 PM'
Jun 08, 2017 12:12:22 PM com.sun.jersey.spi.inject.Errors processErrorMessages
WARNING: The following warnings have been detected with resource and/or provider classes:
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.csvReaderForUMLwords(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.getCUIforCSVfile1(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.getLineByLineTest(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.Test1(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.getCUIforCSVfile(), MUST return a non-void type.
WARNING: A HTTP GET method, public void com.test.rest.app.MyJerseyPage.Test(), MUST return a non-void type.
2017-06-08 12:12:22.809:WARN:oejw.WebAppContext:Failed startup of context o.e.j.w.WebAppContext{/,file:/C:/Users/NI3102/Desktop/NewWorkspace170117/WebAppcTakes/src/main/webapp/},C:\Users\NI3102\Desktop\NewWorkspace170117\WebAppcTakes\src\main\webapp
javax.servlet.ServletException: org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: <unknown>)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:35)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: <unknown>)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:252)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.resource.ResourceInitializationException: EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:131)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.apache.uima.analysis_engine.annotator.AnnotatorContextException: EXCEPTION MESSAGE LOCALIZATION FAILED: java.util.MissingResourceException: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:199)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
java.sql.SQLException: wrong database file version
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedLauncherMain.main(JettyEmbeddedLauncherMain.java:42)
Caused by:
org.hsqldb.HsqlException: wrong database file version
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.error.Error.error(Unknown Source)
at org.hsqldb.persist.HsqlDatabaseProperties.load(Unknown Source)
at org.hsqldb.persist.Logger.open(Unknown Source)
at org.hsqldb.Database.reopen(Unknown Source)
at org.hsqldb.Database.open(Unknown Source)
at org.hsqldb.DatabaseManager.getDatabase(Unknown Source)
at org.hsqldb.DatabaseManager.newSession(Unknown Source)
at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source)
at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:247)
at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory.getConnection(JdbcConnectionFactory.java:84)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91)
at org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser.java:196)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser.java:156)
at org.apache.ctakes.dictionary.lookup2.dictionary.DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser.java:128)
at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator.initialize(AbstractJCasTermAnnotator.java:129)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:250)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.initialize(PrimitiveAnalysisEngine_impl.java:156)
at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource(AnalysisEngineFactory_impl.java:94)
at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource(CompositeResourceFactory_impl.java:62)
at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:269)
at org.apache.uima.UIMAFramework.produceAnalysisEngine(UIMAFramework.java:387)
at org.apache.uima.analysis_engine.asb.impl.ASB_impl.setup(ASB_impl.java:254)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initASB(AggregateAnalysisEngine_impl.java:431)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.initialize(AggregateAnalysisEngine_impl.java:185)
at org.apache.uima.fit.factory.AnalysisEngineFactory.createEngine(AnalysisEngineFactory.java:711)
at org.apache.uima.fit.factory.AggregateBuilder.createAggregate(AggregateBuilder.java:207)
at com.test.webservlet.app.cTakesWebClass.init(cTakesWebClass.java:33)
at org.eclipse.jetty.servlet.ServletHolder.initServlet(ServletHolder.java:532)
at org.eclipse.jetty.servlet.ServletHolder.doStart(ServletHolder.java:344)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.servlet.ServletHandler.initialize(ServletHandler.java:791)
at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:265)
at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:95)
at org.eclipse.jetty.server.Server.doStart(Server.java:282)
at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
at net.sourceforge.eclipsejetty.starter.embedded.JettyEmbeddedAdapter.start(JettyEmbeddedAdapter.java:67)
at net.sourceforge.eclipsejetty.starter.common.AbstractJettyLauncherMain.launch(AbstractJettyLauncherMain.java:84)
at
regards,
shyam k.