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Posted to dev@hama.apache.org by "Edward J. Yoon (JIRA)" <ji...@apache.org> on 2009/02/24 04:08:03 UTC

[jira] Created: (HAMA-158) Implementation of random sparse matrix using mapreduce

Implementation of random sparse matrix using mapreduce
------------------------------------------------------

                 Key: HAMA-158
                 URL: https://issues.apache.org/jira/browse/HAMA-158
             Project: Hama
          Issue Type: Sub-task
            Reporter: Edward J. Yoon




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[jira] Updated: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Edward J. Yoon (JIRA)" <ji...@apache.org>.
     [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Edward J. Yoon updated HAMA-158:
--------------------------------

    Resolution: Fixed
        Status: Resolved  (was: Patch Available)

I've just committed this.

> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>    Affects Versions: 0.1.0
>            Reporter: Edward J. Yoon
>            Assignee: Edward J. Yoon
>             Fix For: 0.1.0
>
>         Attachments: HAMA-158.patch, HAMA-158_v01.patch, HAMA-158_v02.patch
>
>


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[jira] Updated: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Edward J. Yoon (JIRA)" <ji...@apache.org>.
     [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Edward J. Yoon updated HAMA-158:
--------------------------------

        Fix Version/s: 0.1.0
    Affects Version/s: 0.1.0
               Status: Patch Available  (was: In Progress)

Running patch through Hudson 

> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>    Affects Versions: 0.1.0
>            Reporter: Edward J. Yoon
>            Assignee: Edward J. Yoon
>             Fix For: 0.1.0
>
>         Attachments: HAMA-158.patch, HAMA-158_v01.patch, HAMA-158_v02.patch
>
>


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[jira] Assigned: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Edward J. Yoon (JIRA)" <ji...@apache.org>.
     [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Edward J. Yoon reassigned HAMA-158:
-----------------------------------

    Assignee: Edward J. Yoon

> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>            Reporter: Edward J. Yoon
>            Assignee: Edward J. Yoon
>         Attachments: HAMA-158.patch
>
>


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[jira] Updated: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Edward J. Yoon (JIRA)" <ji...@apache.org>.
     [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Edward J. Yoon updated HAMA-158:
--------------------------------

    Attachment: HAMA-158.patch

Here's my test patch.

> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>            Reporter: Edward J. Yoon
>            Assignee: Edward J. Yoon
>         Attachments: HAMA-158.patch
>
>


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[jira] Commented: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Edward J. Yoon (JIRA)" <ji...@apache.org>.
    [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12680381#action_12680381 ] 

Edward J. Yoon commented on HAMA-158:
-------------------------------------

The one zero matrix also need.

> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>            Reporter: Edward J. Yoon
>


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[jira] Updated: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Edward J. Yoon (JIRA)" <ji...@apache.org>.
     [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Edward J. Yoon updated HAMA-158:
--------------------------------

    Attachment: HAMA-158_v01.patch

attach my patch.

> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>            Reporter: Edward J. Yoon
>            Assignee: Edward J. Yoon
>         Attachments: HAMA-158.patch, HAMA-158_v01.patch
>
>


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[jira] Commented: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Hudson (JIRA)" <ji...@apache.org>.
    [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12700671#action_12700671 ] 

Hudson commented on HAMA-158:
-----------------------------

+1 overall.  Here are the results of testing the latest attachment 
http://issues.apache.org/jira/secure/attachment/12405899/HAMA-158_v02.patch
against trunk revision 762235.

    @author +1.  The patch does not contain any @author tags.

    tests included +1.  The patch appears to include 6 new or modified tests.

    javadoc +1.  The javadoc tool did not generate any warning messages.

    javac +1.  The applied patch does not generate any new javac compiler warnings.

    release audit +1.  The applied patch does not generate any new release audit warnings.

    findbugs +1.  The patch does not introduce any new Findbugs warnings.

    core tests +1.  The patch passed core unit tests.

Test results: http://hudson.zones.apache.org/hudson/job/Hama-Patch/169/testReport/
Findbugs warnings: http://hudson.zones.apache.org/hudson/job/Hama-Patch/169/artifact/trunk/build/reports/findbugs/newPatchFindbugsWarnings.html
Checkstyle results: http://hudson.zones.apache.org/hudson/job/Hama-Patch/169/artifact/trunk/build/test/checkstyle-errors.html
Console output: http://hudson.zones.apache.org/hudson/job/Hama-Patch/169/console

This message is automatically generated.

> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>    Affects Versions: 0.1.0
>            Reporter: Edward J. Yoon
>            Assignee: Edward J. Yoon
>             Fix For: 0.1.0
>
>         Attachments: HAMA-158.patch, HAMA-158_v01.patch, HAMA-158_v02.patch
>
>


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[jira] Updated: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Edward J. Yoon (JIRA)" <ji...@apache.org>.
     [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Edward J. Yoon updated HAMA-158:
--------------------------------

    Attachment: HAMA-158_v02.patch

To avoid the timeout error, the iterative method was used for mat-mat mult as a each row of matrix A * matrix B.

> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>            Reporter: Edward J. Yoon
>            Assignee: Edward J. Yoon
>         Attachments: HAMA-158.patch, HAMA-158_v01.patch, HAMA-158_v02.patch
>
>


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[jira] Commented: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Edward J. Yoon (JIRA)" <ji...@apache.org>.
    [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12682240#action_12682240 ] 

Edward J. Yoon commented on HAMA-158:
-------------------------------------

Current algorithm seems too heavy to each mapper.

[d8g053:/root/hama-trunk]# bin/hama examples mult fiveA fiveB
09/03/16 16:34:25 INFO hama.AbstractMatrix: Initializing the matrix storage.
09/03/16 16:34:29 INFO hama.AbstractMatrix: Create Matrix SparseMatrix_randijiat
09/03/16 16:34:29 WARN mapred.JobClient: Use GenericOptionsParser for parsing the arguments. Applications should implement Tool for the same.
09/03/16 16:34:29 WARN mapred.JobClient: Use genericOptions for the option -libjars
09/03/16 16:34:30 WARN mapred.JobClient: No job jar file set.  User classes may not be found. See JobConf(Class) or JobConf#setJar(String).
09/03/16 16:34:30 INFO mapred.HTableInputFormatBase: split: 0->d8g054.nhncorp.com:,000000000001692
09/03/16 16:34:30 INFO mapred.HTableInputFormatBase: split: 1->d8g055.nhncorp.com:000000000001692,000000000003678
09/03/16 16:34:30 INFO mapred.HTableInputFormatBase: split: 2->d8g055.nhncorp.com:000000000003678,
09/03/16 16:34:30 INFO mapred.JobClient: Running job: job_200902131649_0050
09/03/16 16:34:31 INFO mapred.JobClient:  map 0% reduce 0%
09/03/16 16:45:05 INFO mapred.JobClient: Task Id : attempt_200902131649_0050_m_000002_0, Status : FAILED
Task attempt_200902131649_0050_m_000002_0 failed to report status for 600 seconds. Killing!


> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>            Reporter: Edward J. Yoon
>            Assignee: Edward J. Yoon
>         Attachments: HAMA-158.patch
>
>


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[jira] Commented: (HAMA-158) Implementation of random sparse matrix using mapreduce

Posted by "Edward J. Yoon (JIRA)" <ji...@apache.org>.
    [ https://issues.apache.org/jira/browse/HAMA-158?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=12695948#action_12695948 ] 

Edward J. Yoon commented on HAMA-158:
-------------------------------------

The each map spend too long time. Iterative method is one way to fix this problem.

> Implementation of random sparse matrix using mapreduce
> ------------------------------------------------------
>
>                 Key: HAMA-158
>                 URL: https://issues.apache.org/jira/browse/HAMA-158
>             Project: Hama
>          Issue Type: Sub-task
>            Reporter: Edward J. Yoon
>            Assignee: Edward J. Yoon
>         Attachments: HAMA-158.patch
>
>


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