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Posted to dev@taverna.apache.org by Mark Fortner <ph...@gmail.com> on 2018/02/17 00:17:15 UTC
Swagger & Taverna
I'm curious if there's a way to incorporate Swagger REST service metadata
into a workflow? For example, you could add ontology URIs to parts of the
Swagger metadata, which Taverna could then consume and expose. This would
make it easier to orchestrate REST service-based workflows.
Regards,
Mark Fortner
RE: Swagger & Taverna
Posted by Mark Fortner <ph...@gmail.com>.
You could extend the same basic principle of semantic annotations to
relational databases. You can use the column's 'comments' field to store an
ontology reference. You would just need to be able to consume it when you
write JDBC queries.
Mark
On 19 Feb 2018 3:43 am, "Ian Dunlop" <ia...@gmail.com> wrote:
> Hello,
>
> That sounds like a really interesting idea. I wonder if it could be a
> generalised approach as well for annotating swagger docs so that
> taverna/CWL/knime/PP etc could use them. Maybe that exists already?
>
> Cheers,
>
> Ian
>
> Sent from Mail for Windows 10
>
> From: Stian Soiland-Reyes
> Sent: 18 February 2018 17:50
> To: dev@taverna.incubator.apache.org
> Subject: Re: Swagger & Taverna
>
> I think consuming Swagger APIs for building pre-configured REST
> service activities in Taverna is indeed a good idea - we've already
> got similar for WSDL/SOAP - should we propose this as a potential GSOC
> project? Would need a mentor..
>
> On 17 February 2018 at 00:17, Mark Fortner <ph...@gmail.com> wrote:
> > I'm curious if there's a way to incorporate Swagger REST service metadata
> > into a workflow? For example, you could add ontology URIs to parts of the
> > Swagger metadata, which Taverna could then consume and expose. This would
> > make it easier to orchestrate REST service-based workflows.
> >
> > Regards,
> >
> > Mark Fortner
>
>
>
> --
> Stian Soiland-Reyes
> http://orcid.org/0000-0001-9842-9718
>
>
RE: Swagger & Taverna
Posted by Ian Dunlop <ia...@gmail.com>.
Hello,
That sounds like a really interesting idea. I wonder if it could be a generalised approach as well for annotating swagger docs so that taverna/CWL/knime/PP etc could use them. Maybe that exists already?
Cheers,
Ian
Sent from Mail for Windows 10
From: Stian Soiland-Reyes
Sent: 18 February 2018 17:50
To: dev@taverna.incubator.apache.org
Subject: Re: Swagger & Taverna
I think consuming Swagger APIs for building pre-configured REST
service activities in Taverna is indeed a good idea - we've already
got similar for WSDL/SOAP - should we propose this as a potential GSOC
project? Would need a mentor..
On 17 February 2018 at 00:17, Mark Fortner <ph...@gmail.com> wrote:
> I'm curious if there's a way to incorporate Swagger REST service metadata
> into a workflow? For example, you could add ontology URIs to parts of the
> Swagger metadata, which Taverna could then consume and expose. This would
> make it easier to orchestrate REST service-based workflows.
>
> Regards,
>
> Mark Fortner
--
Stian Soiland-Reyes
http://orcid.org/0000-0001-9842-9718
Re: Swagger & Taverna
Posted by Stian Soiland-Reyes <st...@apache.org>.
I think consuming Swagger APIs for building pre-configured REST
service activities in Taverna is indeed a good idea - we've already
got similar for WSDL/SOAP - should we propose this as a potential GSOC
project? Would need a mentor..
On 17 February 2018 at 00:17, Mark Fortner <ph...@gmail.com> wrote:
> I'm curious if there's a way to incorporate Swagger REST service metadata
> into a workflow? For example, you could add ontology URIs to parts of the
> Swagger metadata, which Taverna could then consume and expose. This would
> make it easier to orchestrate REST service-based workflows.
>
> Regards,
>
> Mark Fortner
--
Stian Soiland-Reyes
http://orcid.org/0000-0001-9842-9718