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Posted to commits@beam.apache.org by "ASF GitHub Bot (JIRA)" <ji...@apache.org> on 2017/12/12 17:24:00 UTC
[jira] [Commented] (BEAM-981) Not possible to directly submit a
pipeline on spark cluster
[ https://issues.apache.org/jira/browse/BEAM-981?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16287942#comment-16287942 ]
ASF GitHub Bot commented on BEAM-981:
-------------------------------------
lgajowy opened a new pull request #4246: [BEAM-981] Add parameter allowing adding jars to spark context
URL: https://github.com/apache/beam/pull/4246
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---
This is a PR for BEAM-981. I hope that's ok to submit this PR because the 981 issue seems to be abandoned. Another reason to post this is that this PR also (partially) solves BEAM-1603: by adding appropriate test.jar and shaded.jar file to Spark's classpath (using SparkConfs `addJar()`) we are able to run the IOITs on Spark cluster without the spark-submit tool. This in turn makes it possible to run the tests using PerfKit Benchmarker Tool easily, so it's quite crucial to us.
@lukecwik could you review this, as you seem to know the topic well?
@jbonofre does this change interfere in any way with migrating spark to 2.x version?
@jasonkuster fyi :)
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> Not possible to directly submit a pipeline on spark cluster
> -----------------------------------------------------------
>
> Key: BEAM-981
> URL: https://issues.apache.org/jira/browse/BEAM-981
> Project: Beam
> Issue Type: Bug
> Components: runner-spark
> Affects Versions: 0.6.0
> Reporter: Jean-Baptiste Onofré
> Assignee: Kobi Salant
>
> It's not possible to directly run a pipeline on the spark runner (for instance using {{mvn exec:java}}. It fails with:
> {code}
> [appclient-register-master-threadpool-0] INFO org.apache.spark.deploy.client.AppClient$ClientEndpoint - Connecting to master spark://10.200.118.197:7077...
> [shuffle-client-0] ERROR org.apache.spark.network.client.TransportClient - Failed to send RPC 6813731522650020739 to /10.200.118.197:7077: java.lang.AbstractMethodError: org.apache.spark.network.protocol.MessageWithHeader.touch(Ljava/lang/Object;)Lio/netty/util/ReferenceCounted;
> java.lang.AbstractMethodError: org.apache.spark.network.protocol.MessageWithHeader.touch(Ljava/lang/Object;)Lio/netty/util/ReferenceCounted;
> at io.netty.util.ReferenceCountUtil.touch(ReferenceCountUtil.java:73)
> at io.netty.channel.DefaultChannelPipeline.touch(DefaultChannelPipeline.java:107)
> at io.netty.channel.AbstractChannelHandlerContext.write(AbstractChannelHandlerContext.java:820)
> at io.netty.channel.AbstractChannelHandlerContext.write(AbstractChannelHandlerContext.java:733)
> at io.netty.handler.codec.MessageToMessageEncoder.write(MessageToMessageEncoder.java:111)
> at io.netty.channel.AbstractChannelHandlerContext.invokeWrite0(AbstractChannelHandlerContext.java:748)
> at io.netty.channel.AbstractChannelHandlerContext.invokeWrite(AbstractChannelHandlerContext.java:740)
> at io.netty.channel.AbstractChannelHandlerContext.write(AbstractChannelHandlerContext.java:826)
> at io.netty.channel.AbstractChannelHandlerContext.write(AbstractChannelHandlerContext.java:733)
> at io.netty.handler.timeout.IdleStateHandler.write(IdleStateHandler.java:284)
> at io.netty.channel.AbstractChannelHandlerContext.invokeWrite0(AbstractChannelHandlerContext.java:748)
> at io.netty.channel.AbstractChannelHandlerContext.invokeWrite(AbstractChannelHandlerContext.java:740)
> at io.netty.channel.AbstractChannelHandlerContext.access$1900(AbstractChannelHandlerContext.java:38)
> at io.netty.channel.AbstractChannelHandlerContext$AbstractWriteTask.write(AbstractChannelHandlerContext.java:1101)
> at io.netty.channel.AbstractChannelHandlerContext$WriteAndFlushTask.write(AbstractChannelHandlerContext.java:1148)
> at io.netty.channel.AbstractChannelHandlerContext$AbstractWriteTask.run(AbstractChannelHandlerContext.java:1090)
> at io.netty.util.concurrent.SingleThreadEventExecutor.safeExecute(SingleThreadEventExecutor.java:451)
> at io.netty.util.concurrent.SingleThreadEventExecutor.runAllTasks(SingleThreadEventExecutor.java:418)
> at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:401)
> at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:877)
> at java.lang.Thread.run(Thread.java:745)
> [appclient-register-master-threadpool-0] WARN org.apache.spark.deploy.client.AppClient$ClientEndpoint - Failed to connect to master 10.200.118.197:7077
> java.io.IOException: Failed to send RPC 6813731522650020739 to /10.200.118.197:7077: java.lang.AbstractMethodError: org.apache.spark.network.protocol.MessageWithHeader.touch(Ljava/lang/Object;)Lio/netty/util/ReferenceCounted;
> at org.apache.spark.network.client.TransportClient$3.operationComplete(TransportClient.java:239)
> at org.apache.spark.network.client.TransportClient$3.operationComplete(TransportClient.java:226)
> at io.netty.util.concurrent.DefaultPromise.notifyListener0(DefaultPromise.java:514)
> at io.netty.util.concurrent.DefaultPromise.notifyListeners0(DefaultPromise.java:507)
> at io.netty.util.concurrent.DefaultPromise.notifyListenersNow(DefaultPromise.java:486)
> at io.netty.util.concurrent.DefaultPromise.notifyListeners(DefaultPromise.java:427)
> at io.netty.util.concurrent.DefaultPromise.tryFailure(DefaultPromise.java:129)
> at io.netty.channel.AbstractChannelHandlerContext.notifyOutboundHandlerException(AbstractChannelHandlerContext.java:845)
> at io.netty.channel.AbstractChannelHandlerContext.invokeWrite0(AbstractChannelHandlerContext.java:750)
> at io.netty.channel.AbstractChannelHandlerContext.invokeWrite(AbstractChannelHandlerContext.java:740)
> at io.netty.channel.AbstractChannelHandlerContext.write(AbstractChannelHandlerContext.java:826)
> at io.netty.channel.AbstractChannelHandlerContext.write(AbstractChannelHandlerContext.java:733)
> at io.netty.handler.timeout.IdleStateHandler.write(IdleStateHandler.java:284)
> at io.netty.channel.AbstractChannelHandlerContext.invokeWrite0(AbstractChannelHandlerContext.java:748)
> at io.netty.channel.AbstractChannelHandlerContext.invokeWrite(AbstractChannelHandlerContext.java:740)
> at io.netty.channel.AbstractChannelHandlerContext.access$1900(AbstractChannelHandlerContext.java:38)
> at io.netty.channel.AbstractChannelHandlerContext$AbstractWriteTask.write(AbstractChannelHandlerContext.java:1101)
> at io.netty.channel.AbstractChannelHandlerContext$WriteAndFlushTask.write(AbstractChannelHandlerContext.java:1148)
> at io.netty.channel.AbstractChannelHandlerContext$AbstractWriteTask.run(AbstractChannelHandlerContext.java:1090)
> at io.netty.util.concurrent.SingleThreadEventExecutor.safeExecute(SingleThreadEventExecutor.java:451)
> at io.netty.util.concurrent.SingleThreadEventExecutor.runAllTasks(SingleThreadEventExecutor.java:418)
> at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:401)
> at io.netty.util.concurrent.SingleThreadEventExecutor$5.run(SingleThreadEventExecutor.java:877)
> at java.lang.Thread.run(Thread.java:745)
> Caused by: java.lang.AbstractMethodError: org.apache.spark.network.protocol.MessageWithHeader.touch(Ljava/lang/Object;)Lio/netty/util/ReferenceCounted;
> at io.netty.util.ReferenceCountUtil.touch(ReferenceCountUtil.java:73)
> at io.netty.channel.DefaultChannelPipeline.touch(DefaultChannelPipeline.java:107)
> at io.netty.channel.AbstractChannelHandlerContext.write(AbstractChannelHandlerContext.java:820)
> at io.netty.channel.AbstractChannelHandlerContext.write(AbstractChannelHandlerContext.java:733)
> at io.netty.handler.codec.MessageToMessageEncoder.write(MessageToMessageEncoder.java:111)
> at io.netty.channel.AbstractChannelHandlerContext.invokeWrite0(AbstractChannelHandlerContext.java:748)
> ... 15 more
> {code}
> It looks like a conflict between the Netty version used in Spark and the one in Beam (just guessing).
> The workaround is to use {{spark-submit}}.
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