You are viewing a plain text version of this content. The canonical link for it is here.
Posted to jira@arrow.apache.org by "Jonathan Keane (Jira)" <ji...@apache.org> on 2021/09/07 14:53:00 UTC

[jira] [Resolved] (ARROW-12981) [R] Install source package from CRAN alone

     [ https://issues.apache.org/jira/browse/ARROW-12981?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Jonathan Keane resolved ARROW-12981.
------------------------------------
    Resolution: Fixed

Issue resolved by pull request 11001
[https://github.com/apache/arrow/pull/11001]

> [R] Install source package from CRAN alone
> ------------------------------------------
>
>                 Key: ARROW-12981
>                 URL: https://issues.apache.org/jira/browse/ARROW-12981
>             Project: Apache Arrow
>          Issue Type: Wish
>          Components: Packaging, R
>    Affects Versions: 4.0.1
>         Environment: Linux
>            Reporter: Karl Dunkle Werner
>            Assignee: Neal Richardson
>            Priority: Major
>              Labels: pull-request-available
>             Fix For: 6.0.0
>
>          Time Spent: 23h 10m
>  Remaining Estimate: 0h
>
> Hello,
> I would like to install {{Arrow}} on Linux using only CRAN, without downloading additional files from Github, Apache, or Ursa Labs. I understand this is a big ask, and might not be a priority for you all. Feel free to close if you feel that this is out of scope.
> Why is a CRAN-only installation useful?
>  # It's common for organizations to set up firewalls that prevent arbitrary downloads, but allow access to their own internal CRAN mirror.
>  ** Sometimes these firewalls also allow requests to Github, but often not.
>  # On a broader level, my favorite thing about R is CRAN, the CRAN maintainers, and their [policy|https://cran.r-project.org/web/packages/policies.html#Source-packages] that "Source packages may not contain any form of binary executable code." By distributing most of the Arrow code separately (either as source C++ or a compiled library), automated code archives and other source-based tools become much less useful.
> Of course, {{arrow}} isn't the only R package to depend on external libraries or distribute code separately. If a CRAN-only approach isn't viable, it would still be useful to have an all-offline method. I'm also having trouble getting an offline install to work, even with a local copy of the Arrow repo. (See the bottom of the script below.)
>  
> What does does installing offline look like now?
>  Here's a bash script that approximates installing behind a firewall.
> {code:sh}
> git clone --depth 1 git@github.com:apache/arrow.git test_arrow
> cd test_arrow
> wget 'https://cran.r-project.org/src/contrib/arrow_4.0.1.tar.gz'
> # Set up a temporary R library (optional)
> mkdir test_r_lib
> export R_LIBS_USER=test_r_lib
> export ARROW_R_DEV=true
> export LIBARROW_MINIMAL=false
> export LIBARROW_DOWNLOAD=false
> export LIBARROW_BINARY=false
> export LIBARROW_BUILD=true
> # These are all of the direct dependencies, including Suggests
> # This isn't required if the packages are already installed
> Rscript -e "install.packages(c('assertthat', 'bit64', 'purrr', 'R6', 'rlang', 'tidyselect', 'vctrs', 'cpp11', 'decor', 'distro', 'dplyr', 'hms', 'knitr', 'lubridate', 'pkgload', 'reticulate', 'rmarkdown', 'stringr', 'testthat', 'tibble', 'withr'))"
> # Disable your internet connection here.
> # Now try to install the R package we downloaded with wget.
> # This is an approximation of being behind a firewall.
> Rscript -e 'install.packages("arrow_4.0.1.tar.gz", repos=NULL)'
> # It successfully installs the R component, but not the C++ library, 
> # even with LIBARROW_BUILD=true
> Rscript -e "arrow::arrow_available()"
> # [1] FALSE
> # As mentioned in the installation vignette, 
> # we can R CMD INSTALL in the git repo.
> R CMD INSTALL r
> # This will try to build the C++ library, but fails when mimalloc and 
> # jemalloc can't be downloaded from Github.
> # (Seems not to be affected by LIBARROW_DOWNLOAD=false).
> # When C++ compilation fails, the R component still installs.
> {code}



--
This message was sent by Atlassian Jira
(v8.3.4#803005)