Ctakes-data-vis

[John Green <jo...@gmail.com>]

Had to refresh my svn skills as its been years. As a result not much cleaning up got done Andy/Pei. The code is solid though and I sent four different ways to view the json up too; collapsable dendrogram is the most useful.


The script could easily be re written to iterate through a directory as its in the form of a simple class. Also, it should take command line args. Im out of time this weekend, even for the ten minutes that would take, but I can do both next weekend. 


Let me know if its useful at all Andy or if you need tweaks on anything to make it useful for whatever demo u have in mind, id be happy to as time permits.


Hope to make more significant contributions to this wonderful project sometime in the next year,
Jg
—
Sent from Mailbox for iPhone

Re: Ctakes-data-vis

[vijay garla <vn...@gmail.com>]

I think one major issue with ctakes in a web server is thread safety.  I
know that LVG is not thread safe, and it isn't clear what the status is on
other components.


On Tue, Apr 29, 2014 at 9:20 AM, John Green <jo...@gmail.com>wrote:

> Pei - I meant as a web app, can we keep the credentials loaded and the
> resources (more importantly) loaded in memory accross runs? E.g. Treat it
> like a que with the machinery already loaded and fed? Im sure this can be
> done, I just run ctakes from CPE right now and havent toyed with this so
> wasnt sure.
>
>
> Where is this at? Is anyone developing the front end? I might be able to
> invest some time into the easily.
>
>
>
>
> Jg
> —
> Sent from Mailbox for iPhone
>
> On Wed, Apr 16, 2014 at 12:23 PM, Chen, Pei
> <Pe...@childrens.harvard.edu> wrote:
>
> > John,
> > How we use the VM is up to us to decide.  For an online demo,
> > We can certainly load up cTAKES and it's resources.
> > If it's a web app, we can prompt the user to enter umls credentials if
> they choose the umls resources?
> > --Pei
> >> -----Original Message-----
> >> From: John Green [mailto:john.travis.green@gmail.com]
> >> Sent: Sunday, April 13, 2014 9:16 PM
> >> To: dev@ctakes.apache.org
> >> Subject: Re: Ctakes-data-vis
> >>
> >> Great! Ill try and fix that soon. Im back on the wards so time is slim.
> >>
> >>
> >> What are the next steps for the vm? For the demo site?
> >>
> >>
> >>
> >>
> >> Out of curiosity, would this allow resources to stay loaded and a kind
> of que
> >> be setup? Is there a solution that allows to do this now? That is, the
> >> resources stay loaded in mem, the umls auth stays current, and I could
> just
> >> pass content as it becomes available?
> >>
> >>
> >>
> >>
> >> Jg
> >> —
> >> Sent from Mailbox for iPhone
> >>
> >> On Sat, Apr 12, 2014 at 2:57 PM, andy mcmurry <mc...@gmail.com>
> >> wrote:
> >>
> >> > It looks great! The transitions are smooth and the hierarchical
> >> > browsing is straightforward. The only edit I recommend I have is about
> >> > spacing -- The information often exceeds the space of a single page.
> >> > On Sat, Apr 5, 2014 at 12:13 PM, John Green
> >> <jo...@gmail.com>wrote:
> >> >> Had to refresh my svn skills as its been years. As a result not much
> >> >> cleaning up got done Andy/Pei. The code is solid though and I sent
> >> >> four different ways to view the json up too; collapsable dendrogram
> >> >> is the most useful.
> >> >>
> >> >>
> >> >> The script could easily be re written to iterate through a directory
> >> >> as its in the form of a simple class. Also, it should take command
> line args.
> >> >> Im out of time this weekend, even for the ten minutes that would
> >> >> take, but I can do both next weekend.
> >> >>
> >> >>
> >> >> Let me know if its useful at all Andy or if you need tweaks on
> >> >> anything to make it useful for whatever demo u have in mind, id be
> >> >> happy to as time permits.
> >> >>
> >> >>
> >> >> Hope to make more significant contributions to this wonderful project
> >> >> sometime in the next year, Jg
> >> >> --
> >> >> Sent from Mailbox for iPhone

RE: Ctakes-data-vis

[John Green <jo...@gmail.com>]

Pei - I meant as a web app, can we keep the credentials loaded and the resources (more importantly) loaded in memory accross runs? E.g. Treat it like a que with the machinery already loaded and fed? Im sure this can be done, I just run ctakes from CPE right now and havent toyed with this so wasnt sure.


Where is this at? Is anyone developing the front end? I might be able to invest some time into the easily. 




Jg
—
Sent from Mailbox for iPhone

On Wed, Apr 16, 2014 at 12:23 PM, Chen, Pei
<Pe...@childrens.harvard.edu> wrote:

> John,
> How we use the VM is up to us to decide.  For an online demo,
> We can certainly load up cTAKES and it's resources.  
> If it's a web app, we can prompt the user to enter umls credentials if they choose the umls resources?
> --Pei
>> -----Original Message-----
>> From: John Green [mailto:john.travis.green@gmail.com]
>> Sent: Sunday, April 13, 2014 9:16 PM
>> To: dev@ctakes.apache.org
>> Subject: Re: Ctakes-data-vis
>> 
>> Great! Ill try and fix that soon. Im back on the wards so time is slim.
>> 
>> 
>> What are the next steps for the vm? For the demo site?
>> 
>> 
>> 
>> 
>> Out of curiosity, would this allow resources to stay loaded and a kind of que
>> be setup? Is there a solution that allows to do this now? That is, the
>> resources stay loaded in mem, the umls auth stays current, and I could just
>> pass content as it becomes available?
>> 
>> 
>> 
>> 
>> Jg
>> —
>> Sent from Mailbox for iPhone
>> 
>> On Sat, Apr 12, 2014 at 2:57 PM, andy mcmurry <mc...@gmail.com>
>> wrote:
>> 
>> > It looks great! The transitions are smooth and the hierarchical
>> > browsing is straightforward. The only edit I recommend I have is about
>> > spacing -- The information often exceeds the space of a single page.
>> > On Sat, Apr 5, 2014 at 12:13 PM, John Green
>> <jo...@gmail.com>wrote:
>> >> Had to refresh my svn skills as its been years. As a result not much
>> >> cleaning up got done Andy/Pei. The code is solid though and I sent
>> >> four different ways to view the json up too; collapsable dendrogram
>> >> is the most useful.
>> >>
>> >>
>> >> The script could easily be re written to iterate through a directory
>> >> as its in the form of a simple class. Also, it should take command line args.
>> >> Im out of time this weekend, even for the ten minutes that would
>> >> take, but I can do both next weekend.
>> >>
>> >>
>> >> Let me know if its useful at all Andy or if you need tweaks on
>> >> anything to make it useful for whatever demo u have in mind, id be
>> >> happy to as time permits.
>> >>
>> >>
>> >> Hope to make more significant contributions to this wonderful project
>> >> sometime in the next year, Jg
>> >> --
>> >> Sent from Mailbox for iPhone

RE: Ctakes-data-vis

["Chen, Pei" <Pe...@childrens.harvard.edu>]

John,
How we use the VM is up to us to decide.  For an online demo,
We can certainly load up cTAKES and it's resources.  
If it's a web app, we can prompt the user to enter umls credentials if they choose the umls resources?

--Pei

> -----Original Message-----
> From: John Green [mailto:john.travis.green@gmail.com]
> Sent: Sunday, April 13, 2014 9:16 PM
> To: dev@ctakes.apache.org
> Subject: Re: Ctakes-data-vis
> 
> Great! Ill try and fix that soon. Im back on the wards so time is slim.
> 
> 
> What are the next steps for the vm? For the demo site?
> 
> 
> 
> 
> Out of curiosity, would this allow resources to stay loaded and a kind of que
> be setup? Is there a solution that allows to do this now? That is, the
> resources stay loaded in mem, the umls auth stays current, and I could just
> pass content as it becomes available?
> 
> 
> 
> 
> Jg
> —
> Sent from Mailbox for iPhone
> 
> On Sat, Apr 12, 2014 at 2:57 PM, andy mcmurry <mc...@gmail.com>
> wrote:
> 
> > It looks great! The transitions are smooth and the hierarchical
> > browsing is straightforward. The only edit I recommend I have is about
> > spacing -- The information often exceeds the space of a single page.
> > On Sat, Apr 5, 2014 at 12:13 PM, John Green
> <jo...@gmail.com>wrote:
> >> Had to refresh my svn skills as its been years. As a result not much
> >> cleaning up got done Andy/Pei. The code is solid though and I sent
> >> four different ways to view the json up too; collapsable dendrogram
> >> is the most useful.
> >>
> >>
> >> The script could easily be re written to iterate through a directory
> >> as its in the form of a simple class. Also, it should take command line args.
> >> Im out of time this weekend, even for the ten minutes that would
> >> take, but I can do both next weekend.
> >>
> >>
> >> Let me know if its useful at all Andy or if you need tweaks on
> >> anything to make it useful for whatever demo u have in mind, id be
> >> happy to as time permits.
> >>
> >>
> >> Hope to make more significant contributions to this wonderful project
> >> sometime in the next year, Jg
> >> --
> >> Sent from Mailbox for iPhone

Re: Ctakes-data-vis

[John Green <jo...@gmail.com>]

Great! Ill try and fix that soon. Im back on the wards so time is slim.


What are the next steps for the vm? For the demo site? 




Out of curiosity, would this allow resources to stay loaded and a kind of que be setup? Is there a solution that allows to do this now? That is, the resources stay loaded in mem, the umls auth stays current, and I could just pass content as it becomes available? 




Jg
—
Sent from Mailbox for iPhone

On Sat, Apr 12, 2014 at 2:57 PM, andy mcmurry <mc...@gmail.com>
wrote:

> It looks great! The transitions are smooth and the hierarchical browsing is
> straightforward. The only edit I recommend I have is about spacing -- The
> information often exceeds the space of a single page.
> On Sat, Apr 5, 2014 at 12:13 PM, John Green <jo...@gmail.com>wrote:
>> Had to refresh my svn skills as its been years. As a result not much
>> cleaning up got done Andy/Pei. The code is solid though and I sent four
>> different ways to view the json up too; collapsable dendrogram is the most
>> useful.
>>
>>
>> The script could easily be re written to iterate through a directory as
>> its in the form of a simple class. Also, it should take command line args.
>> Im out of time this weekend, even for the ten minutes that would take, but
>> I can do both next weekend.
>>
>>
>> Let me know if its useful at all Andy or if you need tweaks on anything to
>> make it useful for whatever demo u have in mind, id be happy to as time
>> permits.
>>
>>
>> Hope to make more significant contributions to this wonderful project
>> sometime in the next year,
>> Jg
>> --
>> Sent from Mailbox for iPhone

Re: Ctakes-data-vis

[andy mcmurry <mc...@gmail.com>]

It looks great! The transitions are smooth and the hierarchical browsing is
straightforward. The only edit I recommend I have is about spacing -- The
information often exceeds the space of a single page.


On Sat, Apr 5, 2014 at 12:13 PM, John Green <jo...@gmail.com>wrote:

> Had to refresh my svn skills as its been years. As a result not much
> cleaning up got done Andy/Pei. The code is solid though and I sent four
> different ways to view the json up too; collapsable dendrogram is the most
> useful.
>
>
> The script could easily be re written to iterate through a directory as
> its in the form of a simple class. Also, it should take command line args.
> Im out of time this weekend, even for the ten minutes that would take, but
> I can do both next weekend.
>
>
> Let me know if its useful at all Andy or if you need tweaks on anything to
> make it useful for whatever demo u have in mind, id be happy to as time
> permits.
>
>
> Hope to make more significant contributions to this wonderful project
> sometime in the next year,
> Jg
> --
> Sent from Mailbox for iPhone