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Posted to user@spark.apache.org by fanooos <de...@gmail.com> on 2015/03/03 07:49:32 UTC
Spark SQL Thrift Server start exception :
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
I have installed a hadoop cluster (version : 2.6.0), apache spark (version :
1.2.1 preBuilt for hadoop 2.4 and later), and hive (version 1.0.0).
When I try to start the spark sql thrift server I am getting the following
exception.
Exception in thread "main" java.lang.RuntimeException:
java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.metastore.HiveMetaStoreClient
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346)
at
org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:235)
at
org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:231)
at scala.Option.orElse(Option.scala:257)
at
org.apache.spark.sql.hive.HiveContext.x$3$lzycompute(HiveContext.scala:231)
at org.apache.spark.sql.hive.HiveContext.x$3(HiveContext.scala:229)
at
org.apache.spark.sql.hive.HiveContext.hiveconf$lzycompute(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.hiveconf(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:292)
at org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276)
at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:248)
at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:91)
at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:90)
at
scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
at org.apache.spark.sql.SQLContext.<init>(SQLContext.scala:90)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:72)
at
org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:51)
at
org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:56)
at
org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.metastore.HiveMetaStoreClient
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:62)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2465)
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:340)
... 26 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1410)
... 31 more
Caused by: javax.jdo.JDOFatalUserException: Class
org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
NestedThrowables:
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:310)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:339)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:248)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:223)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:58)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:67)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:497)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:475)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:523)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:397)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:356)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:54)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:59)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4944)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:171)
... 36 more
Caused by: java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:274)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.forName(JDOHelper.java:2015)
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162)
... 55 more
As I understand from the exception, the datanucleus jars is not in the
ClassPath so I added the following line to my .profile
export $SPARK_OPTS="-Djava.library.path=$SPARK_HOME/lib"
but the same exception still thrown and the server does not run.
How can I solve this issue ?
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Re: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
Posted by Anusha Shamanur <an...@gmail.com>.
I downloaded different versions of the jars and it worked.
Thanks!
On Tue, Mar 3, 2015 at 4:45 PM, Cheng, Hao <ha...@intel.com> wrote:
> Which version / distribution are you using? Please references this blog
> that Felix C posted if you’re running on CDH.
>
>
> http://eradiating.wordpress.com/2015/02/22/getting-hivecontext-to-work-in-cdh/
>
>
>
> Or you may also need to download the datanucleus*.jar files try to add the
> option of “--jars” while starting the spark shell.
>
>
>
> *From:* Anusha Shamanur [mailto:anushasb11@gmail.com]
> *Sent:* Wednesday, March 4, 2015 5:07 AM
> *To:* Cheng, Hao
> *Subject:* Re: Spark SQL Thrift Server start exception :
> java.lang.ClassNotFoundException:
> org.datanucleus.api.jdo.JDOPersistenceManagerFactory
>
>
>
> Hi,
>
>
>
> I am getting the same error. There is no lib folder in my $SPARK_HOME. But
> I included these jars while calling spark-shell.
>
>
>
> Now, I get this:
>
> Caused by: org.datanucleus.exceptions.ClassNotResolvedException: Class
> "org.datanucleus.store.rdbms.RDBMSStoreManager" was not found in the
> CLASSPATH. Please check your specification and your CLASSPATH.
>
> at
> org.datanucleus.ClassLoaderResolverImpl.classForName(ClassLoaderResolverImpl.java:218)
>
>
>
> How do I solve this?
>
>
>
> On Mon, Mar 2, 2015 at 11:04 PM, Cheng, Hao <ha...@intel.com> wrote:
>
> Copy those jars into the $SPARK_HOME/lib/
>
> datanucleus-api-jdo-3.2.6.jar
> datanucleus-core-3.2.10.jar
> datanucleus-rdbms-3.2.9.jar
>
> see
> https://github.com/apache/spark/blob/master/bin/compute-classpath.sh#L120
>
>
>
> -----Original Message-----
> From: fanooos [mailto:dev.fanooos@gmail.com]
> Sent: Tuesday, March 3, 2015 2:50 PM
> To: user@spark.apache.org
> Subject: Spark SQL Thrift Server start exception :
> java.lang.ClassNotFoundException:
> org.datanucleus.api.jdo.JDOPersistenceManagerFactory
>
> I have installed a hadoop cluster (version : 2.6.0), apache spark (version
> :
> 1.2.1 preBuilt for hadoop 2.4 and later), and hive (version 1.0.0).
>
> When I try to start the spark sql thrift server I am getting the following
> exception.
>
> Exception in thread "main" java.lang.RuntimeException:
> java.lang.RuntimeException: Unable to instantiate
> org.apache.hadoop.hive.metastore.HiveMetaStoreClient
> at
> org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346)
> at
>
> org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:235)
> at
>
> org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:231)
> at scala.Option.orElse(Option.scala:257)
> at
> org.apache.spark.sql.hive.HiveContext.x$3$lzycompute(HiveContext.scala:231)
> at org.apache.spark.sql.hive.HiveContext.x$3(HiveContext.scala:229)
> at
>
> org.apache.spark.sql.hive.HiveContext.hiveconf$lzycompute(HiveContext.scala:229)
> at
> org.apache.spark.sql.hive.HiveContext.hiveconf(HiveContext.scala:229)
> at
> org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:292)
> at
> org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276)
> at
> org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:248)
> at
> org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:91)
> at
> org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:90)
> at
>
> scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
> at
> scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
> at org.apache.spark.sql.SQLContext.<init>(SQLContext.scala:90)
> at
> org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:72)
> at
>
> org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:51)
> at
>
> org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:56)
> at
>
> org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at
>
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
> at
>
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.lang.reflect.Method.invoke(Method.java:606)
> at
> org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358)
> at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75)
> at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
> Caused by: java.lang.RuntimeException: Unable to instantiate
> org.apache.hadoop.hive.metastore.HiveMetaStoreClient
> at
>
> org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412)
> at
>
> org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:62)
> at
>
> org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72)
> at
>
> org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453)
> at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2465)
> at
> org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:340)
> ... 26 more
> Caused by: java.lang.reflect.InvocationTargetException
> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native
> Method)
> at
>
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
> at
>
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
> at
>
> org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1410)
> ... 31 more
> Caused by: javax.jdo.JDOFatalUserException: Class
> org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
> NestedThrowables:
> java.lang.ClassNotFoundException:
> org.datanucleus.api.jdo.JDOPersistenceManagerFactory
> at
>
> javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175)
> at
> javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
> at
> javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
> at
> org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:310)
> at
>
> org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:339)
> at
>
> org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:248)
> at
> org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:223)
> at
> org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
> at
>
> org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
> at
>
> org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:58)
> at
>
> org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:67)
> at
>
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:497)
> at
>
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:475)
> at
>
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:523)
> at
>
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:397)
> at
>
> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:356)
> at
>
> org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:54)
> at
>
> org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:59)
> at
>
> org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4944)
> at
>
> org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:171)
> ... 36 more
> Caused by: java.lang.ClassNotFoundException:
> org.datanucleus.api.jdo.JDOPersistenceManagerFactory
> at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
> at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
> at java.security.AccessController.doPrivileged(Native Method)
> at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
> at java.lang.Class.forName0(Native Method)
> at java.lang.Class.forName(Class.java:274)
> at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018)
> at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016)
> at java.security.AccessController.doPrivileged(Native Method)
> at javax.jdo.JDOHelper.forName(JDOHelper.java:2015)
> at
>
> javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162)
> ... 55 more
>
> As I understand from the exception, the datanucleus jars is not in the
> ClassPath so I added the following line to my .profile
>
> export $SPARK_OPTS="-Djava.library.path=$SPARK_HOME/lib"
>
> but the same exception still thrown and the server does not run.
>
> How can I solve this issue ?
>
>
>
> --
> View this message in context:
> http://apache-spark-user-list.1001560.n3.nabble.com/Spark-SQL-Thrift-Server-start-exception-java-lang-ClassNotFoundException-org-datanucleus-api-jdo-JDOy-tp21887.html
> Sent from the Apache Spark User List mailing list archive at Nabble.com.
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: user-unsubscribe@spark.apache.org For additional
> commands, e-mail: user-help@spark.apache.org
>
>
> ---------------------------------------------------------------------
> To unsubscribe, e-mail: user-unsubscribe@spark.apache.org
> For additional commands, e-mail: user-help@spark.apache.org
>
>
>
>
>
> --
>
> Regards,
>
> Anusha
>
--
Regards,
Anusha
RE: Spark SQL Thrift Server start exception :
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
Posted by "Cheng, Hao" <ha...@intel.com>.
Which version / distribution are you using? Please references this blog that Felix C posted if you’re running on CDH.
http://eradiating.wordpress.com/2015/02/22/getting-hivecontext-to-work-in-cdh/
Or you may also need to download the datanucleus*.jar files try to add the option of “--jars” while starting the spark shell.
From: Anusha Shamanur [mailto:anushasb11@gmail.com]
Sent: Wednesday, March 4, 2015 5:07 AM
To: Cheng, Hao
Subject: Re: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory
Hi,
I am getting the same error. There is no lib folder in my $SPARK_HOME. But I included these jars while calling spark-shell.
Now, I get this:
Caused by: org.datanucleus.exceptions.ClassNotResolvedException: Class "org.datanucleus.store.rdbms.RDBMSStoreManager" was not found in the CLASSPATH. Please check your specification and your CLASSPATH.
at org.datanucleus.ClassLoaderResolverImpl.classForName(ClassLoaderResolverImpl.java:218)
How do I solve this?
On Mon, Mar 2, 2015 at 11:04 PM, Cheng, Hao <ha...@intel.com>> wrote:
Copy those jars into the $SPARK_HOME/lib/
datanucleus-api-jdo-3.2.6.jar
datanucleus-core-3.2.10.jar
datanucleus-rdbms-3.2.9.jar
see https://github.com/apache/spark/blob/master/bin/compute-classpath.sh#L120
-----Original Message-----
From: fanooos [mailto:dev.fanooos@gmail.com<ma...@gmail.com>]
Sent: Tuesday, March 3, 2015 2:50 PM
To: user@spark.apache.org<ma...@spark.apache.org>
Subject: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory
I have installed a hadoop cluster (version : 2.6.0), apache spark (version :
1.2.1 preBuilt for hadoop 2.4 and later), and hive (version 1.0.0).
When I try to start the spark sql thrift server I am getting the following exception.
Exception in thread "main" java.lang.RuntimeException:
java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346)
at
org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:235)
at
org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:231)
at scala.Option.orElse(Option.scala:257)
at
org.apache.spark.sql.hive.HiveContext.x$3$lzycompute(HiveContext.scala:231)
at org.apache.spark.sql.hive.HiveContext.x$3(HiveContext.scala:229)
at
org.apache.spark.sql.hive.HiveContext.hiveconf$lzycompute(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.hiveconf(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:292)
at org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276)
at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:248)
at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:91)
at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:90)
at
scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
at org.apache.spark.sql.SQLContext.<init>(SQLContext.scala:90)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:72)
at
org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:51)
at
org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:56)
at
org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:62)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2465)
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:340)
... 26 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1410)
... 31 more
Caused by: javax.jdo.JDOFatalUserException: Class org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
NestedThrowables:
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:310)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:339)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:248)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:223)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:58)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:67)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:497)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:475)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:523)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:397)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:356)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:54)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:59)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4944)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:171)
... 36 more
Caused by: java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:274)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.forName(JDOHelper.java:2015)
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162)
... 55 more
As I understand from the exception, the datanucleus jars is not in the ClassPath so I added the following line to my .profile
export $SPARK_OPTS="-Djava.library.path=$SPARK_HOME/lib"
but the same exception still thrown and the server does not run.
How can I solve this issue ?
--
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Regards,
Anusha
RE: Spark SQL Thrift Server start exception :
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
Posted by "Cheng, Hao" <ha...@intel.com>.
Copy those jars into the $SPARK_HOME/lib/
datanucleus-api-jdo-3.2.6.jar
datanucleus-core-3.2.10.jar
datanucleus-rdbms-3.2.9.jar
see https://github.com/apache/spark/blob/master/bin/compute-classpath.sh#L120
-----Original Message-----
From: fanooos [mailto:dev.fanooos@gmail.com]
Sent: Tuesday, March 3, 2015 2:50 PM
To: user@spark.apache.org
Subject: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory
I have installed a hadoop cluster (version : 2.6.0), apache spark (version :
1.2.1 preBuilt for hadoop 2.4 and later), and hive (version 1.0.0).
When I try to start the spark sql thrift server I am getting the following exception.
Exception in thread "main" java.lang.RuntimeException:
java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346)
at
org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:235)
at
org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:231)
at scala.Option.orElse(Option.scala:257)
at
org.apache.spark.sql.hive.HiveContext.x$3$lzycompute(HiveContext.scala:231)
at org.apache.spark.sql.hive.HiveContext.x$3(HiveContext.scala:229)
at
org.apache.spark.sql.hive.HiveContext.hiveconf$lzycompute(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.hiveconf(HiveContext.scala:229)
at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:292)
at org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276)
at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:248)
at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:91)
at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:90)
at
scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
at org.apache.spark.sql.SQLContext.<init>(SQLContext.scala:90)
at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:72)
at
org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:51)
at
org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:56)
at
org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:62)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2465)
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:340)
... 26 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:526)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1410)
... 31 more
Caused by: javax.jdo.JDOFatalUserException: Class org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found.
NestedThrowables:
java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808)
at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:310)
at
org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:339)
at
org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:248)
at
org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:223)
at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73)
at
org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:58)
at
org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:67)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:497)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:475)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:523)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:397)
at
org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:356)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:54)
at
org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:59)
at
org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4944)
at
org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:171)
... 36 more
Caused by: java.lang.ClassNotFoundException:
org.datanucleus.api.jdo.JDOPersistenceManagerFactory
at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:274)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018)
at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016)
at java.security.AccessController.doPrivileged(Native Method)
at javax.jdo.JDOHelper.forName(JDOHelper.java:2015)
at
javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162)
... 55 more
As I understand from the exception, the datanucleus jars is not in the ClassPath so I added the following line to my .profile
export $SPARK_OPTS="-Djava.library.path=$SPARK_HOME/lib"
but the same exception still thrown and the server does not run.
How can I solve this issue ?
--
View this message in context: http://apache-spark-user-list.1001560.n3.nabble.com/Spark-SQL-Thrift-Server-start-exception-java-lang-ClassNotFoundException-org-datanucleus-api-jdo-JDOy-tp21887.html
Sent from the Apache Spark User List mailing list archive at Nabble.com.
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