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Posted to user@ctakes.apache.org by Gladia Hotan <gh...@mit.edu> on 2015/04/09 05:27:08 UTC

Error processing text documents in CPE

Hi,

I'm new to cTAKES and am using cTAKES 3.2.1. I'm trying to process a large
number of plain text files in the CPE, but I get the error:

org.apache.uima.cas.CASRuntimeException: JCas type
"org.apache.ctakes.typesystem.type.structured.DocumentID" used in Java
code, but was not declared in the XML type descriptor

I'm using test_plaintext.xml as the descriptor. Based on an archived post
regarding how to process plain text input, I changed the line below:

>                 <import
> location="../analysis_engine/AggregatePlaintextProcessor.xml"/>
>
> needs to be changed to use:
>
> AggregatePlaintextUMLSProcessor.xml

Could anyone tell me if there are other things I need to set?

Thank you!

Best,

Gladia

Re: Error processing text documents in CPE

Posted by britt fitch <br...@wiredinformatics.com>.

You can find details on unsubscribing here: https://ctakes.apache.org/mailing-lists.html <https://ctakes.apache.org/mailing-lists.html>



Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
Britt.Fitch@wiredinformatics.com

> On Apr 9, 2015, at 12:22 PM, Jen Seale <je...@gmail.com> wrote:
> 
> Hi! Can you take me off this mailing list? Thanks! - Jen
> 
> On Thu, Apr 9, 2015 at 11:17 AM, britt fitch <
> britt.fitch@wiredinformatics.com> wrote:
> 
>> Hi Gladia,
>> 
>> This thread may be helpful:
>> 
>> http://mail-archives.apache.org/mod_mbox/ctakes-user/201311.mbox/%3C1384464005.90860.YahooMailNeo@web140301.mail.bf1.yahoo.com%3E
>> 
>> I don't recall if this has already been fixed in trunk or not.  If not,
>> would you mind opening a Jira ticket for it and we can be sure to fix it in
>> the next release?
>> 
>> 
>>    Britt Fitch
>> Wired Informatics
>> 265 Franklin St Ste 1702
>> Boston, MA 02110
>> http://wiredinformatics.com
>> Britt.Fitch@wiredinformatics.com
>> 
>> On Apr 8, 2015, at 11:27 PM, Gladia Hotan <gh...@mit.edu> wrote:
>> 
>> Hi,
>> 
>> I'm new to cTAKES and am using cTAKES 3.2.1. I'm trying to process a large
>> number of plain text files in the CPE, but I get the error:
>> 
>> org.apache.uima.cas.CASRuntimeException: JCas type
>> "org.apache.ctakes.typesystem.type.structured.DocumentID" used in Java
>> code, but was not declared in the XML type descriptor
>> 
>> I'm using test_plaintext.xml as the descriptor. Based on an archived post
>> regarding how to process plain text input, I changed the line below:
>> 
>>>                <import
>>> location="../analysis_engine/AggregatePlaintextProcessor.xml"/>
>>> 
>>> needs to be changed to use:
>>> 
>>> AggregatePlaintextUMLSProcessor.xml
>> 
>> Could anyone tell me if there are other things I need to set?
>> 
>> Thank you!
>> 
>> Best,
>> 
>> Gladia
>> 
>> 
>>

Re: Error processing text documents in CPE

Posted by Jen Seale <je...@gmail.com>.

Hi! Can you take me off this mailing list? Thanks! - Jen

On Thu, Apr 9, 2015 at 11:17 AM, britt fitch <
britt.fitch@wiredinformatics.com> wrote:

> Hi Gladia,
>
> This thread may be helpful:
>
> http://mail-archives.apache.org/mod_mbox/ctakes-user/201311.mbox/%3C1384464005.90860.YahooMailNeo@web140301.mail.bf1.yahoo.com%3E
>
> I don't recall if this has already been fixed in trunk or not.  If not,
> would you mind opening a Jira ticket for it and we can be sure to fix it in
> the next release?
>
>
>     Britt Fitch
> Wired Informatics
> 265 Franklin St Ste 1702
> Boston, MA 02110
> http://wiredinformatics.com
> Britt.Fitch@wiredinformatics.com
>
> On Apr 8, 2015, at 11:27 PM, Gladia Hotan <gh...@mit.edu> wrote:
>
> Hi,
>
> I'm new to cTAKES and am using cTAKES 3.2.1. I'm trying to process a large
> number of plain text files in the CPE, but I get the error:
>
> org.apache.uima.cas.CASRuntimeException: JCas type
> "org.apache.ctakes.typesystem.type.structured.DocumentID" used in Java
> code, but was not declared in the XML type descriptor
>
> I'm using test_plaintext.xml as the descriptor. Based on an archived post
> regarding how to process plain text input, I changed the line below:
>
> >                 <import
> > location="../analysis_engine/AggregatePlaintextProcessor.xml"/>
> >
> > needs to be changed to use:
> >
> > AggregatePlaintextUMLSProcessor.xml
>
> Could anyone tell me if there are other things I need to set?
>
> Thank you!
>
> Best,
>
> Gladia
>
>
>

Re: Error processing text documents in CPE

Posted by britt fitch <br...@wiredinformatics.com>.

Hi Gladia,

This thread may be helpful:
http://mail-archives.apache.org/mod_mbox/ctakes-user/201311.mbox/%3C1384464005.90860.YahooMailNeo@web140301.mail.bf1.yahoo.com%3E <http://mail-archives.apache.org/mod_mbox/ctakes-user/201311.mbox/%3C1384464005.90860.YahooMailNeo@web140301.mail.bf1.yahoo.com%3E>

I don't recall if this has already been fixed in trunk or not.  If not, would you mind opening a Jira ticket for it and we can be sure to fix it in the next release?



Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
Britt.Fitch@wiredinformatics.com

> On Apr 8, 2015, at 11:27 PM, Gladia Hotan <gh...@mit.edu> wrote:
> 
> Hi,
> 
> I'm new to cTAKES and am using cTAKES 3.2.1. I'm trying to process a large number of plain text files in the CPE, but I get the error:
> 
> org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.typesystem.type.structured.DocumentID" used in Java code, but was not declared in the XML type descriptor
> 
> I'm using test_plaintext.xml as the descriptor. Based on an archived post regarding how to process plain text input, I changed the line below:
> >                 <import
> > location="../analysis_engine/AggregatePlaintextProcessor.xml"/>
> >
> > needs to be changed to use:
> >
> > AggregatePlaintextUMLSProcessor.xml
> Could anyone tell me if there are other things I need to set?
> Thank you!
> Best,
> Gladia

Re: Error processing text documents in CPE

Posted by britt fitch <br...@wiredinformatics.com>.

Hi Gladia,

This thread may be helpful:
http://mail-archives.apache.org/mod_mbox/ctakes-user/201311.mbox/%3C1384464005.90860.YahooMailNeo@web140301.mail.bf1.yahoo.com%3E <http://mail-archives.apache.org/mod_mbox/ctakes-user/201311.mbox/%3C1384464005.90860.YahooMailNeo@web140301.mail.bf1.yahoo.com%3E>

I don't recall if this has already been fixed in trunk or not.  If not, would you mind opening a Jira ticket for it and we can be sure to fix it in the next release?



Britt Fitch
Wired Informatics
265 Franklin St Ste 1702
Boston, MA 02110
http://wiredinformatics.com
Britt.Fitch@wiredinformatics.com

> On Apr 8, 2015, at 11:27 PM, Gladia Hotan <gh...@mit.edu> wrote:
> 
> Hi,
> 
> I'm new to cTAKES and am using cTAKES 3.2.1. I'm trying to process a large number of plain text files in the CPE, but I get the error:
> 
> org.apache.uima.cas.CASRuntimeException: JCas type "org.apache.ctakes.typesystem.type.structured.DocumentID" used in Java code, but was not declared in the XML type descriptor
> 
> I'm using test_plaintext.xml as the descriptor. Based on an archived post regarding how to process plain text input, I changed the line below:
> >                 <import
> > location="../analysis_engine/AggregatePlaintextProcessor.xml"/>
> >
> > needs to be changed to use:
> >
> > AggregatePlaintextUMLSProcessor.xml
> Could anyone tell me if there are other things I need to set?
> Thank you!
> Best,
> Gladia