Re: Loading ctakes-temporal

[Jonas Spenger <sp...@informatik.hu-berlin.de>]

Hi Alex,

That is exactly what i was looking for.
Thank you very much!

Jonas S

Am 29.09.17 um 23:41 schrieb Alexandru Zbarcea:
> Hi Jonas,
>
> I think the following will help you (already proposed as PR to 
> https://github.com/healthnlp/examples 
> <https://github.com/healthnlp/examples>): 
> https://github.com/azbarcea/ctakes-examples/tree/fix-temporal-execution
>
> As I described in the README.md:
>
> git clone https://github.com/azbarcea/ctakes-examples.git
> cd ctakes-examples
> git checkout fix-temporal-execution
>
> |cd ctakes-temporal-demo mvn clean install export 
> ctakes_umlsuser='<your-username>' export 
> ctakes_umlspw='<your-password>' ./configure.sh MAVEN_OPTS="-Xmx4096m 
> -Xms3072m -Xss128M -XX:+CMSClassUnloadingEnabled 
> -XX:-UseGCOverheadLimit" mvn jetty:run mvn jetty:run|
> This would lunch jetty on 8080, so visit:
> http://localhost:8080/
> and you should see something like:
>
> Inline image 1
>
>
>
> All settings are in target folder, so no need to modify source or 
> anything else.
>
> Hope it helps,
> Alex
>
>
> On Fri, Sep 29, 2017 at 4:00 PM, Jonas S 
> <spengerj@informatik.hu-berlin.de 
> <ma...@informatik.hu-berlin.de>> wrote:
>
>     Hi!
>
>     I managed to get it working (and it works great as a REST service)
>     by installing through https://github.com/healthnlp/examples
>     <https://github.com/healthnlp/examples>
>     http://healthnlp.github.io/examples/
>     <http://healthnlp.github.io/examples/> .
>
>     It works great, but as an aside, how would I add the full UMLS to
>     the web service?
>
>     Best regards,
>     Jonas
>
>     Am 19.09.17 um 16:11 schrieb Jonas Spenger:
>
>         Dear all,
>
>
>         I have a question regarding the cTAKES 4.0 - Temporal Module,
>         as I would like to use it in a project.
>
>
>         There is no direct guide on how to use / access it. So how can
>         I use it, i.e. what shell command should I use? Is it the same
>         as the clinical pipeline, if so, why does not f.e. ‘yesterday’
>         get recognised as a Timeex by the clinical pipeline?
>
>
>         Also, maybe it is correllated, I have the same issue as
>         message no. 1418 “Cannot load ctakes-temporal” by Zeyu Li. I
>         try to use the TemporalAggregatePipeline.xml but get the exact
>         same error as mentioned by Zeyu.
>
>         Additional Info:
>         MacOs, have not installed UMLS as not residing in a member
>         country. cTAKES clinical pipeline works but does not recognize
>         time expressions satisfactorily.
>
>
>         Thank you in advance and best regards,
>         Jonas
>
>
>
>