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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 21:54:53 UTC

[04/26] incubator-taverna-server git commit: temporarily empty repository

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-# What is the version of the server? Bind this in automatically.
-tavernaserver.version=${project.version}
-tavernaserver.revision.describe=${git.commit.id.describe}
-tavernaserver.branch=${git.branch}
-tavernaserver.timestamp=${git.build.time}

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-<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
-<html>
-<head>
-<meta http-equiv="Content-Type" content="text/html; charset=US-ASCII">
-<title>Taverna Server %{VERSION}</title>
-</head>
-<body>
-<h1>Taverna Server %{VERSION}</h1>
-<div style="text-align;center">
-	<p>
-		<i>Note that this is a pre-release version. Significant known
-			issues remain open and it is not guaranteed that the service API
-			will be stable.</i>
-	</p>
-</div>
-<p>For a full list of operations, see the <a
-    href="%{BASEURL}/services">service listing</a> generated by Apache
-CXF, which indicates where to access the WSDL and WADL descriptions of
-the T2Server interface.</p>
-<p>What follows below is a simple guide to using the server. It does
-<i>not</i> cover all the features; a much more extensive guide is available on
-<a href="http://www.mygrid.org.uk/dev/wiki/display/taverna/Taverna+Server+2.4"
->the myGrid website</a>.</p>
-<h2>5 Minute Guide to Using the REST API</h2>
-<p>Taverna Server %{VERSION} supports both REST and SOAP APIs; you may use either API
-to access the service and any of the workflow runs hosted by the service. This
-simple guide just discusses the REST API.</p>
-<ol>
-  <li>
-  <p>The client starts by creating a workflow run. This is done by POSTing a
-  T2flow document to the service at the address <tt>%{BASEURL}/rest/runs</tt>
-  with the content type <tt>application/vnd.taverna.t2flow+xml</tt>.</p>
-  <p>The result of the POST is an <tt>HTTP 201 Created</tt> that gives the
-  location of the created run (in a <tt>Location</tt> header),
-  <tt>%{BASEURL}/rest/runs/<b>UUID</b></tt> (where <tt><b>UUID</b></tt> is a
-  unique string that identifies the particular run; this is also the name of
-  the run that you would use in the SOAP interface). Note that the run is not
-  yet actually doing anything.</p>
-  </li>
-  <li>
-  <p>Next, you need to set up the inputs to the workflow ports. To set the
-  input port, <tt><b>FOO</b></tt>, to have the value <tt><b>BAR</b></tt>, you
-  would PUT a message like this to the URI
-  <tt>%{BASEURL}/rest/runs/<b>UUID</b>/input/input/<b>FOO</b></tt>
-  </p>
-  <blockquote><pre>&lt;t2sr:runInput xmlns:t2sr=&quot;http://ns.taverna.org.uk/2010/xml/server/rest/&quot;&gt;
-    &lt;t2sr:value&gt;<b>BAR</b>&lt;/t2sr:value&gt;
-&lt;/t2sr:runInput&gt;</pre></blockquote>
-  </li>
-  <li>
-  <p>Now you can start the file running. This is done by using a PUT to set
-  <tt>%{BASEURL}/rest/runs/<b>UUID</b>/status</tt> to the plain text value
-  <tt>Operating</tt>.</p>
-  </li>
-  <li>
-  <p>Now you need to poll, waiting for the workflow to finish. To discover the
-  state of a run, you can (at any time) do a GET on
-  <tt>%{BASEURL}/rest/runs/<b>UUID</b>/status</tt>; when the workflow has
-  finished executing, this will return <tt>Finished</tt> instead of
-  <tt>Operating</tt> (or <tt>Initialized</tt>, the starting state).</p>
-  </li>
-  <li>
-  <p>Every workflow run has an expiry time, after which it will be destroyed
-  and all resources (i.e., local files) associated with it cleaned up. By
-  default in this release, this is 20 minutes after initial creation. To see
-  when a particular run is scheduled to be disposed of, do a GET on
-  <tt>%{BASEURL}/rest/runs/<b>UUID</b>/expiry</tt>; you may set the time when
-  the run is disposed of by PUTting a new time to that same URI. Note that
-  this includes not just the time when the workflow is executing, but also
-  when the input files are being created beforehand and when the results are
-  being downloaded afterwards; you are advised to make your clients regularly
-  advance the expiry time while the run is in use.</p>
-  </li>
-  <li>
-  <p>The outputs from the workflow are files created in the <tt>out</tt>
-  subdirectory of the run's working directory. The contents of the
-  subdirectory can be read by doing a GET on
-  <tt>%{BASEURL}/rest/runs/<b>UUID</b>/wd/out</tt> which will return an XML
-  document describing the contents of the directory, with links to each of the
-  files within it. Doing a GET on those links will retrieve the actual created
-  files (as uninterpreted binary data).</p>
-  <p>Thus, if a single output <tt><b>FOO.OUT</b></tt> was produced from the
-  workflow, it would be written to the file that can be retrieved from
-  <tt>%{BASEURL}/rest/runs/<b>UUID</b>/wd/out/<b>FOO.OUT</b></tt> and the
-  result of the GET on <tt>%{BASEURL}/rest/runs/<b>UUID</b>/wd/out</tt> would
-  look something like this:</p>
-  <blockquote><pre>&lt;t2sr:directoryContents xmlns:xlink="http://www.w3.org/1999/xlink"
-        xmlns:t2sr="http://ns.taverna.org.uk/2010/xml/server/rest"
-        xmlns:t2s="http://ns.taverna.org.uk/2010/xml/server/"&gt;
-    &lt;t2s:file xlink:href="%{BASEURL}/rest/runs/<b>UUID</b>/wd/out/<b>FOO.OUT</b>"
-            t2sr:name="<b>FOO.OUT</b>"&gt;out/<b>FOO.OUT</b>&lt;/t2s:file&gt;
-&lt;/t2sr:directoryContents&gt;</pre></blockquote>
-  </li>
-  <li>
-  <p>The standard output and standard error from the T2 Command Line Executor
-  subprocess can be read via properties of the special I/O listener. To do
-  that, do a GET on
-  <tt>%{BASEURL}/rest/runs/<b>UUID</b>/listeners/io/properties/<b>stdout</b></tt>
-  (or <tt>.../<b>stderr</b></tt>). Once the subprocess has finished executing,
-  the I/O listener will provide a third property containing the exit code of
-  the subprocess, called <tt>exitcode</tt>.</p> <p>Note that the supported set
-  of listeners and properties will be subject to change in future versions of
-  the server, and should not be relied upon.</p>
-  </li>
-  <li>
-  <p>Once you have finished, destroy the run by doing a DELETE on
-  <tt>%{BASEURL}/rest/runs/<b>UUID</b></tt>. Once you have done that, none of
-  the resources associated with the run (including both input and output
-  files) will exist any more. If the run is still executing, this will also
-  cause it to be stopped.</p>
-  </li>
-</ol>
-<p>All operations described above have equivalents in the
-<a href="%{BASEURL}/soap?wsdl">SOAP service interface</a>.</p>
-
-<div>
-<hr>
-<p><small>Copyright &copy; 2010&ndash;2014. The University of Manchester.</small></p>
-<p><small>Software Release ID: ${project.version} (commit: ${git.branch})</small></p>
-</div>
-</body>
-</html>

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-Manifest-Version: 1.0
-Class-Path: 
-

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-org.apache.cxf.common.logging.Log4jLogger

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-<?xml version="1.0" encoding="UTF-8"?>
-<persistence version="1.0"
-	xmlns="http://java.sun.com/xml/ns/persistence" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://java.sun.com/xml/ns/persistence http://java.sun.com/xml/ns/persistence/persistence_1_0.xsd ">
-	<persistence-unit name="TavernaServer">
-		<class>org.taverna.server.master.WebappState</class>
-		<class>org.taverna.server.master.identity.User</class>
-		<class>org.taverna.server.master.localworker.PersistedState</class>
-		<class>org.taverna.server.master.notification.atom.Event</class>
-		<class>org.taverna.server.master.usage.UsageRecord</class>
-		<class>org.taverna.server.master.worker.RunConnection</class>
-		<exclude-unlisted-classes>true</exclude-unlisted-classes>
-	</persistence-unit>
-</persistence>

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-<?xml version="1.0" encoding="UTF-8"?>
-<!-- Copyright (C) 2010-2011 The University of Manchester See the file "LICENSE" 
-	for license terms. -->
-<beans xmlns="http://www.springframework.org/schema/beans"
-	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context"
-	xmlns:task="http://www.springframework.org/schema/task" xmlns:util="http://www.springframework.org/schema/util"
-	default-lazy-init="false"
-	xsi:schemaLocation="http://www.springframework.org/schema/task http://www.springframework.org/schema/task/spring-task-3.0.xsd
-		http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.0.xsd
-		http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-3.0.xsd
-		http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.0.xsd">
-
-	<bean id="webapp" class="org.taverna.server.master.TavernaServer">
-		<property name="policy" ref="worker.policy" />
-		<property name="runStore" ref="worker.rundb" />
-		<property name="fileUtils" ref="fileUtils" />
-		<property name="contentsDescriptorBuilder" ref="contentsDescriptorBuilder" />
-		<property name="notificationEngine" ref="notificationFabric" />
-		<property name="support" ref="webapp.support" />
-		<property name="eventSource" ref="dispatch.atom" />
-		<property name="interactionFeed" value="${taverna.interaction.feed_path}" />
-		<lookup-method name="makeRunInterface" bean="run.coreView.prototype" />
-		<lookup-method name="getPolicyDescription" bean="webapp.policyView" />
-	</bean>
-
-	<bean id="webapp.support" class="org.taverna.server.master.TavernaServerSupport">
-		<property name="policy" ref="worker.policy" />
-		<property name="listenerFactory" ref="localworker.factory" />
-		<property name="runFactory" ref="localworker.factory" />
-		<property name="fileUtils" ref="fileUtils" />
-		<property name="runStore" ref="worker.rundb" />
-		<property name="stateModel" ref="webapp.state" />
-		<property name="idMapper" ref="IdentityMapper" />
-		<property name="invocationCounter" ref="webapp.invocationCounter" />
-		<property name="webapp" ref="webapp" />
-		<property name="contentTypeMap">
-			<map key-type="java.lang.String" value-type="java.lang.String">
-				<description>Maps suffixes (post '.') to content types.</description>
-				<entry key="baclava" value="application/vnd.taverna.baclava+xml" />
-				<entry key="robundle.zip" value="application/vnd.wf4ever.robundle+zip" />
-			</map>
-		</property>
-		<property name="capabilitySource" ref="capabilities" />
-	</bean>
-
-	<bean id="capabilities" class="org.taverna.server.master.utils.CapabilityLister" />
-
-	<bean id="webapp.policyView" class="org.taverna.server.master.PolicyREST">
-		<property name="support" ref="webapp.support" />
-		<property name="policy" ref="worker.policy" />
-		<property name="listenerFactory" ref="localworker.factory" />
-		<property name="notificationEngine" ref="notificationFabric" />
-	</bean>
-
-	<bean id="contentsDescriptorBuilder" class="org.taverna.server.master.ContentsDescriptorBuilder">
-		<property name="uriBuilderFactory" ref="webapp" />
-		<property name="fileUtils" ref="fileUtils" />
-	</bean>
-
-	<bean id="webapp.state" class="org.taverna.server.master.ManagementState">
-		<description>The initial state of the webapp.</description>
-		<property name="logIncomingWorkflows" value="${default.logworkflows}" />
-		<property name="allowNewWorkflowRuns" value="${default.permitsubmit}" />
-		<property name="logOutgoingExceptions" value="${default.logexceptions}" />
-		<property name="persistenceManagerBuilder" ref="pmb" />
-		<property name="self" ref="webapp.state" />
-	</bean>
-
-	<bean id="webapp.invocationCounter" class="org.taverna.server.master.utils.InvocationCounter" />
-	<bean id="webapp.perfLogger" class="org.taverna.server.master.utils.CallTimeLogger">
-		<property name="threshold" value="${calltime.logthreshold:4000000}" />
-	</bean>
-
-	<bean id="run.coreView.prototype" scope="prototype"
-		class="org.taverna.server.master.RunREST">
-		<property name="support" ref="webapp.support" />
-		<property name="cdBuilder" ref="contentsDescriptorBuilder" />
-		<lookup-method name="makeSecurityInterface" bean="run.securityView.prototype" />
-		<lookup-method name="makeInputInterface" bean="run.inputView.prototype" />
-		<lookup-method name="makeListenersInterface" bean="run.listenersView.prototype" />
-		<lookup-method name="makeDirectoryInterface" bean="run.directoryView.prototype" />
-		<lookup-method name="makeInteractionFeed" bean="run.interactionFeed.prototype" />
-	</bean>
-
-	<bean id="run.directoryView.prototype" scope="prototype"
-		class="org.taverna.server.master.DirectoryREST">
-		<property name="support" ref="webapp.support" />
-		<property name="fileUtils" ref="fileUtils" />
-	</bean>
-
-	<bean id="run.listenersView.prototype" scope="prototype"
-		class="org.taverna.server.master.ListenersREST">
-		<property name="support" ref="webapp.support" />
-		<lookup-method name="makeListenerInterface" bean="run.singleListenerView.prototype" />
-	</bean>
-
-	<bean id="run.singleListenerView.prototype" scope="prototype"
-		class="org.taverna.server.master.SingleListenerREST">
-		<lookup-method name="makePropertyInterface" bean="run.propertyView.prototype" />
-	</bean>
-
-	<bean id="run.propertyView.prototype" scope="prototype"
-		class="org.taverna.server.master.ListenerPropertyREST">
-		<property name="support" ref="webapp.support" />
-	</bean>
-
-	<bean id="run.inputView.prototype" scope="prototype"
-		class="org.taverna.server.master.InputREST">
-		<property name="support" ref="webapp.support" />
-		<property name="cdBuilder" ref="contentsDescriptorBuilder" />
-		<property name="fileUtils" ref="fileUtils" />
-	</bean>
-
-	<bean id="run.securityView.prototype" scope="prototype"
-		class="org.taverna.server.master.RunSecurityREST">
-		<property name="support" ref="webapp.support" />
-	</bean>
-
-	<bean id="run.interactionFeed.prototype" scope="prototype"
-		class="org.taverna.server.master.InteractionFeed">
-		<property name="interactionFeedSupport" ref="interactionFeed" />
-	</bean>
-
-	<bean id="feed" class="org.taverna.server.master.notification.atom.AtomFeed">
-		<property name="eventSource" ref="dispatch.atom" />
-		<property name="support" ref="webapp.support" />
-		<property name="feedLanguage" value="${atom.language}" />
-		<property name="abdera" ref="abdera" />
-	</bean>
-
-	<bean id="admin" class="org.taverna.server.master.admin.AdminBean">
-		<property name="adminHtmlFile" value="/admin.html" />
-		<property name="counter" ref="webapp.invocationCounter" />
-		<property name="factory" ref="localworker.factory" />
-		<property name="localWorkerModel" ref="localworker.state" />
-		<property name="runDB" ref="worker.rundb" />
-		<property name="state" ref="webapp.state" />
-		<property name="usageRecords" ref="usageRecordSink" />
-		<property name="userStore" ref="userStore" />
-	</bean>
-
-	<bean id="IdentityMapper" class="org.taverna.server.master.identity.CompositeIDMapper">
-		<property name="identityMappers">
-			<list>
-				<bean id="AuthorityBased"
-					class="org.taverna.server.master.identity.AuthorityDerivedIDMapper">
-					<description>Derives the local user identity to use for execution
-						from the LOCALUSER_* Spring Security authority. Thus, if the user
-						has &quot;LOCALUSER_foo&quot;, they will be executing as the local
-						user id &quot;foo&quot;.</description>
-				</bean>
-				<bean id="SelfAccess"
-					class="org.taverna.server.master.identity.WorkflowInternalAuthProvider.WorkflowSelfIDMapper">
-					<description>Handles the case where a workflow is accessing itself for
-						the purpose of publishing interactions.</description>
-					<property name="runStore" ref="worker.rundb" />
-				</bean>
-				<bean id="Extracting" class="org.taverna.server.master.identity.NameIDMapper">
-					<description>An alternate mechanism for mapping users. This tries
-						to use an RE to extract the user name from the principal name.
-					</description>
-					<property name="regexp" value="${localusernameregexp}">
-						<description>An optional regexp to extract the local user name
-							from the principal's string description. The first capturing
-							group will be the result of the mapping operation.
-						</description>
-					</property>
-				</bean>
-				<bean id="Constant" class="org.taverna.server.master.identity.ConstantIDMapper">
-					<description>How to map web principals to local users. This one
-						maps everyone to the same user, "taverna".
-					</description>
-					<property name="constantId" value="${default.localusername}" />
-				</bean>
-			</list>
-		</property>
-	</bean>
-
-	<bean id="passwordEncoder"
-		class="org.springframework.security.crypto.bcrypt.BCryptPasswordEncoder" />
-	<bean class="org.taverna.server.master.identity.UserStore" id="userStore">
-		<property name="persistenceManagerBuilder" ref="pmb" />
-		<property name="baselineUserProperties">
-			<util:properties location="/WEB-INF/security/users.properties" />
-		</property>
-		<property name="defaultLocalUser" value="${default.localusername}" />
-		<property name="encoder" ref="passwordEncoder" />
-	</bean>
-
-	<!-- <bean id="sessionFactory" class="org.springframework.orm.hibernate3.annotation.AnnotationSessionFactoryBean"> 
-		<property name="dataSource" ref="dataSource" /> <property name="hibernateProperties"> 
-		<props> <prop key="hibernate.dialect">org.hibernate.dialect.DerbyDialect</prop> 
-		<prop key="hibernate.hbm2ddl.auto">create</prop> </props> </property> <property 
-		name="annotatedClasses"> <list> </list> </property> </bean> -->
-	<bean id="pmb" class="org.taverna.server.master.utils.JDOSupport.PersistenceManagerBuilder">
-		<property name="persistenceManagerFactory">
-			<bean id="pmf" class="org.datanucleus.api.jdo.JDOPersistenceManagerFactory"
-				destroy-method="close">
-				<property name="connectionFactory" ref="dataSource" />
-				<property name="nontransactionalRead" value="true" />
-				<property name="persistenceProperties">
-					<props>
-						<prop key="datanucleus.storeManagerType">rdbms</prop>
-						<prop key="datanucleus.autoCreateTables">true</prop>
-						<prop key="datanucleus.autoCreateTables">true</prop>
-						<prop key="datanucleus.validateTables">true</prop>
-						<prop key="datanucleus.autoCreateColumns">true</prop>
-						<prop key="datanucleus.autoCreateConstraints">true</prop>
-						<prop key="datanucleus.validateConstraints">true</prop>
-						<prop key="datanucleus.autoCreateSchema">true</prop>
-						<prop key="datanucleus.PersistenceUnitName">TavernaServer</prop>
-						<prop key="datanucleus.rdbms.datastoreAdapterClassName"
-							>org.taverna.server.master.utils.LoggingDerbyAdapter</prop>
-					</props>
-				</property>
-			</bean>
-		</property>
-	</bean>
-	<bean id="transactionAspect"
-		class="org.taverna.server.master.utils.JDOSupport.TransactionAspect" />
-
-	<bean id="systemPrereqs" class="org.springframework.beans.factory.config.MethodInvokingFactoryBean">
-		<description>http://stackoverflow.com/questions/3339736/set-system-property-with-spring-configuration-file</description>
-		<property name="targetObject" value="#{@systemProperties}" />
-		<property name="targetMethod" value="putAll" />
-		<property name="arguments">
-			<util:properties>
-				<prop key="derby.stream.error.field">org.taverna.server.master.utils.DerbyUtils.TO_LOG</prop>
-				<prop key="derby.stream.error.logSeverityLevel">30000</prop>
-			</util:properties>
-		</property>
-	</bean>
-	<!-- TODO: control the location of the database properly, or move to JNDI 
-		TODO: review whether what we are doing now is correct! -->
-	<bean id="dataSource" class="org.taverna.server.master.utils.WebappAwareDataSource">
-		<property name="driverClassName" value="org.apache.derby.jdbc.EmbeddedDriver" />
-		<property name="url"
-			value="jdbc:derby:directory:%{WEBAPPROOT}tavernaserver;create=true" />
-		<!-- Needed for Derby... -->
-		<property name="shutdownUrl"
-			value="jdbc:derby:directory:%{WEBAPPROOT}tavernaserver;shutdown=true" />
-		<property name="username" value="taverna" />
-		<property name="password" value="" />
-		<property name="contextualizer" ref="contextualizer" />
-	</bean>
-
-	<bean id="contextualizer" class="org.taverna.server.master.utils.Contextualizer" />
-
-	<bean id="usageRecordSink" class="org.taverna.server.master.usage.UsageRecordRecorder">
-		<property name="state" ref="webapp.state" />
-		<property name="contextualizer" ref="contextualizer" />
-		<property name="persistenceManagerBuilder" ref="pmb" />
-		<property name="self" ref="usageRecordSink" />
-		<property name="disableDB" value="${usage.disableDB}" />
-		<property name="logFile" value="${usage.logFile}" />
-	</bean>
-
-	<context:property-placeholder
-		ignore-unresolvable="true" order="2" properties-ref="default-factory-properties" />
-	<util:properties id="default-factory-properties">
-		<prop key="backEndFactory">org.taverna.server.master.localworker.IdAwareForkRunFactory</prop>
-	</util:properties>
-
-	<!-- This bean configuration replaced with org.taverna.server.master.localworker.LocalWorkerFactory -->
-	<!-- <bean id="localworker.factory" scope="singleton" lazy-init="false" 
-		class="${backEndFactory}"> <description> The simple policy manager and factory 
-		for the baseline localworker case. </description> <property name="state" 
-		ref="localworker.state" /> <property name="runDB" ref="worker.rundb" 
-		/> -->
-	<!-- Handled by autowiring to make type-resilient. -->
-	<!-- <property name="idMapper" ref="IdentityMapper" /> -->
-	<!-- <property name="securityContextFactory" ref="worker.securityContext" 
-		/> <property name="usageRecordSink" ref="usageRecordSink" /> <property name="URProcessorPool" 
-		ref="URThreads" /> </bean> -->
-
-	<!-- <task:executor id="URThreads" pool-size="${pool.size}" /> -->
-
-	<bean id="worker.securityContext"
-		class="org.taverna.server.master.worker.SecurityContextFactory">
-		<property name="runDatabase" ref="worker.rundb" />
-		<property name="filenameConverter" ref="fileUtils" />
-		<property name="x500Utils" ref="x500Utils" />
-		<property name="httpRealm" value="${http.realmName}" />
-		<property name="uriSource" ref="webapp" />
-		<property name="certificateFetcher" ref="certificateChainFetcher" />
-		<property name="passwordIssuer" ref="passwordIssuer" />
-	</bean>
-
-	<bean id="passwordIssuer" class="org.taverna.server.master.worker.PasswordIssuer">
-		<!-- <property name="length" value="8" /> -->
-	</bean>
-
-	<bean id="certificateChainFetcher" class="org.taverna.server.master.utils.CertificateChainFetcher">
-		<property name="secure" value="${fetchCertificateChain}" />
-	</bean>
-
-	<bean id="localworker.state" class="org.taverna.server.master.localworker.LocalWorkerState"
-		scope="singleton" lazy-init="false">
-		<description>
-			The state of the simple factory for the identity-aware
-			local worker.
-		</description>
-		<property name="defaultLifetime" value="${default.lifetime}">
-			<description>How long the run lasts for by default, in seconds.
-			</description>
-		</property>
-		<property name="maxRuns" value="${default.runlimit}">
-			<description>The maximum simultaneous number of runs.</description>
-		</property>
-		<property name="operatingLimit" value="${default.operatinglimit}">
-			<description>
-				The maximum number of runs that are in the Operating state,
-				i.e., actually running with a process consuming resources.
-			</description>
-		</property>
-		<property name="extraArgs">
-			<description>Any extra arguments (memory control, etc.) to pass to
-				the spawned subprocesses.
-			</description>
-			<list>
-			</list>
-		</property>
-		<property name="waitSeconds" value="40">
-			<description>An upper bound (in seconds) on the time to wait for a
-				subprocess to start before failing it.
-			</description>
-		</property>
-		<property name="sleepMS" value="1000">
-			<description>The time to wait (in milliseconds) between polling for
-				the subprocess to complete its registration.
-			</description>
-		</property>
-		<property name="persistenceManagerBuilder" ref="pmb" />
-		<!-- <property name="javaBinary"> <description>The name of the java executable 
-			used to run the server worker. Defaults to the executable used to run the 
-			hosting environment.</description> </property> -->
-		<!-- <property name="serverWorkerJar"> <description>The full path to the 
-			executable JAR file containing the implementation of the server worker.</description> 
-			</property> -->
-		<!-- <property name="executeWorkflowScript"> <description>The full path 
-			to the executeworkflow.sh in either the Taverna 2 Workbench distribution 
-			or the Taverna 2 Command Line distribution.</description> </property> -->
-		<property name="self" ref="localworker.state" />
-		<property name="defaultExecuteWorkflowScript" value="${executeWorkflowScript:NONE}" />
-	</bean>
-
-	<bean id="worker.policy" class="org.taverna.server.master.worker.PolicyImpl">
-		<description>
-			The implementation of the access control policy supported
-			by the localworker run engine.
-		</description>
-		<property name="limits" ref="localworker.state" />
-		<property name="runDB" ref="worker.rundb" />
-	</bean>
-	<bean id="worker.rundb" class="org.taverna.server.master.worker.RunDatabase">
-		<property name="notifier" ref="worker.notifier" />
-		<property name="typeNotifiers">
-			<list>
-				<ref bean="cn.email" />
-				<ref bean="cn.sms" />
-				<ref bean="cn.twitter" />
-				<!-- <ref bean="cn.xmpp"/> -->
-			</list>
-		</property>
-		<property name="notificationEngine" ref="notificationFabric" />
-		<property name="dao" ref="worker.runDAO" />
-	</bean>
-	<bean id="cn.email"
-		class="org.taverna.server.master.worker.VelocityCompletionNotifier">
-		<property name="name" value="email" />
-		<property name="subject" value="Workflow run finished executing" />
-		<property name="velocityEngine" ref="velocity" />
-		<property name="uriBuilderFactory" ref="webapp" />
-	</bean>
-	<bean id="cn.sms"
-		class="org.taverna.server.master.worker.VelocityCompletionNotifier">
-		<property name="name" value="sms" />
-		<property name="subject" value="Run finished" />
-		<property name="velocityEngine" ref="velocity" />
-		<property name="uriBuilderFactory" ref="webapp" />
-	</bean>
-	<bean id="cn.twitter"
-		class="org.taverna.server.master.worker.VelocityCompletionNotifier">
-		<property name="name" value="twitter" />
-		<property name="subject" value="Run finished" />
-		<property name="velocityEngine" ref="velocity" />
-		<property name="uriBuilderFactory" ref="webapp" />
-	</bean>
-	
-	<bean id="worker.runDAO" class="org.taverna.server.master.worker.RunDatabaseDAO">
-		<description>
-			The implementation of the catalog of workflow runs
-			supported by the localworker run engine.
-		</description>
-		<property name="persistenceManagerBuilder" ref="pmb" />
-		<property name="facade" ref="worker.rundb" />
-	</bean>
-	<task:scheduled-tasks scheduler="taskScheduler">
-		<task:scheduled ref="worker.rundb" method="cleanNow"
-			fixed-delay="${purge.interval}" />
-		<task:scheduled ref="worker.rundb" method="checkForFinishNow"
-			fixed-delay="${finish.interval}" />
-		<task:scheduled ref="dispatch.atom" method="deleteExpiredEvents"
-			fixed-delay="${atom.cleaninterval}" />
-	</task:scheduled-tasks>
-
-	<bean id="notificationFabric"
-		class="org.taverna.server.master.notification.NotificationEngine">
-		<property name="dispatchers">
-			<list>
-				<ref bean="dispatch.email" />
-				<ref bean="dispatch.twitter" />
-				<ref bean="dispatch.xmpp" />
-				<ref bean="dispatch.sms" />
-			</list>
-		</property>
-		<property name="universalDispatchers">
-			<list>
-				<ref bean="dispatch.atom" />
-			</list>
-		</property>
-	</bean>
-
-	<bean id="dispatch.email" class="org.taverna.server.master.notification.EmailDispatcher">
-		<property name="from" value="${email.from}" />
-		<property name="messageContentType" value="${email.type}" />
-		<property name="cooldownSeconds" value="${message.cooldown}" />
-		<property name="smtpHost" value="${email.host}" />
-		<property name="sender">
-			<bean class="org.springframework.mail.javamail.JavaMailSenderImpl"
-				id="javamail">
-				<property name="host" value="${email.host}" />
-			</bean>
-		</property>
-	</bean>
-	<bean id="dispatch.twitter"
-		class="org.taverna.server.master.notification.TwitterDispatcher">
-		<property name="cooldownSeconds" value="${message.cooldown}" />
-		<property name="accessToken" value="${twitter.oauth.accessToken}" />
-		<property name="accessSecret" value="${twitter.oauth.accessTokenSecret}" />
-	</bean>
-	<bean id="dispatch.xmpp" class="org.taverna.server.master.notification.JabberDispatcher">
-		<property name="resource" value="${xmpp.resource}" />
-		<property name="host" value="${xmpp.service}" />
-		<property name="username" value="${xmpp.user}" />
-		<property name="password" value="${xmpp.password}" />
-	</bean>
-	<bean id="dispatch.sms" class="org.taverna.server.master.notification.SMSDispatcher">
-		<property name="usernameField" value="${sms.userfield}" />
-		<property name="passwordField" value="${sms.passfield}" />
-		<property name="destinationField" value="${sms.destfield}" />
-		<property name="messageField" value="${sms.msgfield}" />
-		<property name="cooldownSeconds" value="${message.cooldown}" />
-	</bean>
-
-	<bean id="dispatch.atom" class="org.taverna.server.master.notification.atom.EventDAO">
-		<property name="expiryAgeDays" value="${atom.lifespan}" />
-		<property name="persistenceManagerBuilder" ref="pmb" />
-		<property name="uriBuilderFactory" ref="feed" />
-		<property name="self" ref="dispatch.atom" />
-	</bean>
-
-	<bean id="worker.notifier"
-		class="org.taverna.server.master.worker.SimpleFormattedCompletionNotifier">
-		<property name="subject" value="${message.termination.subject}" />
-		<property name="messageFormat" value="${message.termination.body}" />
-		<property name="name" value="fallback"/>
-	</bean>
-
-	<bean id="fileUtils" class="org.taverna.server.master.utils.FilenameUtils" />
-	<bean id="x500Utils" class="org.taverna.server.master.utils.X500Utils" />
-	<task:scheduler id="taskScheduler" pool-size="${pool.size}" />
-
-	<bean class="org.taverna.server.master.utils.JCECheck" id="JCECheck" />
-
-	<bean class="org.taverna.server.master.interaction.InteractionFeedSupport"
-		id="interactionFeed" scope="singleton">
-		<property name="abdera" ref="abdera" />
-		<property name="support" ref="webapp.support" />
-		<property name="uriBuilder" ref="webapp" />
-		<property name="utils" ref="fileUtils" />
-	</bean>
-	<bean class="org.taverna.server.master.rest.handler.FeedHandler" id="atomFeedHandler">
-		<property name="abdera" ref="abdera" />
-	</bean>
-	<bean class="org.taverna.server.master.rest.handler.EntryHandler" id="atomEntryHandler">
-		<property name="abdera" ref="abdera" />
-	</bean>
-
-	<bean id="authProvider" class="org.taverna.server.master.identity.StrippedDownAuthProvider">
-		<property name="passwordEncoder" ref="passwordEncoder" />
-		<property name="userDetailsService">
-			<bean class="org.taverna.server.master.identity.UserStore.CachedUserStore">
-				<property name="realStore" ref="userStore" />
-			</bean>
-		</property>
-	</bean>
-	<bean id="workflowInternalAuthProvder"
-		class="org.taverna.server.master.identity.WorkflowInternalAuthProvider">
-		<property name="dao" ref="worker.runDAO" />
-		<property name="cacheBound" value="${default.runlimit}" />
-	</bean>
-	<bean id="velocity" class="org.apache.velocity.app.VelocityEngine"
-		init-method="init" lazy-init="false">
-		<constructor-arg>
-			<props>
-				<prop key="input.encoding">UTF-8</prop>
-				<prop key="output.encoding">UTF-8</prop>
-				<prop key="runtime.log.logsystem.class">org.apache.velocity.runtime.log.Log4JLogChute</prop>
-				<prop key="runtime.log.logsystem.log4j.logger">org.taverna.server.master.worker.VelocityCompletionNotifier</prop>
-				<prop key="resource.loader">class</prop>
-				<prop key="class.resource.loader.description">Velocity Classpath Resource Loader</prop>
-				<prop key="class.resource.loader.class">org.apache.velocity.runtime.resource.loader.ClasspathResourceLoader</prop>
-			</props>
-		</constructor-arg>
-	</bean>
-	<bean id="abdera" class="org.apache.abdera.Abdera"/>
-</beans>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/insecure.xml
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/insecure.xml b/server-webapp/src/main/webapp/WEB-INF/insecure.xml
deleted file mode 100644
index 92c0b03..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/insecure.xml
+++ /dev/null
@@ -1,32 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- Copyright (C) 2010-2012 The University of Manchester See the file "LICENSE" 
-	for license terms. -->
-<beans xmlns="http://www.springframework.org/schema/beans"
-	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xmlns:security="http://www.springframework.org/schema/security"
-	xmlns:context="http://www.springframework.org/schema/context"
-	xmlns:util="http://www.springframework.org/schema/util"
-	xsi:schemaLocation="http://cxf.apache.org/configuration/security http://cxf.apache.org/schemas/configuration/security.xsd
-		http://www.springframework.org/schema/security http://www.springframework.org/schema/security/spring-security-3.1.xsd
-		http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.1.xsd
-		http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-3.1.xsd
-		http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.1.xsd">
-
-	<description>
-		The Taverna Server bean, plus supporting configuration.
-		THIS IS AN INSECURE CONFIGURATION!
-	</description>
-
-	<import resource="webappBeans.xml" />
-
-	<context:property-placeholder order="0" ignore-unresolvable="true"
-		 properties-ref="security.override.properties" />
-	<util:properties id="security.override.properties">
-		<prop key="backEndFactory">org.taverna.server.master.localworker.ForkRunFactory</prop>
-		<prop key="fetchCertificateChain">false</prop>
-		<prop key="suppressRewriteEngine">true</prop>
-		<prop key="requiredChannel">any</prop>
-	</util:properties>
-
-	<!-- No JMX support; assume too unsafe. -->
-</beans>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_email.vtmpl
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_email.vtmpl b/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_email.vtmpl
deleted file mode 100644
index d706fed..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_email.vtmpl
+++ /dev/null
@@ -1,15 +0,0 @@
-Your workflow, $name, has #if( $prop_exitcode == 0)finished#{else}failed#{end}.
-
-It started execution at ${startTime}.
-It finished execution at ${finishTime}.
-
-For further information, go to $uriBuilder.build() before the run is
-automatically deleted (currently scheduled to happen at ${expiryTime}).
-
-#if( $prop_exitcode == 0)
-Exit code: $prop_exitcode
-Standard error:
-$prop_stderr
-#end
-
-(This message was automatically generated by Taverna Server ${serverVersion}.)
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_sms.vtmpl
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_sms.vtmpl b/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_sms.vtmpl
deleted file mode 100644
index b595931..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_sms.vtmpl
+++ /dev/null
@@ -1 +0,0 @@
-Taverna Server ${serverVersion}: Workflow "$name" from ${startTime} has #if( $prop_exitcode == 0)finished#{else}failed#{end}.
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_twitter.vtmpl
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_twitter.vtmpl b/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_twitter.vtmpl
deleted file mode 100644
index cd920a7..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/lib/org.taverna.server.master.worker.VelocityCompletionNotifier_twitter.vtmpl
+++ /dev/null
@@ -1 +0,0 @@
-Your workflow, $name, has #if( $prop_exitcode == 0)finished#{else}failed#{end}. $uriBuilder.build() #TavernaServer ${serverVersion}
\ No newline at end of file

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/partsecure.xml
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/partsecure.xml b/server-webapp/src/main/webapp/WEB-INF/partsecure.xml
deleted file mode 100644
index 2e27b81..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/partsecure.xml
+++ /dev/null
@@ -1,36 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- Copyright (C) 2011-2012 The University of Manchester See the file "LICENSE" 
-	for license terms. -->
-<beans xmlns="http://www.springframework.org/schema/beans"
-	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xmlns:context="http://www.springframework.org/schema/context"
-	xmlns:util="http://www.springframework.org/schema/util"
-	xmlns:security="http://www.springframework.org/schema/security"
-	xsi:schemaLocation="http://www.springframework.org/schema/security http://www.springframework.org/schema/security/spring-security-3.1.xsd
-		http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.1.xsd
-		http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-3.1.xsd
-		http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.1.xsd">
-
-	<description>
-		The Taverna Server bean, plus supporting configuration.
-		THIS IS THE CONFIGURATION FOR SEMI-SECURE OPERATION ON WINDOWS.
-	</description>
-
-	<import resource="webappBeans.xml" />
-
-	<!-- This is all the same as the secure config *EXCEPT* for this override. -->
-	<context:property-placeholder order="0" ignore-unresolvable="true"
-		 properties-ref="security.override.properties" />
-	<util:properties id="security.override.properties">
-		<prop key="backEndFactory">org.taverna.server.master.localworker.ForkRunFactory</prop>
-		<prop key="fetchCertificateChain">true</prop>
-		<prop key="suppressRewriteEngine">false</prop>
-		<prop key="requiredChannel">https</prop>
-	</util:properties>
-
-	<bean id="MBeanServer" class="org.springframework.jmx.support.MBeanServerFactoryBean">
-		<property name="locateExistingServerIfPossible" value="true" />
-	</bean>
-	<context:mbean-export server="MBeanServer"
-		default-domain="${my.domain}" registration="ignoreExisting" />
-</beans>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/providers.xml
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/providers.xml b/server-webapp/src/main/webapp/WEB-INF/providers.xml
deleted file mode 100644
index 43531ab..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/providers.xml
+++ /dev/null
@@ -1,96 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- Copyright (C) 2010-2011 The University of Manchester See the file "LICENSE" 
-	for license terms. -->
-<beans xmlns="http://www.springframework.org/schema/beans"
-	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xmlns:util="http://www.springframework.org/schema/util"
-	xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.0.xsd
-		http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-3.0.xsd">
-
-	<import resource="beans.xml" />
-
-	<bean id="ExceptionProvider.BadInputPortName" class="org.taverna.server.master.rest.handler.BadInputPortNameHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.BadPropertyValue" class="org.taverna.server.master.rest.handler.BadPropertyValueHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.BadStateChange" class="org.taverna.server.master.rest.handler.BadStateChangeHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.FilesystemAccess" class="org.taverna.server.master.rest.handler.FilesystemAccessHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.GeneralFailure" class="org.taverna.server.master.rest.handler.GeneralFailureHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.IllegalArgument" class="org.taverna.server.master.rest.handler.IllegalArgumentHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.ImplementationProblem"
-		class="org.taverna.server.master.rest.handler.ImplementationProblemHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.InvalidCredential" class="org.taverna.server.master.rest.handler.InvalidCredentialHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.NoCreate" class="org.taverna.server.master.rest.handler.NoCreateHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.Overloaded" class="org.taverna.server.master.rest.handler.OverloadedHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.NoCredential" class="org.taverna.server.master.rest.handler.NoCredentialHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.NoDestroy" class="org.taverna.server.master.rest.handler.NoDestroyHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.NoDirectoryEntry" class="org.taverna.server.master.rest.handler.NoDirectoryEntryHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.NoListener" class="org.taverna.server.master.rest.handler.NoListenerHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.NoUpdate" class="org.taverna.server.master.rest.handler.NoUpdateHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.NotOwner" class="org.taverna.server.master.rest.handler.NotOwnerHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.UnknownRun" class="org.taverna.server.master.rest.handler.UnknownRunHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.JAXBException" class="org.taverna.server.master.rest.handler.JAXBExceptionHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-	<bean id="ExceptionProvider.AccessDenied" class="org.taverna.server.master.rest.handler.AccessDeniedHandler">
-		<property name="managementModel" ref="webapp.state" />
-	</bean>
-    <bean id="ExceptionProvider.NegotiationFailed" class="org.taverna.server.master.rest.handler.NegotiationFailedHandler">
-    </bean>
-	<bean id="MessagingProvider.File" class="org.taverna.server.master.rest.handler.FileMessageHandler">
-		<property name="maxChunkSize" value="${default.messageSize}" />
-	</bean>
-	<bean id="MessagingProvider.FileConcatenation" class="org.taverna.server.master.rest.handler.FileConcatenationHandler">
-		<property name="maxChunkSize" value="${default.messageSize}" />
-	</bean>
-	<bean id="MessagingProvider.FileSegment" class="org.taverna.server.master.rest.handler.FileSegmentHandler">
-		<property name="maxChunkSize" value="${default.messageSize}" />
-	</bean>
-	<bean id="MessagingProvider.InputStream"
-		class="org.taverna.server.master.rest.handler.InputStreamMessageHandler">
-	</bean>
-	<bean id="MessagingProvider.T2flow" class="org.taverna.server.master.rest.handler.T2FlowDocumentHandler">
-	</bean>
-	<bean id="MessagingProvider.Permission" class="org.taverna.server.master.rest.handler.PermissionHandler">
-	</bean>
-
-	<bean id="Provider.RuntimeExceptionRemapping" class="org.taverna.server.master.utils.RuntimeExceptionWrapper" />
-	<bean id="MessagingProvider.ZipStream" class="org.taverna.server.master.rest.handler.ZipStreamHandler" />
-	<bean id="MessagingProvider.URIList" class="org.taverna.server.master.rest.handler.URIListHandler" />
-	<bean id="Interceptor.FlushThreadLocalCache"
-		class="org.taverna.server.master.utils.FlushThreadLocalCacheInterceptor"
-		lazy-init="false">
-	</bean>
-</beans>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/secure.xml
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/secure.xml b/server-webapp/src/main/webapp/WEB-INF/secure.xml
deleted file mode 100644
index cf08083..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/secure.xml
+++ /dev/null
@@ -1,35 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- Copyright (C) 2010-2012 The University of Manchester See the file "LICENSE" 
-	for license terms. -->
-<beans xmlns="http://www.springframework.org/schema/beans"
-	xmlns:context="http://www.springframework.org/schema/context"
-	xmlns:util="http://www.springframework.org/schema/util"
-	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xmlns:security="http://www.springframework.org/schema/security"
-	xsi:schemaLocation="
-	http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.1.xsd
-	http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-3.1.xsd
-	http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.1.xsd
-	http://www.springframework.org/schema/security http://www.springframework.org/schema/security/spring-security-3.1.xsd">
-
-	<description>
-		The Taverna Server bean, plus supporting configuration.
-		THIS IS THE CONFIGURATION FOR SECURE OPERATION.
-	</description>
-
-	<import resource="webappBeans.xml" />
-
-	<context:property-placeholder order="0" ignore-unresolvable="true"
-		 properties-ref="security.override.properties" />
-	<util:properties id="security.override.properties">
-		<prop key="fetchCertificateChain">true</prop>
-		<prop key="suppressRewriteEngine">false</prop>
-		<prop key="requiredChannel">https</prop>
-	</util:properties>
-
-	<bean id="MBeanServer" class="org.springframework.jmx.support.MBeanServerFactoryBean">
-		<property name="locateExistingServerIfPossible" value="true" />
-	</bean>
-	<context:mbean-export server="MBeanServer"
-		default-domain="${my.domain}" registration="ignoreExisting" />
-</beans>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/security/users.properties
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/security/users.properties b/server-webapp/src/main/webapp/WEB-INF/security/users.properties
deleted file mode 100644
index 03f8436..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/security/users.properties
+++ /dev/null
@@ -1,48 +0,0 @@
-# This is a Java properties file that defines the default users supported by
-# Taverna Server. The keys are the user names, and the values are comma-
-# -separated lists of values: the first is the password (which must not have
-# any spaces or commas in) and the last is "enabled" or "disabled" to indicate
-# whether this user is actually allowed to log in or not. The values between
-# are the authorities associated with the user: these are either roles (which
-# describe a particular set of permissions for the user) or user mappings.
-#
-# The supported set of authorities are:
-#
-#   ROLE_tavernauser      - may use the standard Taverna Server interfaces
-#
-#   ROLE_tavernasuperuser - may use the admin interfaces and see *all*
-#                           workflow runs irrespective of permissions
-#
-#   LOCALUSER_*           - map the server user to the given local system
-#                           account (i.e., the account name is in place of the
-#                           "*" in the authority); don't grant two of these
-#                           authorities at once, or confusion will reign
-#
-# Note that it is usually better to define accounts via the administrative
-# interface or through the JMX interface because those can then be modified
-# without restarting the server; anything in this file is fixed until the
-# next server restart. This file exists mainly to allow permissions for the
-# admin interface to be boot-strapped.
-
-# ---------------------------------------------------------------------
-
-# A normal user. Must have given role (ROLE_tavernauser) to use Taverna Server.
-# The user has password "taverna" and is enabled. The default mapping to user
-# accounts - using the user name - will be used.
-
-taverna: taverna,ROLE_tavernauser,enabled
-
-# Another normal user (username: "taverna_alt"). Will be mapped to the system
-# account called "taverna", but the user is currently disabled.
-
-taverna_alt: qwerty,ROLE_tavernauser,LOCALUSER_taverna,disabled
-
-# The default admin user, who has password "admin". You should change this!
-# Admin users also have ROLE_tavernasuperuser, which grants access to the
-# server's /admin pages and allows all workflow runs to be seen (if the
-# ROLE_tavernauser is also assigned, as below; one does not imply the other).
-# If you don't have any enabled admin users, you'll need to use JMX to do
-# management operations (JMX is only accessible from the local host and by
-# the overall container user or the system administrator).
-
-admin: admin,ROLE_tavernauser,ROLE_tavernasuperuser,LOCALUSER_taverna,enabled

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/tavernaserver.properties
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/tavernaserver.properties b/server-webapp/src/main/webapp/WEB-INF/tavernaserver.properties
deleted file mode 100644
index 9616a45..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/tavernaserver.properties
+++ /dev/null
@@ -1,77 +0,0 @@
-# Override the hostname, port and webapp; leave at 'NONE' if no override
-# desired. If set, set it to something like:
-#      foo.example.com:8000/tav-serv
-default.webapp:			NONE
-# User name to use if nothing else specified
-default.localusername:	taverna
-# How to pick a user name out of a global identity
-localusernameregexp:	^TAVERNAUSER=(.*)$
-# General defaults
-default.logworkflows:	false
-default.logexceptions:	false
-default.permitsubmit:	true
-default.lifetime:		1440
-default.runlimit:		100
-default.operatinglimit:	10
-default.messageSize:	65536
-#taverna.preferredUserUri:	https://some.host:8443/tavernaserver/rest/
-http.realmName:         tavernaserver
-
-rmi.localhostOnly:		true
-helio.cis.enableTokenPassing:	false
-log.security.details:	false
-
-#executeWorkflowScript:	/usr/taverna/executeworkflow.sh
-#secureForkPasswordFile:	/usr/local/tomcat6.0/conf/sudopass.txt
-
-# Usage Record handling
-usage.logFile:		none
-usage.disableDB:	no
-
-# Delays used in the task executor 
-purge.interval:		30000
-finish.interval:	10000
-
-# Static configuration of messaging
-
-### Email
-email.from:		taverna.server@localhost
-email.type:		text/plain
-#email.host:	localhost
-
-### Jabber
-#xmpp.server:	xmpp://some.host:5222
-xmpp.resource:	TavernaServer
-#xmpp.user:		taverna
-#xmpp.password:	*******
-
-### Atom/RSS; lifespan in days, cleaninterval in milliseconds
-atom.language:	en
-atom.lifespan:	7
-atom.cleaninterval:	3600000
-
-### SMS
-#sms.service:	https://www.intellisoftware.co.uk/smsgateway/sendmsg.aspx
-sms.userfield:	username
-sms.passfield:	password
-sms.destfield:	to
-sms.msgfield:	text
-#sms.user:		taverna
-#sms.pass:		*******
-
-### Twitter
-#twitter.oauth.accessToken:			...
-#twitter.oauth.accessTokenSecret:	...
-
-### General; cooldown in seconds
-message.cooldown:				300
-message.termination.subject:	Taverna workflow run finished
-message.termination.body:		Your job with ID={0} has finished with exit code {1,number,integer}.
-
-# Thread pool sizing
-pool.size:	2
-
-taverna.interaction.host:			none
-taverna.interaction.port:			none
-taverna.interaction.webdav_path:	none
-taverna.interaction.feed_path:		none

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/web-nosec.xml
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/web-nosec.xml b/server-webapp/src/main/webapp/WEB-INF/web-nosec.xml
deleted file mode 100644
index d6c6ee7..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/web-nosec.xml
+++ /dev/null
@@ -1,79 +0,0 @@
-<?xml version="1.0" encoding="ISO-8859-1"?>
-<!DOCTYPE web-app
-    PUBLIC "-//Sun Microsystems, Inc.//DTD Web Application 2.3//EN"
-    "http://java.sun.com/dtd/web-app_2_3.dtd">
-
-<!-- Copyright (C) 2010-2011 The University of Manchester See the file "LICENSE" 
-	for license terms. -->
-<web-app id="TAVSERV-2.5.4">
-	<display-name>Taverna 2.5.4 Server</display-name>
-	<description>This is the front-end engine for Taverna 2.5.4 Server.</description>
-	<context-param>
-		<param-name>contextConfigLocation</param-name>
-		<param-value>WEB-INF/insecure.xml</param-value>
-		<description>Where Spring is to load its bean definitions from. DO NOT
-			CHANGE WITHOUT CONSULTING DOCUMENTATION.</description>
-	</context-param>
-	<context-param>
-		<param-name>log4jExposeWebAppRoot</param-name>
-		<param-value>false</param-value>
-		<description>
-			THIS IS STUPID! We have to do this so that Tomcat webapps do not
-			leak their configurations into each other via the log4j support
-			trying to be "smart".
-			http://javacolors.blogspot.co.uk/2010/08/tomcat-and-webxmls-webapprootkey.html
-			If you change this, good luck hunting down the weird crashes.
-		</description>
-	</context-param>
-
-	<filter>
-		<filter-name>springSecurityFilterChain</filter-name>
-		<filter-class>org.springframework.web.filter.DelegatingFilterProxy</filter-class>
-	</filter>
-	<filter-mapping>
-		<filter-name>springSecurityFilterChain</filter-name>
-		<url-pattern>/*</url-pattern>
-	</filter-mapping>
-	<listener>
-		<listener-class>
-			org.springframework.web.context.request.RequestContextListener
-		</listener-class>
-	</listener>
-	<listener>
-		<listener-class>
-			org.springframework.web.util.Log4jConfigListener
-		</listener-class>
-	</listener>
-	<listener>
-		<listener-class>
-			org.springframework.web.context.ContextLoaderListener
-		</listener-class>
-	</listener>
-
-	<servlet>
-		<servlet-name>CXFServlet</servlet-name>
-		<display-name>CXF Servlet</display-name>
-		<servlet-class>
-			org.apache.cxf.transport.servlet.CXFServlet
-		</servlet-class>
-		<load-on-startup>1</load-on-startup>
-	</servlet>
-
-	<servlet-mapping>
-		<servlet-name>CXFServlet</servlet-name>
-		<url-pattern>/*</url-pattern>
-	</servlet-mapping>
-
-	<resource-ref>
-		<description>
-			Resource reference to a factory for javax.mail.Session
-			instances that may be used for sending electronic mail
-			messages, preconfigured to connect to the appropriate
-			SMTP server.
-		</description>
-		<res-ref-name>mail/Session</res-ref-name>
-		<res-type>javax.mail.Session</res-type>
-		<res-auth>Container</res-auth>
-		<res-sharing-scope>Shareable</res-sharing-scope>
-	</resource-ref>
-</web-app>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/web-partsec.xml
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/web-partsec.xml b/server-webapp/src/main/webapp/WEB-INF/web-partsec.xml
deleted file mode 100644
index a2b545e..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/web-partsec.xml
+++ /dev/null
@@ -1,79 +0,0 @@
-<?xml version="1.0" encoding="ISO-8859-1"?>
-<!DOCTYPE web-app
-    PUBLIC "-//Sun Microsystems, Inc.//DTD Web Application 2.3//EN"
-    "http://java.sun.com/dtd/web-app_2_3.dtd">
-
-<!-- Copyright (C) 2010-2011 The University of Manchester See the file "LICENSE" 
-	for license terms. -->
-<web-app id="TAVSERV-2.5.4">
-	<display-name>Taverna 2.5.4 Server</display-name>
-	<description>This is the front-end engine for Taverna 2.5.4 Server.</description>
-	<context-param>
-		<param-name>contextConfigLocation</param-name>
-		<param-value>WEB-INF/partsecure.xml</param-value>
-		<description>Where Spring is to load its bean definitions from. DO NOT
-			CHANGE WITHOUT CONSULTING DOCUMENTATION.</description>
-	</context-param>
-	<context-param>
-		<param-name>log4jExposeWebAppRoot</param-name>
-		<param-value>false</param-value>
-		<description>
-			THIS IS STUPID! We have to do this so that Tomcat webapps do not
-			leak their configurations into each other via the log4j support
-			trying to be "smart".
-			http://javacolors.blogspot.co.uk/2010/08/tomcat-and-webxmls-webapprootkey.html
-			If you change this, good luck hunting down the weird crashes.
-		</description>
-	</context-param>
-
-	<filter>
-		<filter-name>springSecurityFilterChain</filter-name>
-		<filter-class>org.springframework.web.filter.DelegatingFilterProxy</filter-class>
-	</filter>
-	<filter-mapping>
-		<filter-name>springSecurityFilterChain</filter-name>
-		<url-pattern>/*</url-pattern>
-	</filter-mapping>
-	<listener>
-		<listener-class>
-			org.springframework.web.context.request.RequestContextListener
-		</listener-class>
-	</listener>
-	<listener>
-		<listener-class>
-			org.springframework.web.util.Log4jConfigListener
-		</listener-class>
-	</listener>
-	<listener>
-		<listener-class>
-			org.springframework.web.context.ContextLoaderListener
-		</listener-class>
-	</listener>
-
-	<servlet>
-		<servlet-name>CXFServlet</servlet-name>
-		<display-name>CXF Servlet</display-name>
-		<servlet-class>
-			org.apache.cxf.transport.servlet.CXFServlet
-		</servlet-class>
-		<load-on-startup>1</load-on-startup>
-	</servlet>
-
-	<servlet-mapping>
-		<servlet-name>CXFServlet</servlet-name>
-		<url-pattern>/*</url-pattern>
-	</servlet-mapping>
-
-	<resource-ref>
-		<description>
-			Resource reference to a factory for javax.mail.Session
-			instances that may be used for sending electronic mail
-			messages, preconfigured to connect to the appropriate
-			SMTP server.
-		</description>
-		<res-ref-name>mail/Session</res-ref-name>
-		<res-type>javax.mail.Session</res-type>
-		<res-auth>Container</res-auth>
-		<res-sharing-scope>Shareable</res-sharing-scope>
-	</resource-ref>
-</web-app>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/web-sec.xml
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/web-sec.xml b/server-webapp/src/main/webapp/WEB-INF/web-sec.xml
deleted file mode 100644
index 9a5395a..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/web-sec.xml
+++ /dev/null
@@ -1,79 +0,0 @@
-<?xml version="1.0" encoding="ISO-8859-1"?>
-<!DOCTYPE web-app
-    PUBLIC "-//Sun Microsystems, Inc.//DTD Web Application 2.3//EN"
-    "http://java.sun.com/dtd/web-app_2_3.dtd">
-
-<!-- Copyright (C) 2010-2011 The University of Manchester See the file "LICENSE" 
-	for license terms. -->
-<web-app id="TAVSERV-2.5.4">
-	<display-name>Taverna 2.5.4 Server</display-name>
-	<description>This is the front-end engine for Taverna 2.5.4 Server.</description>
-	<context-param>
-		<param-name>contextConfigLocation</param-name>
-		<param-value>WEB-INF/secure.xml</param-value>
-		<description>Where Spring is to load its bean definitions from. DO NOT
-			CHANGE WITHOUT CONSULTING DOCUMENTATION.</description>
-	</context-param>
-	<context-param>
-		<param-name>log4jExposeWebAppRoot</param-name>
-		<param-value>false</param-value>
-		<description>
-			THIS IS STUPID! We have to do this so that Tomcat webapps do not
-			leak their configurations into each other via the log4j support
-			trying to be "smart".
-			http://javacolors.blogspot.co.uk/2010/08/tomcat-and-webxmls-webapprootkey.html
-			If you change this, good luck hunting down the weird crashes.
-		</description>
-	</context-param>
-
-	<filter>
-		<filter-name>springSecurityFilterChain</filter-name>
-		<filter-class>org.springframework.web.filter.DelegatingFilterProxy</filter-class>
-	</filter>
-	<filter-mapping>
-		<filter-name>springSecurityFilterChain</filter-name>
-		<url-pattern>/*</url-pattern>
-	</filter-mapping>
-	<listener>
-		<listener-class>
-			org.springframework.web.context.request.RequestContextListener
-		</listener-class>
-	</listener>
-	<listener>
-		<listener-class>
-			org.springframework.web.util.Log4jConfigListener
-		</listener-class>
-	</listener>
-	<listener>
-		<listener-class>
-			org.springframework.web.context.ContextLoaderListener
-		</listener-class>
-	</listener>
-
-	<servlet>
-		<servlet-name>CXFServlet</servlet-name>
-		<display-name>CXF Servlet</display-name>
-		<servlet-class>
-			org.apache.cxf.transport.servlet.CXFServlet
-		</servlet-class>
-		<load-on-startup>1</load-on-startup>
-	</servlet>
-
-	<servlet-mapping>
-		<servlet-name>CXFServlet</servlet-name>
-		<url-pattern>/*</url-pattern>
-	</servlet-mapping>
-
-	<resource-ref>
-		<description>
-			Resource reference to a factory for javax.mail.Session
-			instances that may be used for sending electronic mail
-			messages, preconfigured to connect to the appropriate
-			SMTP server.
-		</description>
-		<res-ref-name>mail/Session</res-ref-name>
-		<res-type>javax.mail.Session</res-type>
-		<res-auth>Container</res-auth>
-		<res-sharing-scope>Shareable</res-sharing-scope>
-	</resource-ref>
-</web-app>

http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/27cbb9cb/server-webapp/src/main/webapp/WEB-INF/webappBeans.xml
----------------------------------------------------------------------
diff --git a/server-webapp/src/main/webapp/WEB-INF/webappBeans.xml b/server-webapp/src/main/webapp/WEB-INF/webappBeans.xml
deleted file mode 100644
index 22e74b3..0000000
--- a/server-webapp/src/main/webapp/WEB-INF/webappBeans.xml
+++ /dev/null
@@ -1,213 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- Copyright (C) 2010-2012 The University of Manchester See the file "LICENSE" 
-	for license terms. -->
-<beans xmlns="http://www.springframework.org/schema/beans"
-	xmlns:context="http://www.springframework.org/schema/context"
-	xmlns:aop="http://www.springframework.org/schema/aop"
-	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xmlns:jaxrs="http://cxf.apache.org/jaxrs"
-	xmlns:jaxws="http://cxf.apache.org/jaxws"
-	xmlns:cxf="http://cxf.apache.org/core"
-	xmlns:security="http://www.springframework.org/schema/security"
-	xmlns:util="http://www.springframework.org/schema/util"
-	xsi:schemaLocation="http://www.springframework.org/schema/aop http://www.springframework.org/schema/aop/spring-aop-3.1.xsd
-		http://cxf.apache.org/configuration/security http://cxf.apache.org/schemas/configuration/security.xsd
-		http://cxf.apache.org/core http://cxf.apache.org/schemas/core.xsd
-		http://www.springframework.org/schema/security http://www.springframework.org/schema/security/spring-security-3.1.xsd
-		http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.1.xsd
-		http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-3.1.xsd
-		http://cxf.apache.org/jaxws http://cxf.apache.org/schemas/jaxws.xsd
-		http://cxf.apache.org/jaxrs http://cxf.apache.org/schemas/jaxrs.xsd
-		http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.1.xsd">
-
-	<description>
-		The Taverna Server bean, plus supporting configuration.
-	</description>
-
-	<import resource="classpath:META-INF/cxf/cxf.xml" />
-	<import resource="providers.xml" />
-
-	<context:annotation-config />
-	<context:component-scan base-package="org.taverna.server" />
-	<bean id="servletContextPropertyConfigurer"
-		class="org.springframework.context.support.PropertySourcesPlaceholderConfigurer">
-		<property name="ignoreUnresolvablePlaceholders" value="true" />
-		<property name="localOverride" value="true" />
-		<property name="order" value="0" />
-		<property name="location" value="/WEB-INF/tavernaserver.properties" />
-	</bean>
-
-	<jaxws:server id="master_SOAP"
-		serviceClass="org.taverna.server.master.TavernaServer" address="/soap">
-		<jaxws:serviceBean>
-			<ref bean="webapp" />
-		</jaxws:serviceBean>
-		<jaxws:properties>
-			<entry key="mtom-enabled" value="true" />
-		</jaxws:properties>
-		<!-- <jaxws:dataBinding><ref bean="addStylesheet"/></jaxws:dataBinding> -->
-	</jaxws:server>
-
-	<jaxrs:server id="root_REST" address="/">
-		<jaxrs:serviceBeans>
-			<ref bean="root_facade" />
-		</jaxrs:serviceBeans>
-		<jaxrs:properties>
-			<entry key="org.apache.cxf.endpoint.private" value="true" />
-		</jaxrs:properties>
-	</jaxrs:server>
-
-	<jaxrs:server id="master_REST" address="/rest"
-		staticSubresourceResolution="true">
-		<jaxrs:serviceBeans>
-			<ref bean="webapp" />
-		</jaxrs:serviceBeans>
-		<jaxrs:features>
-			<!-- <cxf:logging /> --><!-- NOISY! -->
-		</jaxrs:features>
-		<jaxrs:providers>
-			<ref bean="ExceptionProvider.AccessDenied" />
-			<ref bean="ExceptionProvider.BadInputPortName" />
-			<ref bean="ExceptionProvider.BadPropertyValue" />
-			<ref bean="ExceptionProvider.BadStateChange" />
-			<ref bean="ExceptionProvider.FilesystemAccess" />
-			<ref bean="ExceptionProvider.GeneralFailure" />
-			<ref bean="ExceptionProvider.IllegalArgument" />
-			<ref bean="ExceptionProvider.ImplementationProblem" />
-			<ref bean="ExceptionProvider.InvalidCredential" />
-			<ref bean="ExceptionProvider.JAXBException" />
-			<ref bean="ExceptionProvider.NegotiationFailed" />
-			<ref bean="ExceptionProvider.NoCreate" />
-			<ref bean="ExceptionProvider.NoCredential" />
-			<ref bean="ExceptionProvider.NoDestroy" />
-			<ref bean="ExceptionProvider.NoDirectoryEntry" />
-			<ref bean="ExceptionProvider.NoListener" />
-			<ref bean="ExceptionProvider.NoUpdate" />
-			<ref bean="ExceptionProvider.NotOwner" />
-			<ref bean="ExceptionProvider.Overloaded" />
-			<ref bean="ExceptionProvider.UnknownRun" />
-			<ref bean="MessagingProvider.File" />
-			<ref bean="MessagingProvider.FileConcatenation" />
-			<ref bean="MessagingProvider.FileSegment" />
-			<ref bean="MessagingProvider.InputStream" />
-			<ref bean="MessagingProvider.T2flow" />
-			<ref bean="MessagingProvider.Permission" />
-			<ref bean="MessagingProvider.URIList" />
-			<ref bean="MessagingProvider.ZipStream" />
-			<ref bean="jsonProvider" />
-			<ref bean="atomEntryHandler" />
-			<ref bean="atomFeedHandler" />
-			<bean class="org.apache.cxf.jaxrs.model.wadl.WadlGenerator">
-				<property name="addResourceAndMethodIds" value="true"/>
-			</bean>
-		</jaxrs:providers>
-		<jaxrs:outInterceptors>
-			<ref bean="Interceptor.FlushThreadLocalCache" />
-		</jaxrs:outInterceptors>
- 	</jaxrs:server>
-
-	<jaxrs:server id="AtomFeed" address="/feed">
-		<jaxrs:serviceBeans>
-			<ref bean="feed" />
-		</jaxrs:serviceBeans>
-		<jaxrs:properties>
-			<entry key="org.apache.cxf.endpoint.private" value="true" />
-		</jaxrs:properties>
-		<jaxrs:providers>
-			<ref bean="atomEntryHandler" />
-			<ref bean="atomFeedHandler" />
-		</jaxrs:providers>
-	</jaxrs:server>
-
-	<jaxrs:server id="AdministrationInterface" address="/admin"
-		staticSubresourceResolution="true">
-		<jaxrs:serviceBeans>
-			<ref bean="admin" />
-		</jaxrs:serviceBeans>
-		<jaxrs:providers>
-			<ref bean="jsonProvider" />
-		</jaxrs:providers>
-	</jaxrs:server>
-
-	<bean id="jsonProvider" class="org.apache.cxf.jaxrs.provider.json.JSONProvider">
-		<property name="ignoreNamespaces" value="true" />
-		<property name="namespaceMap" ref="jsonNamespaceMap" />
-	</bean>
-	<util:map id="jsonNamespaceMap" key-type="java.lang.String"
-		value-type="java.lang.String">
-		<entry key="http://www.w3.org/1999/xlink" value="" />
-		<entry key="http://www.w3.org/2000/09/xmldsig#" value="" />
-		<entry key="http://schema.ogf.org/urf/2003/09/urf" value="" />
-		<entry key="http://ns.taverna.org.uk/2010/xml/server/" value="" />
-		<entry key="http://ns.taverna.org.uk/2010/xml/server/rest/" value="" />
-		<entry key="http://ns.taverna.org.uk/2010/xml/server/soap/" value="" />
-		<entry key="http://ns.taverna.org.uk/2010/xml/server/feed/" value="" />
-		<entry key="http://ns.taverna.org.uk/2010/xml/server/admin/" value="" />
-		<entry key="http://ns.taverna.org.uk/2010/port/" value="" />
-		<entry key="http://ns.taverna.org.uk/2010/run/" value="" />
-	</util:map>
-
-	<bean id="root_facade" class="org.taverna.server.master.facade.Facade">
-		<property name="file" value="/welcome.html" />
-		<property name="contextualizer" ref="contextualizer" />
-	</bean>
-
-	<bean class="org.taverna.server.master.common.Uri.Rewriter"
-		autowire="byType" id="URI-Rewriter-Thunk">
-		<property name="suppressSecurity" value="${suppressRewriteEngine}" />
-		<property name="rewriteTarget" value="${default.webapp}" />
-	</bean>
-	<security:authentication-manager>
-		<security:authentication-provider ref="workflowInternalAuthProvder" />
-		<security:authentication-provider ref="authProvider" />
-	</security:authentication-manager>
-
-	<bean id="WSDLHeadOptionsInterceptor"
-		class="org.taverna.server.master.utils.WSDLHeadOptionsInterceptor" />
-	<cxf:bus>
-		<cxf:inInterceptors>
-			<ref bean="WSDLHeadOptionsInterceptor" />
-		</cxf:inInterceptors>
-	</cxf:bus>
-
-	<aop:aspectj-autoproxy proxy-target-class="true" />
-	<security:global-method-security
-		jsr250-annotations="enabled" />
-
-	<security:http realm="${http.realmName}" create-session="never"
-		use-expressions="true">
-		<security:http-basic />
-		<security:intercept-url pattern="/"
-			requires-channel="any" access="permitAll" />
-		<security:intercept-url pattern="/rest"
-			requires-channel="${requiredChannel}" access="permitAll" />
-		<security:intercept-url pattern="/rest/"
-			requires-channel="${requiredChannel}" access="permitAll" />
-		<security:intercept-url pattern="/rest/policy"
-			requires-channel="${requiredChannel}" access="permitAll" />
-		<security:intercept-url pattern="/rest/policy/"
-			requires-channel="${requiredChannel}" access="permitAll" />
-		<security:intercept-url pattern="/services/**"
-			requires-channel="${requiredChannel}" access="permitAll" />
-		<security:intercept-url pattern="/soap/**" method="GET"
-			requires-channel="${requiredChannel}" access="permitAll" />
-		<security:intercept-url pattern="/soap/**" method="POST"
-			requires-channel="${requiredChannel}"
-			access="hasRole('ROLE_tavernauser')" />
-		<security:intercept-url pattern="/admin"
-			requires-channel="${requiredChannel}"
-			access="hasRole('ROLE_tavernasuperuser')" />
-		<security:intercept-url pattern="/admin/**"
-			requires-channel="${requiredChannel}"
-			access="hasRole('ROLE_tavernasuperuser')" />
-		<security:intercept-url pattern="/rest/**"
-			requires-channel="${requiredChannel}"
-			access="hasAnyRole('ROLE_tavernauser','ROLE_tavernaworkflow')" />
-		<security:intercept-url pattern="/feed"
-			requires-channel="${requiredChannel}"
-			access="hasRole('ROLE_tavernauser')" />
-		<security:intercept-url pattern="/feed/**"
-			requires-channel="${requiredChannel}"
-			access="hasRole('ROLE_tavernauser')" />
-	</security:http>
-</beans>