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Posted to dev@airavata.apache.org by "Marru, Suresh" <sm...@iu.edu> on 2015/04/29 19:00:29 UTC
Re: [SciGaP-Project] How to get experiment output?
Hi Kenneth,
Sorry we dropped the ball on this one. We will look into your errors and get back.
Suresh
> On Apr 29, 2015, at 12:23 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>
>
> The test-drive sdsc portal is still failing. Now, I can't
> even look at old successful expermients. The error is:
>
> Allowed memory size of 134217728 bytes exhausted (tried to allocate 184549633 bytes)
>
>
> On Wed, Apr 22, 2015 at 10:10:05AM -0700, K Yoshimoto wrote:
>>
>> Just following up on this failure. I'm going to cc scigap list
>> also.
>>
>> Kenneth
>>
>> On Fri, Apr 17, 2015 at 11:19:33AM -0700, K Yoshimoto wrote:
>>>
>>> Hi Nipurn,
>>>
>>> The Echo example works for me now. I can see STDOUT when
>>> the job is completed. Do you have a commandline client example
>>> of retrieving this? Java client call is fine, Python is better.
>>>
>>> I am running into a problem running a test experiment of my own.
>>>
>>> Is there a way to get the full stack trace or other logs?
>>>
>>> I get the following error output:
>>> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_9041c4bd-5af4-4485-bfe5-1baa062ce664
>>>
>>> Compute resource trestles-login2.sdsc.edu
>>> Experiment Status FAILED
>>> Job Status SETUP
>>> Creation time 2015-04-17 18:15:06
>>> Update time 2015-04-17 18:15:10
>>> Inputs
>>>
>>> arg1: -c
>>>
>>> arg2: /bin/hostname
>>> Outputs Experiment hasn't completed. Experiment Status is : FAILED
>>> Errors Error while initializing provider org.apache.airavata.gfac.ssh.provider.impl.SSHProvider.
>>>
>>> Kenneth
>>>
>>> On Fri, Apr 17, 2015 at 11:11:00AM -0400, Nipurn Doshi wrote:
>>>> Hi Kenneth,
>>>>
>>>> The issue is resolved. You can now use -
>>>> http://dev.test-drive.airavata.org/portal/sdsc/public/
>>>> We ran several echo jobs and all seem to be good.
>>>>
>>>>
>>>>
>>>> On Thu, Apr 16, 2015 at 9:31 PM, Chathuri Wimalasena <ka...@gmail.com>
>>>> wrote:
>>>>
>>>>> Dev PGA should be working now Kenneth.
>>>>>
>>>>> On Thu, Apr 16, 2015 at 5:46 PM, K Yoshimoto <ke...@sdsc.edu> wrote:
>>>>>
>>>>>>
>>>>>> Nipurn,
>>>>>>
>>>>>> Thanks for looking into this. Please send an email update
>>>>>> to the list when it's good to try again.
>>>>>>
>>>>>> Kenneth
>>>>>>
>>>>>> On Thu, Apr 16, 2015 at 05:42:01PM -0400, Nipurn Doshi wrote:
>>>>>>> Hi Kenneth,
>>>>>>>
>>>>>>> We figured out the errors and found out that some of the old PGA code
>>>>>>> hadn't made their way to the commits.
>>>>>>> Although, we fixed them, right now we are facing the issue of
>>>>>> Experiments
>>>>>>> not launching on SDSC Dev Portal. The problem looks trivial and we hope
>>>>>> to
>>>>>>> fix it by either today evening or max tomorrow morning.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Thu, Apr 16, 2015 at 4:03 PM, Nipurn Doshi <ni...@umail.iu.edu>
>>>>>> wrote:
>>>>>>>
>>>>>>>> We checked and this error exists in sdsc portal. We will report as
>>>>>> soon as
>>>>>>>> the bug is fixed.
>>>>>>>>
>>>>>>>>
>>>>>>>> On Thu, Apr 16, 2015 at 3:33 PM, K Yoshimoto <ke...@sdsc.edu>
>>>>>> wrote:
>>>>>>>>
>>>>>>>>>
>>>>>>>>> My Experiment Summary does not have STDOUT and STDERR links,
>>>>>>>>> rather it just has this text:
>>>>>>>>>
>>>>>>>>> Outputs Experiment hasn't completed. Experiment Status is :
>>>>>>>>> COMPLETED
>>>>>>>>>
>>>>>>>>> Is there someone who can investigate this experiment?
>>>>>>>>>
>>>>>>>>>
>>>>>> http://dev.test-drive.airavata.org/portal/sdsc/public/experiment/summary?expId=shelltest_4f04d8a7-85a8-4ae4-aa07-f9e6dce7c016
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Thu, Apr 16, 2015 at 03:27:27PM -0400, Eroma Abeysinghe wrote:
>>>>>>>>>> Hi Kenneth,
>>>>>>>>>>
>>>>>>>>>> If the experiment is completed successfully; should be able to
>>>>>> click on
>>>>>>>>> the
>>>>>>>>>> STDOUT link and view the output.
>>>>>>>>>> Please see the attached image
>>>>>>>>>>
>>>>>>>>>> Hope this helps
>>>>>>>>>>
>>>>>>>>>> Thanks,
>>>>>>>>>> Eroma
>>>>>>>>>>
>>>>>>>>>> On Thu, Apr 16, 2015 at 3:13 PM, K Yoshimoto <ke...@sdsc.edu>
>>>>>> wrote:
>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> Thanks, Eroma.
>>>>>>>>>>>
>>>>>>>>>>> I see the Experiment Summary for this experiment. There is
>>>>>>>>>>> no STDOUT field. This is for the echo experiment. There is
>>>>>>>>>>> an Outputs field:
>>>>>>>>>>>
>>>>>>>>>>> Outputs Experiment hasn't completed. Experiment Status
>>>>>> is :
>>>>>>>>>>> COMPLETED
>>>>>>>>>>>
>>>>>>>>>>> Kenneth
>>>>>>>>>>>
>>>>>>>>>>> On Thu, Apr 16, 2015 at 03:08:50PM -0400, Eroma Abeysinghe wrote:
>>>>>>>>>>>> Hi Kenneth,
>>>>>>>>>>>>
>>>>>>>>>>>> If you are using the portal (
>>>>>>>>> http://dev.test-drive.airavata.org/portal)
>>>>>>>>>>>> you can view the output in STDOUT
>>>>>>>>>>>>
>>>>>>>>>>>> For this search for the experiment (Main Menu --> Experiment
>>>>>> -->
>>>>>>>>> Search
>>>>>>>>>>>> Page) and STDOUT is in the Experiment Summary Page
>>>>>>>>>>>>
>>>>>>>>>>>> Hope this helps
>>>>>>>>>>>>
>>>>>>>>>>>> Thanks,
>>>>>>>>>>>> Eroma
>>>>>>>>>>>>
>>>>>>>>>>>> On Thu, Apr 16, 2015 at 2:33 PM, K Yoshimoto <kenneth@sdsc.edu
>>>>>>>
>>>>>>>>> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> I am able to run the echo application in an experiment on
>>>>>>>>>>>>> the test-drive portal. How do I get the output from the
>>>>>>>>>>>>> experiment?
>>>>>>>>>>>>>
>>>>>>>>>>>>> Kenneth
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> --
>>>>>>>>>>>> Thank You,
>>>>>>>>>>>> Best Regards,
>>>>>>>>>>>> Eroma
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> Thank You,
>>>>>>>>>> Best Regards,
>>>>>>>>>> Eroma
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> -Sincerely,
>>>>>>>> Nipurn Doshi
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> -Sincerely,
>>>>>>> Nipurn Doshi
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> -Sincerely,
>>>> Nipurn Doshi
>
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