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Posted to dev@taverna.apache.org by "Stian Soiland-Reyes (JIRA)" <ji...@apache.org> on 2016/01/15 16:59:39 UTC
[jira] [Comment Edited] (TAVERNA-883) Find valid OSGi bundles for
Woden
[ https://issues.apache.org/jira/browse/TAVERNA-883?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15101966#comment-15101966 ]
Stian Soiland-Reyes edited comment on TAVERNA-883 at 1/15/16 3:59 PM:
----------------------------------------------------------------------
Caused by outdated / out of sync dependency from incubator-taverna-common-activities/taverna-wsdl-generic/pom.xml
{code}
<dependency>
<groupId>org.apache.ws.xmlschema</groupId>
<artifactId>xmlschema-core</artifactId>
<version>2.1.0</version>
</dependency>
{code}
Updating this to version 2.2.1 should fix the OSGi loading to be in sync with woden - but fails compilation of wsdl-generic itself:
{code}
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.2:compile (default-compile) on project taverna-wsdl-generic: Compilation failure: Compilation failure:
[ERROR] /home/stain/src/taverna/incubator-taverna-common-activities/taverna-wsdl-generic/src/main/java/org/apache/taverna/wsdl/parser/TypeDescriptors.java:[372,53] incompatible types: org.apache.ws.commons.schema.XmlSchemaAllMember cannot be converted to org.apache.ws.commons.schema.XmlSchemaElement
[ERROR] /home/stain/src/taverna/incubator-taverna-common-activities/taverna-wsdl-generic/src/main/java/org/apache/taverna/wsdl/parser/TypeDescriptors.java:[383,54] incompatible types: java.util.List<org.apache.ws.commons.schema.XmlSchemaChoiceMember> cannot be converted to java.util.List<org.apache.ws.commons.schema.XmlSchemaObject>
{code}
was (Author: stain):
Caused by outdated / out of sync dependency:
{code}
<dependency>
<groupId>org.apache.ws.xmlschema</groupId>
<artifactId>xmlschema-core</artifactId>
<version>2.1.0</version>
</dependency>
{code}
Updating this to version 2.2.1 should fix the OSGi loading to be in sync with woden - but fails compilation of wsdl-generic itself:
{code}
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.2:compile (default-compile) on project taverna-wsdl-generic: Compilation failure: Compilation failure:
[ERROR] /home/stain/src/taverna/incubator-taverna-common-activities/taverna-wsdl-generic/src/main/java/org/apache/taverna/wsdl/parser/TypeDescriptors.java:[372,53] incompatible types: org.apache.ws.commons.schema.XmlSchemaAllMember cannot be converted to org.apache.ws.commons.schema.XmlSchemaElement
[ERROR] /home/stain/src/taverna/incubator-taverna-common-activities/taverna-wsdl-generic/src/main/java/org/apache/taverna/wsdl/parser/TypeDescriptors.java:[383,54] incompatible types: java.util.List<org.apache.ws.commons.schema.XmlSchemaChoiceMember> cannot be converted to java.util.List<org.apache.ws.commons.schema.XmlSchemaObject>
{code}
> Find valid OSGi bundles for Woden
> ---------------------------------
>
> Key: TAVERNA-883
> URL: https://issues.apache.org/jira/browse/TAVERNA-883
> Project: Apache Taverna
> Issue Type: Bug
> Components: Taverna Commandline, Taverna Common Activities
> Reporter: Stian Soiland-Reyes
> Labels: osgi
>
> wsdl-activity uses Woden, which does not seem to have a valid OSGi bundle dependency for org.apache.ws.security.*
> This prevents the command line from starting up.
> Perhaps updating the Woden dependency would work? Otherwise change to embed the dependency from wsdl-activity, as with Embed-Dependency in https://github.com/apache/incubator-taverna-common-activities/blob/master/taverna-beanshell-activity/pom.xml#L22
> {code}
> stain@biggie:~/src/taverna/incubator-taverna-commandline/taverna-commandline-product$ mvn clean install
> [INFO] Scanning for projects...
> [INFO]
> [INFO] ------------------------------------------------------------------------
> [INFO] Building Apache Taverna Commandline Product 3.1.0-incubating-SNAPSHOT
> [INFO] ------------------------------------------------------------------------
> [WARNING] The POM for org.springframework:org.springframework.aop:jar:3.0.0.RC1 is missing, no dependency information available
> [WARNING] The POM for org.springframework:org.springframework.core:jar:3.0.0.RC1 is missing, no dependency information available
> [WARNING] The POM for org.springframework:org.springframework.asm:jar:3.0.0.RC1 is missing, no dependency information available
> [WARNING] The POM for org.springframework:org.springframework.context:jar:3.0.0.RC1 is missing, no dependency information available
> [INFO]
> [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ taverna-command-line-product ---
> [INFO] Deleting /home/stain/src/taverna/incubator-taverna-commandline/taverna-commandline-product/target
> [INFO]
> [INFO] --- buildnumber-maven-plugin:1.0-beta-3:create (buildnumber-validate) @ taverna-command-line-product ---
> [INFO] Storing buildNumber: 20160111T1738 at timestamp: 1452533883811
> [INFO]
> [INFO] --- taverna-maven-plugin:0.2.1-incubating-SNAPSHOT:profile-generate (default-profile-generate) @ taverna-command-line-product ---
> [WARNING] Bundle : org.apache.woden:woden-core:jar:1.0M10 has unresolved package dependencies:
> [WARNING] org.apache.ws.commons.schema.resolver;version="[2.2.0,3.0.0)"
> [WARNING] org.apache.ws.commons.schema.utils;version="[2.2.0,3.0.0)"
> [WARNING] org.apache.ws.commons.schema;version="[2.2.0,3.0.0)"
> [WARNING] Bundle : org.apache.taverna.commonactivities:taverna-wsdl-generic:jar:2.1.0-incubating-SNAPSHOT has unresolved package dependencies:
> [WARNING] org.apache.ws.security.message;version="[1.6.0,2.0.0)"
> [WARNING] org.apache.ws.security;version="[1.6.0,2.0.0)"
> {code}
> Error on starting up:
> {code}
> stain@biggie:~/src/taverna/incubator-taverna-commandline/taverna-commandline-product/target/apache-taverna-commandline-3.1.0-incubating-SNAPSHOT-dev/apache-taverna-commandline-3.1.0-incubating-SNAPSHOT$ sh executeworkflow.sh asdf
> OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=400m; support was removed in 8.0
> The bundle "org.apache.taverna.commonactivities.taverna-wsdl-activity_2.1.0.incubating-SNAPSHOT [63]" could not be resolved. Reason: Missing Constraint: Import-Package: org.apache.taverna.wsdl.parser; version="[2.1.0,3.0.0)"
> {code}
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