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Posted to commits@taverna.apache.org by bu...@apache.org on 2015/02/11 10:22:59 UTC
svn commit: r939802 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/documentation/taverna-player/
content/documentation/taverna-player/index.html
Author: buildbot
Date: Wed Feb 11 09:22:59 2015
New Revision: 939802
Log:
Staging update by buildbot for taverna
Added:
websites/staging/taverna/trunk/content/documentation/taverna-player/
websites/staging/taverna/trunk/content/documentation/taverna-player/index.html
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
Propchange: websites/staging/taverna/trunk/cgi-bin/
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Propchange: websites/staging/taverna/trunk/content/
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--- cms:source-revision (original)
+++ cms:source-revision Wed Feb 11 09:22:59 2015
@@ -1 +1 @@
-1658905
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Added: websites/staging/taverna/trunk/content/documentation/taverna-player/index.html
==============================================================================
--- websites/staging/taverna/trunk/content/documentation/taverna-player/index.html (added)
+++ websites/staging/taverna/trunk/content/documentation/taverna-player/index.html Wed Feb 11 09:22:59 2015
@@ -0,0 +1,273 @@
+<!DOCTYPE html>
+<html lang="en">
+ <head>
+ <meta charset="utf-8">
+ <meta http-equiv="X-UA-Compatible" content="IE=edge">
+ <meta name="viewport" content="width=device-width, initial-scale=1">
+ <title>Apache Taverna - Taverna Player</title>
+
+ <meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
+ <meta property="og:image" content="/img/taverna-logo-145x134.png" />
+
+ <link rel="shortcut icon" href="/favicon.ico">
+ <link rel="icon" type="image/png" sizes="145x134" href="/img/taverna-logo-145x134.png">
+ <link rel="apple-touch-icon" sizes="145x134" href="/img/taverna-logo-145x134.png">
+
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap.min.css">
+ <link rel="stylesheet" href="/lib/bootstrap/css/bootstrap-theme.min.css">
+ <link rel="stylesheet" href="/css/sticky-footer-navbar.css">
+ <link rel="stylesheet" href="/css/taverna.css">
+
+
+
+
+ <!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to you under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at . http://www.apache.org/licenses/LICENSE-2.0 . Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. -->
+
+ <!-- JSON-LD markup for Google Structured Data -->
+
+ <!-- generic JSON-LD for this page -->
+ <script type="application/ld+json">
+ {
+ "@context" : "http://schema.org",
+ "@type" : ["CreativeWork"],
+ "@id": "",
+ "name" : "Taverna Player",
+ "publisher" : {
+ "@type" : "Organization",
+ "url" : "http://www.apache.org/",
+ "name" : "The Apache Software Foundation (ASF)"
+ },
+ "license": {
+ "@type": "CreativeWork",
+ "@id": "http://www.apache.org/licenses/LICENSE-2.0",
+ "url": "http://www.apache.org/licenses/LICENSE-2.0",
+ "name": "Apache License, Version 2.0"
+ }
+ }
+</script>
+
+ </head>
+
+ <body>
+
+ <!-- Static navbar -->
+ <nav class="navbar navbar-default" role="navigation">
+ <div class="container">
+ <div class="navbar-header">
+ <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false" aria-controls="navbar">
+ <span class="sr-only">Toggle navigation</span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ </button>
+ <a class="navbar-brand" href="/"><img src="/img/taverna-logo-145x134.png" alt="">Apache Taverna</a>
+
+ </div>
+ <div id="navbar" class="navbar-collapse collapse">
+ <ul class="nav navbar-nav">
+ <li class="dropdown">
+ <a href="/introduction/" data-toggle="dropdown" role="button" aria-expanded="false">Introduction<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/introduction/taverna-features">Taverna features</a></li>
+ <li><a href="/introduction/why-use-workflows">Why use workflows?</a></li>
+ <li><a href="/introduction/what-is-in-silico-experimentation">What is âin silicoâ experimentation?</a></li>
+ <li><a href="/introduction/what-is-a-workflow-management-system">What is a Workflow Management System?</a></li>
+ <li><a href="/introduction/how-can-taverna-help-me">How can Taverna help me?</a></li>
+ <li><a href="/introduction/services-in-taverna">Services in Taverna</a></li>
+ <li><a href="/introduction/related-projects">Related projects</a></li>
+ <li><a href="/introduction/chemistry-web-services">Chemistry-web-services</a></li>
+ <li><a href="/introduction/taverna-in-use">Taverna in use</a></li>
+ <li><a href="/introduction/works-with">Works with...</a></li>
+ <li><a href="/introduction/roadmap.html">Raod Map</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/documentation" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Documentation<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/documentation/glossary">Glossary1</a></li>
+ <li><a href="/documentation/quick-start-guide">Quick start guide</a></li>
+ <li><a href="/documentation/components">Components</a></li>
+ <li><a href="/documentation/interaction">Interactions</a></li>
+ <li><a href="/documentation/tutorials">Tutorials</a></li>
+ <li><a href="/documentation/videos">Videos</a></li>
+ <li><a href="/documentation/example-workflows">Example workflows</a></li>
+ <li><a href="/documentation/service-sets">Service sets</a></li>
+ <li><a href="/documentation/provenance">Provenance management</a></li>
+ <li><a href="/documentation/command-line">command-line</a></li>
+ <li><a href="/documentation/server">Taverna Server</a></li>
+ <li><a href="/documentation/taverna-player">Taverna Player</a></li>
+ <li><a href="/documentation/plugins">Plugins</a></li>
+ <li><a href="/documentation/dataviewer-tool">DataViewer Tool</a></li>
+ <li><a href="/documentation/api-consumer-tool">API Consumer Tool</a></li>
+ <li><a href="/documentation/taverna-galaxy">Taverna 2-Galaxy</a></li>
+ <li><a href="/documentation/training-and-workshops">Training and workshops</a></li>
+ </ul>
+ </li>
+ <li class="dropdown">
+ <a href="/download" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Download<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/download">Apache Taverna 3.x</a></li>
+ <li><a href="/download/pre-apache">Taverna 2.x (Pre-Apache)</a></li>
+ </ul>
+ </li>
+ <li><a href="/code">Code</a></li>
+ <li class="dropdown">
+ <a href="/community" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">Community<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="/community#mailinglists">Mailing Lists</a></li>
+ <li><a href="/community#contribute">Contribute</a></li>
+ <li><a href="/community#reportbugs">Report a Bug</a></li>
+ </ul>
+ </li>
+ </ul>
+
+ <form >
+
+
+ <!--<input type="submit" id="submit" value="Search">-->
+ </form>
+
+ <form class="navbar-form navbar-right" role="search"
+ name="search" id="search" action="http://www.google.com/search" method="get">
+ <input value="taverna.incubator.apache.org" name="sitesearch" type="hidden"/>
+ <div class="form-group input-group">
+ <input type="text" name="q" id="query" placeholder="Search" class="form-control">
+ <span class="input-group-btn">
+ <button type="submit" class="btn btn-default">Search</button>
+ </span>
+ </div>
+ </form>
+
+ <ul class="nav navbar-nav navbar-right">
+ <li class="dropdown">
+ <a href="http://www.apache.org/" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">ASF<span class="caret"></span></a>
+ <ul class="dropdown-menu" role="menu">
+ <li><a href="http://www.apache.org/">Apache Software Foundation</a></li>
+ <li><a href="http://www.apache.org/foundation/how-it-works.html">How it works</a></li>
+ <li><a href="http://www.apache.org/foundation/thanks.html">Thanks</a></li>
+ <li><a href="http://www.apache.org/foundation/sponsorship.html">Become a Sponsor</a></li>
+ <li><a href="http://incubator.apache.org/projects/taverna.html">Taverna Incubation Status</a></li>
+ </ul>
+ </li>
+ </ul>
+ </div><!--/.nav-collapse -->
+ </div><!--/.container-->
+ </nav>
+
+
+ <div id="page" class="container">
+ <h1>Taverna Player</h1>
+ <div class="alert alert-info" role="alert"><p><span class="glyphicon glyphicon-info-sign" aria-hidden="true"></span>
+
+Taverna is transitioning to the Apache Incubator.
+This webpage reflects material not yet released under Apache Incubator.
+Instead it shows <a class="alert-link" href="http://www.taverna.org.uk/">taverna2</a> material that is expected to become part of the Apache Incubator project in the future.
+</div>
+
+
+ <div id="content"><p>The Taverna Player is a Web-based interface (implemented as Ruby on Rails plugin) for executing
+ existing workflows through the <a href="/documentation/server">Taverna Server</a>.
+It can be considered analogous to playing videos on <a href="http://www.youtube.com">YouTube</a>.
+Workflows can be run with data supplied by the creator, or with new data uploaded by the user,
+ but the workflows themselves cannot be altered.</p>
+<p>Taverna Player enables the running of Taverna workflows within a Ruby-on-Rails application.
+Taverna Player has a REST API that allows inputs to the workflow to be specified,
+ a run to be started and monitored, and the resultant outputs to be retrieved.
+Any interactions the workflow includes are presented to the user in a Web browser for them to
+ complete.
+Taverna Player has been released in the RubyGems registry and is used within the
+ <a href="http://www.biovel.eu/">BioVeL Portal</a> to run a wide range of biodiversity workflows.</p>
+<p>Taverna Player is not limited to the biodiversity domain â it is generic and can be used to run
+ any Taverna workflow and can be integrated into various online environments - for example it
+ can be embedded into (static) HTML pages to run specific workflows with pre-defined data.</p>
+<p>For more information on Taverna Player or to download it, please see the following:</p>
+<ul>
+<li>Package (Ruby on Rails plugin): <a href="https://rubygems.org/gems/taverna-player">https://rubygems.org/gems/taverna-player</a></li>
+<li>Documentation: <a href="http://mygrid.github.io/taverna-player/">http://mygrid.github.io/taverna-player/</a></li>
+<li>Source: <a href="https://github.com/myGrid/taverna-player">https://github.com/myGrid/taverna-player</a></li>
+<li>Metrics: <a href="https://codeclimate.com/github/myGrid/taverna-player">https://codeclimate.com/github/myGrid/taverna-player</a></li>
+</ul>
+<h2 id="integration-of-taverna-player-into-web-apps">Integration of Taverna Player into Web apps</h2>
+<h3 id="biovel-portal">BioVeL Portal</h3>
+<p><a href="http://www.biovel.eu/">BioVeL</a> provides workflows for the processing of data in major areas of
+ biodiversity research: ecological niche modelling, ecosystem functioning, and taxonomy.
+Taverna Player has been successfully used within the <a href="https://portal.biovel.eu/">BioVeL Portal</a>
+ to submit and run a wide range of biodiversity workflows using the
+ <a href="/documentation/server">Taverna Server</a>.</p>
+<h3 id="scratchpads">Scratchpads</h3>
+<p><a href="http://scratchpads.eu/">Scratchpads</a>, developed as part of the <a href="http://vbrant.eu/">ViBRANT</a>
+ project, are online virtual research environments for biodiversity, allowing anyone to
+ share their data and create their own research networks.
+Sites are hosted at the Natural History Museum London, and offered freely to any scientist.</p>
+<p>Taverna Player has been integrated with Scratchpads in two ways.
+Firstly, workflows can be embedded in a page in the same way as a video from YouTube would be
+ embedded; the workflow itself is running on the BioVeL Portal, but all data entry and
+ user-interaction is done in the embedded widget within the Scratchpads site.
+Secondly, the Scratchpads can use the Taverna Player REST API directly;
+ this allows workflows to be run with a higher degree of control and results to be ingested
+ back into the Scratchpads for further analysis.
+In both cases, data can be automatically injected into the workflow run from the host
+ Scratchpads site.
+The actual execution of the workflow is done by the Taverna Server -
+ the Player just interacts with the Server to submit a workflow for execution,
+ monitor its progress and fetch results.</p>
+<p>Read more about
+ <a href="http://dev.mygrid.org.uk/wiki/display/TavernaStrategy/Scratchpads">Scratchpads integration</a>
+ and see relevant publications.</p>
+<h3 id="ipython-notebook">IPython Notebook</h3>
+<p><a href="http://ipython.org/">IPython Notebook</a> is a browser-based environment for interactive
+ computing.
+Users can write, edit and replay Python scripts.
+IPython Notebook has support for interactive data visualization and report presentation.
+A Notebook can be saved and shared.
+Notebooks can be replayed using the same or different data.
+The record of a Notebook ârunâ can be saved and displayed in a
+ <a href="http://nbviewer.ipython.org/">Notebook Viewer</a>.</p>
+<p>Taverna Player, through its API and and the use of HTML iframes, enables the running of
+ workflows within a portal like the BioVeL Portal to be included as part of another Web site.
+It uses the REST API of the Taverna Player to allow workflow inputs to be specified,
+ a run started and monitored, and the resultant outputs retrieved - all within the IPython
+ Notebook.</p>
+<p>Read more about
+ <a href="http://dev.mygrid.org.uk/wiki/display/TavernaStrategy/IPython+Notebook">IPython Notebook integration</a>
+ and see relevant publications.</p></div>
+
+ </div>
+
+ <footer class="footer">
+ <div class="container">
+ <p id="copyright" class="text-muted">
+ Copyright © 2014-2015 The Apache Software Foundation, Licensed under the
+ <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a>.
+ Apache and the Apache feather logo are trademarks of The Apache Software Foundation.
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+ </div>
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