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Jenkins build is still unstable: ctakes-trunk-compiletest #1097
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1097/display/redirect?page=changes>
Jenkins build is back to normal : ctakes-trunk-compiletest #1130
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Build failed in Jenkins: ctakes-trunk-compiletest #1129
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1129/display/redirect?page=changes>
Changes:
[alexz] CTAKES-479: skip testCPE when UMLS credentials not exported as env vars
------------------------------------------
[...truncated 549.99 KB...]
found: List
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion
[ERROR] required: List<Element>
found: List
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class UmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class UmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class UmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable
[ERROR] where T is a type-variable:
T extends Object declared in interface Comparable
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map
[ERROR] where K,V are type-variables:
K extends Object declared in interface Map
V extends Object declared in interface Map
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types
[ERROR] required: List<T>,Comparator<? super T>
found: List,OffsetComparator
where T is a type-variable:
T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion
[ERROR] required: List<T>
found: List
where T is a type-variable:
T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
location: class ThreadedUmlsDictionaryLookupAnnotator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types
[ERROR] required: Iterator<LookupHit>
found: Iterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion
[ERROR] required: Iterator<LookupHit>
found: Iterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion
[INFO] 28 errors
[INFO] -------------------------------------------------------------
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.412s]
[INFO] ctakes-gui-res .................................... SUCCESS [3.661s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.309s]
[INFO] Apache cTAKES common type system .................. SUCCESS [7.880s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.402s]
[INFO] Apache cTAKES core ................................ SUCCESS [22.913s]
[INFO] ctakes-gui ........................................ SUCCESS [3.852s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.399s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [4.732s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.304s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.291s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.697s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [9.836s]
[INFO] Apache cTAKES dictionary lookup ................... FAILURE [2.779s]
[INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED
[INFO] Apache cTAKES Resources lvg ....................... SKIPPED
[INFO] Apache cTAKES LVG lexical tools ................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED
[INFO] Apache cTAKES named entity contexts ............... SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED
[INFO] Apache cTAKES Constituency Parser ................. SKIPPED
[INFO] Apache cTAKES Resources coreference ............... SKIPPED
[INFO] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] Apache cTAKES Resources assertion ................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED
[INFO] Apache cTAKES Dependency Parser ................... SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO] ctakes-clinical-pipeline-res ...................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Relation Extractor .................. SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 1:40.044s
[INFO] Finished at: Thu Nov 16 22:27:59 UTC 2017
[INFO] Final Memory: 57M/781M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[22,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[21,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[87,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[161,95] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,23] [unchecked] unchecked method invocation: method addExcludeList in class LookupParseUtilitiesRefactor is applied to given types
[ERROR] required: DictionaryEngine,List<Element>
[ERROR] found: DictionaryEngine,List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,60] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[205,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in interface Comparable
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map
[ERROR] where K,V are type-variables:
[ERROR] K extends Object declared in interface Map
[ERROR] V extends Object declared in interface Map
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types
[ERROR] required: List<T>,Comparator<? super T>
[ERROR] found: List,OffsetComparator
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion
[ERROR] required: List<T>
[ERROR] found: List
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class ThreadedUmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-dictionary-lookup
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
channel stopped
Jenkins build is unstable: ctakes-trunk-compiletest #1128
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1128/display/redirect?page=changes>
Build failed in Jenkins: ctakes-trunk-compiletest #1127
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1127/display/redirect?page=changes>
Changes:
[seanfinan] Minor refactor (shorter names)
[seanfinan] Rewrite of Patient view cache
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[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES utils 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-utils ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/resources>
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils ---
[INFO] Compiling 26 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/target/classes>
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/WikiIndex.java>:[92,28] [deprecation] open(Directory) in IndexReader has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/WikiIndex.java>:[293,60] [deprecation] LUCENE_30 in Version has been deprecated
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-utils ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-utils ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-utils ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/target/surefire-reports>
-------------------------------------------------------
T E S T S
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[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES core 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-core ---
[INFO]
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[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/resources>
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core ---
[INFO] Compiling 229 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast
[ERROR] required: T
found: TOP
where T is a type-variable:
T extends Object declared in class FSListIterator
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,int)
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,Integer)
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol
[ERROR] symbol: method getPatientIds()
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol
[ERROR] symbol: method getPatientCas(String)
location: class PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol
[INFO] 9 errors
[INFO] -------------------------------------------------------------
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [5.987s]
[INFO] ctakes-gui-res .................................... SUCCESS [3.772s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.382s]
[INFO] Apache cTAKES common type system .................. SUCCESS [7.814s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.312s]
[INFO] Apache cTAKES core ................................ FAILURE [3.341s]
[INFO] ctakes-gui ........................................ SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................ SKIPPED
[INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SKIPPED
[INFO] Apache cTAKES chunker ............................. SKIPPED
[INFO] Apache cTAKES document preprocessor ............... SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup ......... SKIPPED
[INFO] Apache cTAKES dictionary lookup ................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED
[INFO] Apache cTAKES Resources lvg ....................... SKIPPED
[INFO] Apache cTAKES LVG lexical tools ................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED
[INFO] Apache cTAKES named entity contexts ............... SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED
[INFO] Apache cTAKES Constituency Parser ................. SKIPPED
[INFO] Apache cTAKES Resources coreference ............... SKIPPED
[INFO] Apache cTAKES Resources temporal .................. SKIPPED
[INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED
[INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED
[INFO] Apache cTAKES Resources assertion ................. SKIPPED
[INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED
[INFO] Apache cTAKES Dependency Parser ................... SKIPPED
[INFO] Apache cTAKES Assertion ........................... SKIPPED
[INFO] ctakes-clinical-pipeline-res ...................... SKIPPED
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED
[INFO] Apache cTAKES Relation Extractor .................. SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................ SKIPPED
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 38.299s
[INFO] Finished at: Thu Nov 16 20:28:29 UTC 2017
[INFO] Final Memory: 37M/411M
[INFO] ------------------------------------------------------------------------
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Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-core: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast
[ERROR] required: T
[ERROR] found: TOP
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in class FSListIterator
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,int)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,Integer)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol
[ERROR] symbol: method getPatientIds()
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol
[ERROR] symbol: method getPatientCas(String)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-core
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
channel stopped
Jenkins build is still unstable: ctakes-trunk-compiletest #1126
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1126/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1125
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1125/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1124
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1124/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1123
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1123/display/redirect?page=changes>
Jenkins build is unstable: ctakes-trunk-compiletest #1122
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1122/display/redirect?page=changes>
Build failed in Jenkins: ctakes-trunk-compiletest #1121
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1121/display/redirect?page=changes>
Changes:
[seanfinan] FileTreeReader : Allow specification of a single file
------------------------------------------
[...truncated 806.39 KB...]
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
09 Nov 2017 16:32:58 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
09 Nov 2017 16:32:58 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
09 Nov 2017 16:32:58 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
09 Nov 2017 16:33:10 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
09 Nov 2017 16:33:10 INFO BackwardsTimeAnnotator - Initializing ...
.
09 Nov 2017 16:33:10 INFO BackwardsTimeAnnotator - Finished.
09 Nov 2017 16:33:13 INFO EventEventRelationAnnotator - Initializing ...
.
09 Nov 2017 16:33:13 INFO EventEventRelationAnnotator - Finished.
09 Nov 2017 16:33:13 INFO SentenceDetector - Starting processing.
09 Nov 2017 16:33:13 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
09 Nov 2017 16:33:13 INFO LvgAnnotator - process(JCas)
09 Nov 2017 16:33:13 INFO ContextDependentTokenizerAnnotator - process(JCas)
09 Nov 2017 16:33:13 INFO POSTagger - process(JCas)
09 Nov 2017 16:33:13 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
09 Nov 2017 16:33:13 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.332 sec
Results :
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
location: variable notes of type PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[INFO] 2 errors
[INFO] -------------------------------------------------------------
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.492s]
[INFO] ctakes-gui-res .................................... SUCCESS [21.969s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.227s]
[INFO] Apache cTAKES common type system .................. SUCCESS [22.039s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.231s]
[INFO] Apache cTAKES core ................................ SUCCESS [21.007s]
[INFO] ctakes-gui ........................................ SUCCESS [3.890s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.198s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [7.927s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.238s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.432s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.537s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [10.248s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.194s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [7.684s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [26.527s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [4.865s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [3.580s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.880s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.362s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.130s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.259s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.374s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.234s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.149s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [2.940s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.326s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.649s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [35.241s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.042s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.222s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.213s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.722s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:46.445s]
[INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.911s]
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:35.599s
[INFO] Finished at: Thu Nov 09 16:33:21 UTC 2017
[INFO] Final Memory: 71M/467M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Build failed in Jenkins: ctakes-trunk-compiletest #1120
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1120/display/redirect?page=changes>
Changes:
[tmill] Removed unused and non-existent type.
------------------------------------------
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** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path.
08 Nov 2017 17:32:43 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal>
08 Nov 2017 17:32:43 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
08 Nov 2017 17:32:43 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
08 Nov 2017 17:32:54 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotator - Initializing ...
.
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotator - Finished.
08 Nov 2017 17:32:54 INFO SentenceDetector - Starting processing.
08 Nov 2017 17:32:54 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
08 Nov 2017 17:32:54 INFO LvgAnnotator - process(JCas)
08 Nov 2017 17:32:54 INFO ContextDependentTokenizerAnnotator - process(JCas)
08 Nov 2017 17:32:54 INFO POSTagger - process(JCas)
08 Nov 2017 17:32:54 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
08 Nov 2017 17:32:54 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time: recently
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time class: DATE
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time: until 6 months ago
08 Nov 2017 17:32:54 INFO BackwardsTimeAnnotatorTest - Time class: DATE
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.337 sec
Results :
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0
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[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
location: variable notes of type PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[INFO] 2 errors
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [5.011s]
[INFO] ctakes-gui-res .................................... SUCCESS [4.390s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.450s]
[INFO] Apache cTAKES common type system .................. SUCCESS [9.711s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.688s]
[INFO] Apache cTAKES core ................................ SUCCESS [22.435s]
[INFO] ctakes-gui ........................................ SUCCESS [3.870s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.453s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.253s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.453s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.510s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.800s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [14.408s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.031s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.791s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [31.593s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [6.611s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [16.493s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.480s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.620s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.432s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.665s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.506s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.402s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.420s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [3.069s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.533s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.880s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [37.033s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.688s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.361s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.972s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.251s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:26.465s]
[INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.566s]
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6:12.007s
[INFO] Finished at: Wed Nov 08 17:33:02 UTC 2017
[INFO] Final Memory: 76M/577M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Build failed in Jenkins: ctakes-trunk-compiletest #1119
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1119/display/redirect?page=changes>
Changes:
[tmill] New patient collector model working for coreference evaluation.
------------------------------------------
[...truncated 807.48 KB...]
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
08 Nov 2017 16:34:50 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
08 Nov 2017 16:34:50 INFO BackwardsTimeAnnotator - Initializing ...
08 Nov 2017 16:34:50 INFO BackwardsTimeAnnotator - Finished.
08 Nov 2017 16:34:53 INFO EventEventRelationAnnotator - Initializing ...
.
08 Nov 2017 16:34:53 INFO EventEventRelationAnnotator - Finished.
08 Nov 2017 16:34:53 INFO SentenceDetector - Starting processing.
08 Nov 2017 16:34:53 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
08 Nov 2017 16:34:53 INFO LvgAnnotator - process(JCas)
08 Nov 2017 16:34:53 INFO ContextDependentTokenizerAnnotator - process(JCas)
08 Nov 2017 16:34:53 INFO POSTagger - process(JCas)
08 Nov 2017 16:34:53 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
08 Nov 2017 16:34:53 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.747 sec
Results :
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0
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[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 12 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference ---
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'>
[INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'>
[INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'>
[INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'>
[INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.>
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'.
[INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'.
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference ---
[INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/ae/features/cluster/MentionClusterUMLSFeatureExtractor.java>:[14,41] error: cannot find symbol
[ERROR] symbol: class HashableMarkable
location: package org.apache.ctakes.coreference.util
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
location: variable notes of type PatientNoteStore
<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[INFO] 3 errors
[INFO] -------------------------------------------------------------
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[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ..................................... SUCCESS [4.509s]
[INFO] ctakes-gui-res .................................... SUCCESS [3.822s]
[INFO] Apache cTAKES Resources core ...................... SUCCESS [2.688s]
[INFO] Apache cTAKES common type system .................. SUCCESS [40.156s]
[INFO] Apache cTAKES utils ............................... SUCCESS [3.379s]
[INFO] Apache cTAKES core ................................ SUCCESS [23.005s]
[INFO] ctakes-gui ........................................ SUCCESS [4.524s]
[INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.242s]
[INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [5.378s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.369s]
[INFO] Apache cTAKES chunker ............................. SUCCESS [3.048s]
[INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.654s]
[INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [54.828s]
[INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.229s]
[INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [4.562s]
[INFO] Apache cTAKES Resources lvg ....................... SUCCESS [29.002s]
[INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [7.835s]
[INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [2.322s]
[INFO] Apache cTAKES named entity contexts ............... SUCCESS [4.168s]
[INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.289s]
[INFO] Apache cTAKES Constituency Parser ................. SUCCESS [2.949s]
[INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.223s]
[INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.288s]
[INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.151s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.185s]
[INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [3.291s]
[INFO] Apache cTAKES Resources assertion ................. SUCCESS [17.310s]
[INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.540s]
[INFO] Apache cTAKES Dependency Parser ................... SUCCESS [37.109s]
[INFO] Apache cTAKES Assertion ........................... SUCCESS [4.943s]
[INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.765s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [4.963s]
[INFO] Apache cTAKES Relation Extractor .................. SUCCESS [8.675s]
[INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:25.242s]
[INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.804s]
[INFO] Apache cTAKES Resources drug-ner .................. SKIPPED
[INFO] Apache cTAKES Drug NER ............................ SKIPPED
[INFO] Apache cTAKES Resources side-effect ............... SKIPPED
[INFO] Apache cTAKES Side Effects ........................ SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............ SKIPPED
[INFO] Apache cTAKES Smoking Status ...................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED
[INFO] Apache cTAKES Assertion's zoner ................... SKIPPED
[INFO] ctakes-examples-res ............................... SKIPPED
[INFO] ctakes-examples ................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED
[INFO] Apache cTAKES YTEX ................................ SKIPPED
[INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED
[INFO] Apache cTAKES YTEX Web ............................ SKIPPED
[INFO] Apache cTAKES Distribution ........................ SKIPPED
[INFO] Apache cTAKES Regression-test ..................... SKIPPED
[INFO] Apache cTAKES template filler ..................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7:16.896s
[INFO] Finished at: Wed Nov 08 16:35:01 UTC 2017
[INFO] Final Memory: 73M/631M
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[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/ae/features/cluster/MentionClusterUMLSFeatureExtractor.java>:[14,41] error: cannot find symbol
[ERROR] symbol: class HashableMarkable
[ERROR] location: package org.apache.ctakes.coreference.util
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
channel stopped
Jenkins build is still unstable: ctakes-trunk-compiletest #1118
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1118/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1117
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1117/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1116
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1116/display/redirect?page=changes>
Jenkins build is unstable: ctakes-trunk-compiletest #1115
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1115/display/redirect?page=changes>
Build failed in Jenkins: ctakes-trunk-compiletest #1114
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1114/display/redirect?page=changes>
Changes:
[seanfinan] Allow comma-separated semantic group codes in blacklist files.
[seanfinan] Change from deprecated FileLocator.locateFile(..) to getFile(..)
Remove use of deprecated getCasInitializer()
[seanfinan] CTAKES-470 : throw exception (and exit) if piper cannot be loaded. Exceptions saved to log file.
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[...truncated 324.14 KB...]
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/pipeline
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/pipeline/DictionarySubPipe.piper
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_mixed_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiBsv.xml
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiTuiBsv.xml
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiTui2Bsv.xml
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_cui_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_cui_tui_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_tui_bsv.bsv
A ctakes-ne-contexts-res
A ctakes-ne-contexts-res/src
A ctakes-ne-contexts-res/src/test
A ctakes-ne-contexts-res/src/main
A ctakes-ne-contexts-res/src/main/resources
A ctakes-ne-contexts-res/src/main/resources/org
A ctakes-ne-contexts-res/src/main/resources/org/apache
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/pipeline
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/pipeline/NeContextsSubPipe.piper
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc/NegationAnnotator.xml
A ctakes-ne-contexts-res/pom.xml
A ctakes-ne-contexts-res/LICENSE
A ctakes-dependency-parser-res
A ctakes-dependency-parser-res/src
A ctakes-dependency-parser-res/src/test
A ctakes-dependency-parser-res/src/main
A ctakes-dependency-parser-res/src/main/resources
A ctakes-dependency-parser-res/src/main/resources/org
A ctakes-dependency-parser-res/src/main/resources/org/apache
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/role
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar
A ctakes-dependency-parser-res/pom.xml
A ctakes-dependency-parser-res/LICENSE
A ctakes-chunker
A ctakes-chunker/data
A ctakes-chunker/data/chunk
A ctakes-chunker/data/chunk/genia
A ctakes-chunker/data/chunk/genia/genia.opennlp.chunks
A ctakes-chunker/data/chunk/genia/README
A ctakes-chunker/data/chunk/combinations
A ctakes-chunker/data/chunk/ptb
A ctakes-chunker/data/chunk/ptb/README
A ctakes-chunker/data/treebank
A ctakes-chunker/data/treebank/genia
A ctakes-chunker/data/treebank/genia/README
A ctakes-chunker/data/treebank/genia/names-00.txt
A ctakes-chunker/data/treebank/genia/00
A ctakes-chunker/data/treebank/genia/names-01.txt
A ctakes-chunker/data/treebank/genia/01
A ctakes-chunker/pom.xml
A ctakes-chunker/resources
A ctakes-chunker/resources/launch
AU ctakes-chunker/resources/launch/chunker.launch
AU ctakes-chunker/resources/launch/UIMA_CPE_GUI--chunker.launch
AU ctakes-chunker/resources/launch/ChunkAdjusterTests.launch
A ctakes-chunker/README
A ctakes-chunker/ExampleTrainChunker.bat
A ctakes-chunker/desc
A ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingNP.xml
A ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml
A ctakes-chunker/desc/AdjustOPhraseToIncludeFollowingO.xml
A ctakes-chunker/desc/ChunkerAggregate.xml
A ctakes-chunker/desc/ChunkerCPE.xml
A ctakes-chunker/desc/analysis_engine
A ctakes-chunker/desc/ChunkAdjuster.xml
A ctakes-chunker/desc/POSTagger.xml
A ctakes-chunker/desc/AggregateAE.xml
A ctakes-chunker/desc/collection_processing_engine
A ctakes-chunker/desc/Chunker.xml
A ctakes-chunker/desc/test
A ctakes-chunker/desc/test/SimpleSegmentAnnotator.xml
A ctakes-chunker/desc/test/AdjustNounPhraseToIncludeFollowingPPNP.xml
A ctakes-chunker/desc/test/ChunkerAggregate.xml
A ctakes-chunker/desc/test/ChunkerCPE.xml
A ctakes-chunker/desc/test/POSTagger.xml
A ctakes-chunker/desc/test/PhraseTypeChunkerAggregate.xml
A ctakes-chunker/desc/test/Chunker.xml
A ctakes-chunker/desc/test/TokenizerAnnotator.xml
A ctakes-chunker/desc/test/ChunkAdjusterAggregate.xml
A ctakes-chunker/desc/test/ChunkerCpeUsingPosTagDictionary.xml
A ctakes-chunker/desc/SimpleSegmentAnnotator.xml
A ctakes-chunker/LICENSE
A ctakes-chunker/scripts
A ctakes-chunker/scripts/java
A ctakes-chunker/scripts/java/data
A ctakes-chunker/scripts/java/data/chunk
A ctakes-chunker/scripts/java/data/chunk/genia
A ctakes-chunker/scripts/java/data/chunk/genia/Genia2PTB.java
A ctakes-chunker/scripts/java/data/chunk/Chunklink2OpenNLP.java
A ctakes-chunker/scripts/perl
A ctakes-chunker/scripts/perl/README
A ctakes-chunker/scripts/groovy
A ctakes-chunker/scripts/groovy/data
A ctakes-chunker/scripts/groovy/data/chunk
A ctakes-chunker/scripts/groovy/data/chunk/TagReport.groovy
A ctakes-chunker/src
A ctakes-chunker/src/test
A ctakes-chunker/src/test/resources
A ctakes-chunker/src/test/resources/data
A ctakes-chunker/src/test/resources/data/text-files
A ctakes-chunker/src/test/resources/data/text-files/text1.txt
A ctakes-chunker/src/test/resources/data/README
A ctakes-chunker/src/test/resources/data/output
A ctakes-chunker/src/test/resources/data/output/text1.txt.included.used.tag-dictionary.xml
A ctakes-chunker/src/test/resources/data/output/NotesIIST_RTF.DTD
A ctakes-chunker/src/test/resources/data/output/text1.txt.included.xml
A ctakes-chunker/src/test/resources/data/unit-test.opennlp.chunks
A ctakes-chunker/src/test/java
A ctakes-chunker/src/test/java/org
A ctakes-chunker/src/test/java/org/apache
A ctakes-chunker/src/test/java/org/apache/ctakes
A ctakes-chunker/src/test/java/org/apache/ctakes/chunker
A ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkerTests.java
A ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkAdjusterTests.java
A ctakes-chunker/src/main
A ctakes-chunker/src/main/java
A ctakes-chunker/src/main/java/org
A ctakes-chunker/src/main/java/org/apache
A ctakes-chunker/src/main/java/org/apache/ctakes
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/DefaultChunkCreator.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/PhraseTypeChunkCreator.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/Chunker.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster/ChunkAdjuster.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/ChunkCreator.java
A ctakes-pos-tagger-res
A ctakes-pos-tagger-res/pom.xml
A ctakes-pos-tagger-res/LICENSE
A ctakes-pos-tagger-res/src
A ctakes-pos-tagger-res/src/main
A ctakes-pos-tagger-res/src/main/resources
A ctakes-pos-tagger-res/src/main/resources/org
A ctakes-pos-tagger-res/src/main/resources/org/apache
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models
AU ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/mayo-pos.zip
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/README
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp
AU ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp/mayo-en-pos-1.3.0.jar
A ctakes-pos-tagger-res/src/test
AU KEYS
U .
At revision 1813319
Parsing POMs
Modules changed, recalculating dependency graph
ERROR: Processing failed due to a bug in the code. Please report this to the issue tracker (https://jenkins.io/redirect/report-an-issue).
hudson.remoting.RequestAbortedException: hudson.remoting.Channel$OrderlyShutdown: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
at hudson.remoting.Request.abort(Request.java:307)
at hudson.remoting.Channel.terminate(Channel.java:905)
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
at ......remote call to ubuntu-1(Native Method)
at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1554)
at hudson.remoting.Request.call(Request.java:172)
at hudson.remoting.Channel.call(Channel.java:838)
at hudson.FilePath.act(FilePath.java:987)
at hudson.FilePath.act(FilePath.java:976)
at hudson.FilePath.exists(FilePath.java:1441)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:745)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:496)
at hudson.model.Run.execute(Run.java:1737)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:419)
Caused by: hudson.remoting.Channel$OrderlyShutdown: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
Caused by: Command close created at
at hudson.remoting.Command.<init>(Command.java:60)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1132)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1130)
at hudson.remoting.Channel.close(Channel.java:1290)
at hudson.slaves.ChannelPinger$1.onDead(ChannelPinger.java:180)
at hudson.remoting.PingThread.ping(PingThread.java:130)
at hudson.remoting.PingThread.run(PingThread.java:86)
Caused by: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
... 2 more
project=hudson.maven.MavenModuleSet@1f22e949[ctakes-trunk-compiletest]
project.getModules()=[hudson.maven.MavenModule@5102d47c[ctakes-trunk-compiletest/org.apache.ctakes:ctakes][ctakes-trunk-compiletest/org.apache.ctakes:ctakes][relativePath:], hudson.maven.MavenModule@12f62c94[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion][relativePath:ctakes-assertion], hudson.maven.MavenModule@3f57f1a0[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-res][relativePath:ctakes-assertion-res], hudson.maven.MavenModule@7094ade0[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-zoner][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-zoner][relativePath:ctakes-assertion-zoner], hudson.maven.MavenModule@5768cbe7[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-zoner-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-assertion-zoner-res][relativePath:ctakes-assertion-zoner-res], hudson.maven.MavenModule@844b590[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-chunker][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-chunker][relativePath:ctakes-chunker], hudson.maven.MavenModule@7b5af825[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-chunker-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-chunker-res][relativePath:ctakes-chunker-res], hudson.maven.MavenModule@2c31245a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-clinical-pipeline][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-clinical-pipeline][relativePath:ctakes-clinical-pipeline], hudson.maven.MavenModule@60e30d51[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-clinical-pipeline-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-clinical-pipeline-res][relativePath:ctakes-clinical-pipeline-res], hudson.maven.MavenModule@39c443a6[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-constituency-parser][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-constituency-parser][relativePath:ctakes-constituency-parser], hudson.maven.MavenModule@3f47934d[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-constituency-parser-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-constituency-parser-res][relativePath:ctakes-constituency-parser-res], hudson.maven.MavenModule@9293931[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-context-tokenizer][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-context-tokenizer][relativePath:ctakes-context-tokenizer], hudson.maven.MavenModule@54e37dd8[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-core][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-core][relativePath:ctakes-core], hudson.maven.MavenModule@41e97a61[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-core-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-core-res][relativePath:ctakes-core-res], hudson.maven.MavenModule@2b63a6ef[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-coreference][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-coreference][relativePath:ctakes-coreference], hudson.maven.MavenModule@29b3d733[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-coreference-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-coreference-res][relativePath:ctakes-coreference-res], hudson.maven.MavenModule@5a44851a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dependency-parser][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dependency-parser][relativePath:ctakes-dependency-parser], hudson.maven.MavenModule@3d9a9e5a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dependency-parser-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dependency-parser-res][relativePath:ctakes-dependency-parser-res], hudson.maven.MavenModule@7380ffd2[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-gui][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-gui][relativePath:ctakes-dictionary-gui], hudson.maven.MavenModule@37881a1c[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup][relativePath:ctakes-dictionary-lookup], hudson.maven.MavenModule@4b2c7ec8[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-fast][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-fast][relativePath:ctakes-dictionary-lookup-fast], hudson.maven.MavenModule@87fcf0b[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-fast-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-fast-res][relativePath:ctakes-dictionary-lookup-fast-res], hudson.maven.MavenModule@44ec51b[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup-res][relativePath:ctakes-dictionary-lookup-res], hudson.maven.MavenModule@2ff75d2a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup2][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup2][relativePath:ctakes-dictionary-lookup2], hudson.maven.MavenModule@7f2bcc17[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup2-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-dictionary-lookup2-res][relativePath:ctakes-dictionary-lookup2-res], hudson.maven.MavenModule@33655734[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-distribution][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-distribution][relativePath:ctakes-distribution], hudson.maven.MavenModule@dc51c7e[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-drug-ner][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-drug-ner][relativePath:ctakes-drug-ner], hudson.maven.MavenModule@63c4d63c[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-drug-ner-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-drug-ner-res][relativePath:ctakes-drug-ner-res], hudson.maven.MavenModule@339526b[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-examples][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-examples][relativePath:ctakes-examples], hudson.maven.MavenModule@4fb7162a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-examples-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-examples-res][relativePath:ctakes-examples-res], hudson.maven.MavenModule@7afa80a9[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-gui][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-gui][relativePath:ctakes-gui], hudson.maven.MavenModule@19c2aa9e[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-gui-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-gui-res][relativePath:ctakes-gui-res], hudson.maven.MavenModule@4bf7b43a[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-lvg][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-lvg][relativePath:ctakes-lvg], hudson.maven.MavenModule@57450d8d[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-lvg-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-lvg-res][relativePath:ctakes-lvg-res], hudson.maven.MavenModule@5d87e279[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ne-contexts][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ne-contexts][relativePath:ctakes-ne-contexts], hudson.maven.MavenModule@7c8a2c23[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ne-contexts-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ne-contexts-res][relativePath:ctakes-ne-contexts-res], hudson.maven.MavenModule@b811cbe[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-pos-tagger][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-pos-tagger][relativePath:ctakes-pos-tagger], hudson.maven.MavenModule@68b772b5[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-pos-tagger-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-pos-tagger-res][relativePath:ctakes-pos-tagger-res], hudson.maven.MavenModule@1a38a130[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-preprocessor][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-preprocessor][relativePath:ctakes-preprocessor], hudson.maven.MavenModule@204b5c90[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-regression-test][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-regression-test][relativePath:ctakes-regression-test], hudson.maven.MavenModule@183c18b9[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor][relativePath:ctakes-relation-extractor], hudson.maven.MavenModule@17daf7cf[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-relation-extractor-res][relativePath:ctakes-relation-extractor-res], hudson.maven.MavenModule@4aff4058[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect][relativePath:ctakes-side-effect], hudson.maven.MavenModule@53200abc[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-side-effect-res][relativePath:ctakes-side-effect-res], hudson.maven.MavenModule@1e0da563[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status][relativePath:ctakes-smoking-status], hudson.maven.MavenModule@4ee6e554[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-smoking-status-res][relativePath:ctakes-smoking-status-res], hudson.maven.MavenModule@4ac3715e[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-template-filler][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-template-filler][relativePath:ctakes-template-filler], hudson.maven.MavenModule@6fb5c471[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal][relativePath:ctakes-temporal], hudson.maven.MavenModule@443e5cf5[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-temporal-res][relativePath:ctakes-temporal-res], hudson.maven.MavenModule@6cc9237d[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-type-system][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-type-system][relativePath:ctakes-type-system], hudson.maven.MavenModule@325042d8[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-utils][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-utils][relativePath:ctakes-utils], hudson.maven.MavenModule@27968bcf[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex][relativePath:ctakes-ytex], hudson.maven.MavenModule@17bfa21b[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-res][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-res][relativePath:ctakes-ytex-res], hudson.maven.MavenModule@4c745771[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-uima][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-uima][relativePath:ctakes-ytex-uima], hudson.maven.MavenModule@2211a7fa[ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-web][ctakes-trunk-compiletest/org.apache.ctakes:ctakes-ytex-web][relativePath:ctakes-ytex-web]]
project.getRootModule()=hudson.maven.MavenModule@5102d47c[ctakes-trunk-compiletest/org.apache.ctakes:ctakes][ctakes-trunk-compiletest/org.apache.ctakes:ctakes][relativePath:]
FATAL: hudson.remoting.Channel$OrderlyShutdown: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
Caused: Command close created at
at hudson.remoting.Command.<init>(Command.java:60)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1132)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1130)
at hudson.remoting.Channel.close(Channel.java:1290)
at hudson.slaves.ChannelPinger$1.onDead(ChannelPinger.java:180)
at hudson.remoting.PingThread.ping(PingThread.java:130)
at hudson.remoting.PingThread.run(PingThread.java:86)
Caused: hudson.remoting.Channel$OrderlyShutdown: hudson.remoting.ProxyException: java.util.concurrent.TimeoutException: Ping started at 1508950397103 hasn't completed by 1508950637134
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
Caused: hudson.remoting.RequestAbortedException
at hudson.remoting.Request.abort(Request.java:307)
at hudson.remoting.Channel.terminate(Channel.java:905)
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
at ......remote call to ubuntu-1(Native Method)
at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1554)
at hudson.remoting.Request.call(Request.java:172)
at hudson.remoting.Channel.call(Channel.java:838)
at hudson.FilePath.act(FilePath.java:987)
at hudson.FilePath.act(FilePath.java:976)
at hudson.FilePath.exists(FilePath.java:1441)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:745)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:496)
at hudson.model.Run.execute(Run.java:1737)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:419)
ERROR: ubuntu-1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-1 is offline; cannot locate Maven 3.0.5
ERROR: ubuntu-1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-1 is offline; cannot locate Maven 3.0.5
Jenkins build is still unstable: ctakes-trunk-compiletest #1113
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1113/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1112
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1112/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1111
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1111/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1110
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1110/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1109
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1109/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1108
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1108/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1107
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1107/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1106
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1106/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1105
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1105/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1104
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1104/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1103
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1103/display/redirect?page=changes>
Jenkins build is unstable: ctakes-trunk-compiletest #1102
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1102/display/redirect?page=changes>
Build failed in Jenkins: ctakes-trunk-compiletest #1101
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1101/display/redirect?page=changes>
Changes:
[seanfinan] DocumentIDAnnotationUtil can now fetch idPrefix, useful for patient id
NumberedSuffixComparator to compare text and number strings logically - "abc1" < "abc10"
Add patient package for multi-document patient handling
AbstractPatientConsumer processes when patients are complete
PatientNoteCollector AE sends patient document cas to a cache
PatientNoteStore caches documents into views in a common patient cas
PatientViewUtil utilities for fetching cas views and view names. Could be named "CasViewUtil" and moved
MentionClusterCoreferenceAnnotator added notYetProcess() for Tim to review
PatientMentionClusterCoreferencer extends AbstractPatientConsumer and delegates to MentionClusterCoreferenceAnnotator
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[...truncated 320.51 KB...]
A ctakes-relation-extractor/src/test
A ctakes-relation-extractor/src/test/java
A ctakes-relation-extractor/src/test/java/org
A ctakes-relation-extractor/src/test/java/org/apache
A ctakes-relation-extractor/src/test/java/org/apache/ctakes
A ctakes-relation-extractor/src/test/java/org/apache/ctakes/relationextractor
A ctakes-relation-extractor/src/test/java/org/apache/ctakes/relationextractor/ae
AU ctakes-relation-extractor/src/test/java/org/apache/ctakes/relationextractor/ae/RelationExtractorAnnotatorsTest.java
AU ctakes-relation-extractor/src/test/java/org/apache/ctakes/relationextractor/ae/NamedEntityFeaturesExtractorTest.java
A ctakes-relation-extractor/docs
A ctakes-relation-extractor/docs/knowtator.txt
A ctakes-relation-extractor/docs/readme.txt
A ctakes-relation-extractor/docs/todo.txt
A ctakes-relation-extractor/pom.xml
A ctakes-relation-extractor/resources
A ctakes-relation-extractor/resources/launch
AU ctakes-relation-extractor/resources/launch/UIMA_CVD--relation-extractor.launch
AU ctakes-relation-extractor/resources/launch/UIMA_CPE--relation-extractor.launch
A ctakes-relation-extractor/desc
A ctakes-relation-extractor/desc/analysis_engine
A ctakes-relation-extractor/desc/analysis_engine/LocationOfRelationExtractorAnnotator.xml
A ctakes-relation-extractor/desc/analysis_engine/DegreeOfRelationExtractorAnnotator.xml
A ctakes-relation-extractor/desc/analysis_engine/ModifierExtractorAnnotator.xml
AU ctakes-relation-extractor/desc/analysis_engine/RelationExtractorAggregate.xml
AU ctakes-relation-extractor/desc/analysis_engine/RelationExtractorPreprocessor.xml
A ctakes-relation-extractor/desc/analysis_engine/RemoteDictionary.xml
A ctakes-relation-extractor/metadata
A ctakes-relation-extractor/metadata/install.xml
A ctakes-preprocessor
A ctakes-preprocessor/LICENSE
A ctakes-preprocessor/src
A ctakes-preprocessor/src/test
A ctakes-preprocessor/src/test/data
A ctakes-preprocessor/src/test/data/output
A ctakes-preprocessor/src/test/data/output/testpatient_cn_1.xml.included.xml
A ctakes-preprocessor/src/test/resources
A ctakes-preprocessor/src/test/resources/testpatient_cn_1.xml
A ctakes-preprocessor/src/test/resources/NotesIIST_RTF.DTD
A ctakes-preprocessor/src/test/java
A ctakes-preprocessor/src/test/java/org
A ctakes-preprocessor/src/test/java/org/apache
A ctakes-preprocessor/src/test/java/org/apache/ctakes
A ctakes-preprocessor/src/test/java/org/apache/ctakes/preprocessor
A ctakes-preprocessor/src/test/java/org/apache/ctakes/preprocessor/ClinicalNotePreProcessorTest.java
A ctakes-preprocessor/src/main
A ctakes-preprocessor/src/main/java
A ctakes-preprocessor/src/main/java/edu
A ctakes-preprocessor/src/main/java/edu/mayo
A ctakes-preprocessor/src/main/java/edu/mayo/bmi
A ctakes-preprocessor/src/main/java/edu/mayo/bmi/uima
A ctakes-preprocessor/src/main/java/org
A ctakes-preprocessor/src/main/java/org/apache
A ctakes-preprocessor/src/main/java/org/apache/ctakes
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/Annotation.java
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/IntegerRange.java
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ClinicalNotePreProcessor.java
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DocumentMetaData.java
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/test
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/test/TestDriver.java
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/DTDloader.java
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/SegmentMetaData.java
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/Utility.java
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ae
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/ae/CdaCasInitializer.java
A ctakes-preprocessor/src/main/java/org/apache/ctakes/preprocessor/PreProcessor.java
A ctakes-preprocessor/src/main/resources
A ctakes-preprocessor/src/main/resources/org
A ctakes-preprocessor/src/main/resources/org/apache
A ctakes-preprocessor/src/main/resources/org/apache/ctakes
A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor
A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/cda
A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/cda/NotesIIST_RTF.DTD
A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer
A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated.txt
A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated_sample.txt
A ctakes-preprocessor/src/main/resources/org/apache/ctakes/preprocessor/tokenizer/hyphenated.README.mayo
A ctakes-preprocessor/pom.xml
A ctakes-preprocessor/resources
A ctakes-preprocessor/resources/launch
AU ctakes-preprocessor/resources/launch/document_preprocessor.launch
AU ctakes-preprocessor/resources/launch/UIMA_CPE_GUI--document_preprocessor.launch
A ctakes-preprocessor/README
A ctakes-preprocessor/desc
A ctakes-preprocessor/desc/CdaCasInitializer.xml
A ctakes-preprocessor/desc/CPE_CdaCasInitializer.xml
A ctakes-preprocessor/desc/AggregateAE.xml
A ctakes-smoking-status
A ctakes-smoking-status/desc
A ctakes-smoking-status/desc/cas_consumer
AU ctakes-smoking-status/desc/cas_consumer/RecordResolutionCasConsumer.xml
A ctakes-smoking-status/desc/analysis_engine
AU ctakes-smoking-status/desc/analysis_engine/ResolutionAnnotator.xml
AU ctakes-smoking-status/desc/analysis_engine/PcsClassifierAnnotator_libsvm.xml
AU ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE.xml
AU ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE.xml
AU ctakes-smoking-status/desc/analysis_engine/ClassifiableEntriesAnnotator.xml
AU ctakes-smoking-status/desc/analysis_engine/KuRuleBasedClassifierAnnotator.xml
AU ctakes-smoking-status/desc/analysis_engine/NonsmokerDictionaryLookupAnnotator.xml
AU ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step2_libsvm.xml
AU ctakes-smoking-status/desc/analysis_engine/SmokingStatusDictionaryLookupAnnotator.xml
AU ctakes-smoking-status/desc/analysis_engine/ArtificialSentenceAnnotator.xml
AU ctakes-smoking-status/desc/analysis_engine/ProductionPostSentenceAggregate_step1.xml
AU ctakes-smoking-status/desc/analysis_engine/Sentence.xml
AU ctakes-smoking-status/desc/analysis_engine/ExternalBaseAggregateTAE_CDA.xml
AU ctakes-smoking-status/desc/analysis_engine/SimulatedProdSmokingTAE_CDA.xml
AU ctakes-smoking-status/desc/analysis_engine/SentenceAdjuster.xml
A ctakes-smoking-status/desc/collection_processing_engine
AU ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml
AU ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml
A ctakes-smoking-status/metadata
AU ctakes-smoking-status/metadata/PEAR.properties
AU ctakes-smoking-status/metadata/setenv.txt
AU ctakes-smoking-status/metadata/install.xml
AU ctakes-smoking-status/LICENSE
A ctakes-smoking-status/src
A ctakes-smoking-status/src/main
A ctakes-smoking-status/src/main/java
A ctakes-smoking-status/src/main/java/org
A ctakes-smoking-status/src/main/java/org/apache
A ctakes-smoking-status/src/main/java/org/apache/ctakes
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae/NonSmokerNamedEntityLookupConsumerImpl.java
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae/SmokerNamedEntityLookupConsumerImpl.java
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/lookup/ae/UnknownSmokerNamedEntityLookupConsumerImpl.java
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/patientLevel
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/patientLevel/PatientLevelSmokingStatus.java
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/util
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/util/ClassifiableEntry.java
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/util/TruthValue.java
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/i2b2
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context/NamedEntityContextAnalyzer.java
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context/negation
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/context/negation/NegationContextAnalyzer.java
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/machine
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/machine/NegationFSM.java
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/ClassifiableEntries.java
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/PcsClassifierAnnotator_libsvm.java
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/KuRuleBasedClassifierAnnotator.java
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/SentenceAdjuster.java
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/ae/ResolutionAnnotator.java
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/cc
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/cc/RecordResolutionCasConsumer.java
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/Const.java
A ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil
AU ctakes-smoking-status/src/main/java/org/apache/ctakes/smokingstatus/MLutil/GenerateTrainingData.java
A ctakes-smoking-status/src/main/resources
A ctakes-smoking-status/src/main/resources/org
A ctakes-smoking-status/src/main/resources/org/apache
A ctakes-smoking-status/src/main/resources/org/apache/ctakes
A ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus
A ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types
A ctakes-smoking-status/src/main/resources/org/apache/ctakes/smokingstatus/types/TypeSystem.xml
A ctakes-smoking-status/data
A ctakes-smoking-status/data/test
A ctakes-smoking-status/data/test/output
AU ctakes-smoking-status/data/test/output/record_resolution.txt
AU ctakes-smoking-status/data/test/doc1_07543210_sample_past_smoker.txt
AU ctakes-smoking-status/data/test/doc2_07543210_sample_past_smoker.txt
A ctakes-smoking-status/data/test/cda
A ctakes-smoking-status/data/test/cda/testpatient_cn_1.xml
AU ctakes-smoking-status/data/test/doc1_07543210_sample_unknown.txt
AU ctakes-smoking-status/data/test/doc1_07543210_sample_current.txt
AU ctakes-smoking-status/data/test/doc2_07543210_sample_current.txt
A ctakes-smoking-status/launch
AU ctakes-smoking-status/launch/UIMA_CPE_GUI--Smokin_Status.launch
AU ctakes-smoking-status/launch/UIMA CPE GUI (SmokingStatus).launch
AU ctakes-smoking-status/launch/UIMA CAS Visual Debugger (Smoking Status).launch
A ctakes-smoking-status/pom.xml
AU ctakes-smoking-status/README
A ctakes-assertion-zoner-res
A ctakes-assertion-zoner-res/src
A ctakes-assertion-zoner-res/src/test
A ctakes-assertion-zoner-res/src/main
A ctakes-assertion-zoner-res/src/main/resources
A ctakes-assertion-zoner-res/src/main/resources/META-INF
A ctakes-assertion-zoner-res/src/main/resources/META-INF/org.apache.uima.fit
A ctakes-assertion-zoner-res/src/main/resources/META-INF/org.apache.uima.fit/types.txt
A ctakes-assertion-zoner-res/src/main/resources/org
A ctakes-assertion-zoner-res/src/main/resources/org/mitre
A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts
A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima
A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.xml.bak
A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/mayo_sections.xml
A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.04162012.xml
A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.xml.bak2
A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.06162011.xml
A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.xml
A ctakes-assertion-zoner-res/src/main/resources/org/mitre/medfacts/uima/section_regex.out.xml
A ctakes-assertion-zoner-res/pom.xml
A ctakes-assertion-zoner-res/LICENSE
U .
At revision 1809920
Parsing POMs
ERROR: Failed to parse POMs
java.io.IOException: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/> at hudson.remoting.Channel@76e412b9:H27: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[ERROR] Child module <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-scaleout> of <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/pom.xml> does not exist @
at hudson.FilePath.act(FilePath.java:993)
at hudson.FilePath.act(FilePath.java:975)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:985)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:690)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:490)
at hudson.model.Run.execute(Run.java:1735)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:542)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:405)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[ERROR] Child module <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-scaleout> of <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/pom.xml> does not exist @
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1389)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1123)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2739)
at hudson.remoting.UserRequest.perform(UserRequest.java:153)
at hudson.remoting.UserRequest.perform(UserRequest.java:50)
at hudson.remoting.Request$2.run(Request.java:336)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
at ......remote call to H27(Native Method)
at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1545)
at hudson.remoting.UserResponse.retrieve(UserRequest.java:253)
at hudson.remoting.Channel.call(Channel.java:830)
at hudson.FilePath.act(FilePath.java:986)
... 8 more
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[ERROR] Child module <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-scaleout> of <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/pom.xml> does not exist @
at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:364)
at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1326)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1123)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2739)
at hudson.remoting.UserRequest.perform(UserRequest.java:153)
at hudson.remoting.UserRequest.perform(UserRequest.java:50)
at hudson.remoting.Request$2.run(Request.java:336)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Build failed in Jenkins: ctakes-trunk-compiletest #1100
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1100/display/redirect?page=changes>
Changes:
[seanfinan] Check for piper files without .piper specified in the name
[seanfinan] ctakes - 455. Hide failing passwords, log improved "check settings" instead.
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[...truncated 321.25 KB...]
A ctakes-context-tokenizer/src/test/java/org
A ctakes-context-tokenizer/src/test/java/org/apache
A ctakes-context-tokenizer/src/test/java/org/apache/ctakes
A ctakes-context-tokenizer/src/test/java/org/apache/ctakes/contexttokenizer
A ctakes-context-tokenizer/src/test/java/org/apache/ctakes/contexttokenizer/ae
AU ctakes-context-tokenizer/src/test/java/org/apache/ctakes/contexttokenizer/ae/TestContextDependentTokenizerAnnotator.java
A ctakes-context-tokenizer/data
A ctakes-context-tokenizer/data/test
A ctakes-context-tokenizer/data/test/output
A ctakes-context-tokenizer/pom.xml
A ctakes-context-tokenizer/resources
A ctakes-context-tokenizer/resources/launch
A ctakes-context-tokenizer/README
A ctakes-context-tokenizer/desc
A ctakes-context-tokenizer/desc/analysis_engine
A ctakes-context-tokenizer/desc/analysis_engine/AggregateAE.xml
A ctakes-context-tokenizer/desc/analysis_engine/ContextDependentTokenizerAnnotator.xml
A ctakes-context-tokenizer/desc/analysis_engine/TestTAE.xml
A ctakes-context-tokenizer/LICENSE
A ctakes-dictionary-lookup-fast-res
AU ctakes-dictionary-lookup-fast-res/LICENSE
A ctakes-dictionary-lookup-fast-res/src
A ctakes-dictionary-lookup-fast-res/src/main
A ctakes-dictionary-lookup-fast-res/src/main/resources
A ctakes-dictionary-lookup-fast-res/src/main/resources/org
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/pipeline
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/pipeline/DictionarySubPipe.piper
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_cui_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_cui_tui_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_tui_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/custom_mixed_bsv.bsv
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiBsv.xml
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiTuiBsv.xml
A ctakes-dictionary-lookup-fast-res/src/main/resources/org/apache/ctakes/dictionary/lookup/fast/example/bsv/CustomCuiTui2Bsv.xml
AU ctakes-dictionary-lookup-fast-res/pom.xml
A ctakes-ne-contexts-res
A ctakes-ne-contexts-res/LICENSE
A ctakes-ne-contexts-res/src
A ctakes-ne-contexts-res/src/test
A ctakes-ne-contexts-res/src/main
A ctakes-ne-contexts-res/src/main/resources
A ctakes-ne-contexts-res/src/main/resources/org
A ctakes-ne-contexts-res/src/main/resources/org/apache
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/pipeline
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/pipeline/NeContextsSubPipe.piper
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc
A ctakes-ne-contexts-res/src/main/resources/org/apache/ctakes/necontexts/desc/NegationAnnotator.xml
A ctakes-ne-contexts-res/pom.xml
A ctakes-dependency-parser-res
A ctakes-dependency-parser-res/pom.xml
A ctakes-dependency-parser-res/LICENSE
A ctakes-dependency-parser-res/src
A ctakes-dependency-parser-res/src/test
A ctakes-dependency-parser-res/src/main
A ctakes-dependency-parser-res/src/main/resources
A ctakes-dependency-parser-res/src/main/resources/org
A ctakes-dependency-parser-res/src/main/resources/org/apache
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/README
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/lemmatizer/dictionary-1.3.1.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/pred/mayo-en-pred-1.3.0.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/README
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/dependency/mayo-en-dep-1.3.0.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/mayo-en-srl-1.3.0.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/srl/README
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/clearparser_models.jar
A ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/role
AU ctakes-dependency-parser-res/src/main/resources/org/apache/ctakes/dependency/parser/models/role/mayo-en-role-1.3.0.jar
A ctakes-chunker
A ctakes-chunker/LICENSE
A ctakes-chunker/scripts
A ctakes-chunker/scripts/java
A ctakes-chunker/scripts/java/data
A ctakes-chunker/scripts/java/data/chunk
A ctakes-chunker/scripts/java/data/chunk/genia
A ctakes-chunker/scripts/java/data/chunk/genia/Genia2PTB.java
A ctakes-chunker/scripts/java/data/chunk/Chunklink2OpenNLP.java
A ctakes-chunker/scripts/perl
A ctakes-chunker/scripts/perl/README
A ctakes-chunker/scripts/groovy
A ctakes-chunker/scripts/groovy/data
A ctakes-chunker/scripts/groovy/data/chunk
A ctakes-chunker/scripts/groovy/data/chunk/TagReport.groovy
A ctakes-chunker/src
A ctakes-chunker/src/test
A ctakes-chunker/src/test/resources
A ctakes-chunker/src/test/resources/data
A ctakes-chunker/src/test/resources/data/text-files
A ctakes-chunker/src/test/resources/data/text-files/text1.txt
A ctakes-chunker/src/test/resources/data/README
A ctakes-chunker/src/test/resources/data/output
A ctakes-chunker/src/test/resources/data/output/text1.txt.included.used.tag-dictionary.xml
A ctakes-chunker/src/test/resources/data/output/NotesIIST_RTF.DTD
A ctakes-chunker/src/test/resources/data/output/text1.txt.included.xml
A ctakes-chunker/src/test/resources/data/unit-test.opennlp.chunks
A ctakes-chunker/src/test/java
A ctakes-chunker/src/test/java/org
A ctakes-chunker/src/test/java/org/apache
A ctakes-chunker/src/test/java/org/apache/ctakes
A ctakes-chunker/src/test/java/org/apache/ctakes/chunker
A ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkerTests.java
A ctakes-chunker/src/test/java/org/apache/ctakes/chunker/ChunkAdjusterTests.java
A ctakes-chunker/src/main
A ctakes-chunker/src/main/java
A ctakes-chunker/src/main/java/org
A ctakes-chunker/src/main/java/org/apache
A ctakes-chunker/src/main/java/org/apache/ctakes
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/adjuster/ChunkAdjuster.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/ChunkCreator.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/DefaultChunkCreator.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/PhraseTypeChunkCreator.java
A ctakes-chunker/src/main/java/org/apache/ctakes/chunker/ae/Chunker.java
A ctakes-chunker/data
A ctakes-chunker/data/chunk
A ctakes-chunker/data/chunk/genia
A ctakes-chunker/data/chunk/genia/genia.opennlp.chunks
A ctakes-chunker/data/chunk/genia/README
A ctakes-chunker/data/chunk/combinations
A ctakes-chunker/data/chunk/ptb
A ctakes-chunker/data/chunk/ptb/README
A ctakes-chunker/data/treebank
A ctakes-chunker/data/treebank/genia
A ctakes-chunker/data/treebank/genia/00
A ctakes-chunker/data/treebank/genia/names-01.txt
A ctakes-chunker/data/treebank/genia/01
A ctakes-chunker/data/treebank/genia/README
A ctakes-chunker/data/treebank/genia/names-00.txt
A ctakes-chunker/pom.xml
A ctakes-chunker/resources
A ctakes-chunker/resources/launch
AU ctakes-chunker/resources/launch/ChunkAdjusterTests.launch
AU ctakes-chunker/resources/launch/chunker.launch
AU ctakes-chunker/resources/launch/UIMA_CPE_GUI--chunker.launch
A ctakes-chunker/README
A ctakes-chunker/ExampleTrainChunker.bat
A ctakes-chunker/desc
A ctakes-chunker/desc/ChunkAdjuster.xml
A ctakes-chunker/desc/POSTagger.xml
A ctakes-chunker/desc/AggregateAE.xml
A ctakes-chunker/desc/collection_processing_engine
A ctakes-chunker/desc/Chunker.xml
A ctakes-chunker/desc/test
A ctakes-chunker/desc/test/ChunkerAggregate.xml
A ctakes-chunker/desc/test/ChunkerCPE.xml
A ctakes-chunker/desc/test/POSTagger.xml
A ctakes-chunker/desc/test/PhraseTypeChunkerAggregate.xml
A ctakes-chunker/desc/test/Chunker.xml
A ctakes-chunker/desc/test/TokenizerAnnotator.xml
A ctakes-chunker/desc/test/ChunkAdjusterAggregate.xml
A ctakes-chunker/desc/test/ChunkerCpeUsingPosTagDictionary.xml
A ctakes-chunker/desc/test/SimpleSegmentAnnotator.xml
A ctakes-chunker/desc/test/AdjustNounPhraseToIncludeFollowingPPNP.xml
A ctakes-chunker/desc/SimpleSegmentAnnotator.xml
A ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingNP.xml
A ctakes-chunker/desc/AdjustNounPhraseToIncludeFollowingPPNP.xml
A ctakes-chunker/desc/AdjustOPhraseToIncludeFollowingO.xml
A ctakes-chunker/desc/ChunkerAggregate.xml
A ctakes-chunker/desc/ChunkerCPE.xml
A ctakes-chunker/desc/analysis_engine
A ctakes-pos-tagger-res
A ctakes-pos-tagger-res/pom.xml
A ctakes-pos-tagger-res/LICENSE
A ctakes-pos-tagger-res/src
A ctakes-pos-tagger-res/src/test
A ctakes-pos-tagger-res/src/main
A ctakes-pos-tagger-res/src/main/resources
A ctakes-pos-tagger-res/src/main/resources/org
A ctakes-pos-tagger-res/src/main/resources/org/apache
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp
AU ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/clearnlp/mayo-en-pos-1.3.0.jar
AU ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/mayo-pos.zip
A ctakes-pos-tagger-res/src/main/resources/org/apache/ctakes/postagger/models/README
AU KEYS
U .
At revision 1809788
Parsing POMs
ERROR: Failed to parse POMs
java.io.IOException: remote file operation failed: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/> at hudson.remoting.Channel@6d2aa5d3:H27: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[ERROR] Child module <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-scaleout> of <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/pom.xml> does not exist @
at hudson.FilePath.act(FilePath.java:993)
at hudson.FilePath.act(FilePath.java:975)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.parsePoms(MavenModuleSetBuild.java:985)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:690)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:490)
at hudson.model.Run.execute(Run.java:1735)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:542)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:405)
Caused by: hudson.remoting.ProxyException: hudson.maven.MavenModuleSetBuild$MavenExecutionException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[ERROR] Child module <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-scaleout> of <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/pom.xml> does not exist @
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1389)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1123)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2739)
at hudson.remoting.UserRequest.perform(UserRequest.java:153)
at hudson.remoting.UserRequest.perform(UserRequest.java:50)
at hudson.remoting.Request$2.run(Request.java:336)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
at ......remote call to H27(Native Method)
at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1545)
at hudson.remoting.UserResponse.retrieve(UserRequest.java:253)
at hudson.remoting.Channel.call(Channel.java:830)
at hudson.FilePath.act(FilePath.java:986)
... 8 more
Caused by: hudson.remoting.ProxyException: org.apache.maven.project.ProjectBuildingException: Some problems were encountered while processing the POMs:
[ERROR] Child module <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-scaleout> of <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/pom.xml> does not exist @
at org.apache.maven.project.DefaultProjectBuilder.build(DefaultProjectBuilder.java:364)
at hudson.maven.MavenEmbedder.buildProjects(MavenEmbedder.java:361)
at hudson.maven.MavenEmbedder.readProjects(MavenEmbedder.java:331)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1326)
at hudson.maven.MavenModuleSetBuild$PomParser.invoke(MavenModuleSetBuild.java:1123)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2739)
at hudson.remoting.UserRequest.perform(UserRequest.java:153)
at hudson.remoting.UserRequest.perform(UserRequest.java:50)
at hudson.remoting.Request$2.run(Request.java:336)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:68)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748)
Jenkins build is still unstable: ctakes-trunk-compiletest #1099
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1099/display/redirect?page=changes>
Jenkins build is still unstable: ctakes-trunk-compiletest #1098
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/1098/display/redirect?page=changes>