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Posted to commits@uima.apache.org by jo...@apache.org on 2009/05/21 14:38:59 UTC

svn commit: r777093 [1/2] - in /incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor: ./ core/ editor/ editor/util/ ui/ ui/wizards/

Author: joern
Date: Thu May 21 12:38:53 2009
New Revision: 777093

URL: http://svn.apache.org/viewvc?rev=777093&view=rev
Log:
UIMA-546: Changed formation to be compliant to UIMA code conventions

Modified:
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/CasEditorPlugin.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/core/TaeError.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationDocument.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditor.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorActionContributor.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorView.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProvider.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProviderFactory.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasEditorError.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DefaultCasDocumentProvider.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentFormat.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentUimaImpl.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/EditorAnnotationStatus.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateAction.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateDialog.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/IAnnotationEditorModifyListener.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/QuickTypeSelectionDialog.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/util/IDGenerator.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/ui/NlpPerspectiveFactory.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/ui/wizards/ImportDocumentWizard.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/ui/wizards/NewNlpProjectWizardPage.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/ui/wizards/WizardNewFileCreation.java
    incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/ui/wizards/WizardNewFolderCreation.java

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/CasEditorPlugin.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/CasEditorPlugin.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/CasEditorPlugin.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/CasEditorPlugin.java Thu May 21 12:38:53 2009
@@ -49,7 +49,7 @@
   private ResourceBundle mResourceBundle;
 
   private static NlpModel sNLPModel;
-  
+
   /**
    * The constructor.
    */
@@ -134,7 +134,7 @@
   public static void log(Throwable t) {
     getDefault().getLog().log(new Status(IStatus.ERROR, ID, IStatus.OK, t.getMessage(), t));
   }
-  
+
   public static void logError(String message) {
     getDefault().getLog().log(new Status(IStatus.ERROR, ID, message));
   }
@@ -166,7 +166,7 @@
 
     return sNLPModel;
   }
-  
+
   /**
    * Destroy the nlp model, only for testing.
    */
@@ -175,4 +175,4 @@
 
     sNLPModel = null;
   }
-}
\ No newline at end of file
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/core/TaeError.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/core/TaeError.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/core/TaeError.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/core/TaeError.java Thu May 21 12:38:53 2009
@@ -23,9 +23,7 @@
  * A general {@link RuntimeException} which is thrown if something unexpected happens.
  */
 public class TaeError extends RuntimeException {
-  /**
-   *
-   */
+
   private static final long serialVersionUID = 1L;
 
   /**

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationDocument.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationDocument.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationDocument.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationDocument.java Thu May 21 12:38:53 2009
@@ -37,16 +37,16 @@
  * Note: Before an instance can be used the  document must be set.
  */
 public class AnnotationDocument extends Document implements ICasDocument {
-	
+
   private ICasDocument mDocument;
-  
+
   private int lineLengthHint = 80;
 
   public AnnotationDocument() {
   }
 
   public void setLineLengthHint(int lineLengthHint) {
-	  this.lineLengthHint = lineLengthHint;
+    this.lineLengthHint = lineLengthHint;
   }
 
   /**
@@ -301,4 +301,4 @@
   public Type getType(String type) {
     return mDocument.getType(type);
   }
-}
\ No newline at end of file
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditor.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditor.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditor.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditor.java Thu May 21 12:38:53 2009
@@ -324,7 +324,7 @@
 
             // Workaround: It is possible check that is text under the cursor ?
             try {
-            offset = textWidget.getOffsetAtLocation(new Point(e.x, e.y));
+              offset = textWidget.getOffsetAtLocation(new Point(e.x, e.y));
             }
             catch (IllegalArgumentException e2) {
               return;
@@ -382,7 +382,7 @@
 
         // ask document provider for this
         // getAnnotation must be added to cas document provider
-        
+
         AnnotationStyle style = getDocumentProvider().getAnnotationStyle(getEditorInput(),
         		eclipseAnnotation.getAnnotationFS().getType());
 
@@ -431,11 +431,11 @@
   private class CloseEditorListener implements IResourceChangeListener {
 
     private AnnotationEditor editor;
-    
+
     public CloseEditorListener(AnnotationEditor editor) {
       this.editor = editor;
     }
-    
+
     public void resourceChanged(IResourceChangeEvent event) {
       IResourceDelta delta = event.getDelta();
       try {
@@ -468,7 +468,7 @@
       }
     }
   }
-  
+
   private Type mAnnotationMode;
 
   /**
@@ -498,22 +498,22 @@
   private DocumentListener mAnnotationSynchronizer;
 
   private CloseEditorListener closeEditorListener;
-  
+
   /**
    * Creates an new AnnotationEditor object.
    */
   public AnnotationEditor() {
 	CasDocumentProvider provider =
 			CasDocumentProviderFactory.instance().getDocumentProvider();
-	
+
     setDocumentProvider(provider);
   }
-  
+
   @Override
   public CasDocumentProvider getDocumentProvider() {
 	  return (CasDocumentProvider) super.getDocumentProvider();
   }
-  
+
   /**
    * Retrieves annotation editor adapters.
    *
@@ -622,36 +622,35 @@
     getSite().setSelectionProvider(mFeatureStructureSelectionProvider);
 
     if (getDocument() != null) {
-	    mShowAnnotationsMenu = new ShowAnnotationsMenu(
-	    		getDocumentProvider().getEditorAnnotationStatus(getEditorInput()),
-	    		getDocument().getCAS().getTypeSystem());
-	    mShowAnnotationsMenu.addListener(new IShowAnnotationsListener() {
-
-			public void selectionChanged(Collection<Type> selection) {
-		          // TODO: only synchronize annotation which
-		          // must be removed/added
-		          syncAnnotations();
-		          
-		          // TODO:
-		          // get and set editor annotation status must
-		          // be added to document provider
-		          
-		          EditorAnnotationStatus status =
-		        	  	getDocumentProvider().getEditorAnnotationStatus(getEditorInput());
-
-		          getDocumentProvider().setEditorAnnotationStatus(getEditorInput(),
-		                  new EditorAnnotationStatus(status.getMode(), selection));
-		          
-		          if (mEditorListener != null)
-		        	  	mEditorListener.showAnnotationsChanged(selection);
-			}
-	    });
+      mShowAnnotationsMenu = new ShowAnnotationsMenu(
+              getDocumentProvider().getEditorAnnotationStatus(getEditorInput()),
+              getDocument().getCAS().getTypeSystem());
+      mShowAnnotationsMenu.addListener(new IShowAnnotationsListener() {
+
+        public void selectionChanged(Collection<Type> selection) {
+          // TODO: only synchronize annotation which
+          // must be removed/added
+          syncAnnotations();
+
+          // TODO:
+          // get and set editor annotation status must
+          // be added to document provider
 
-	    EditorAnnotationStatus status =
-	    	getDocumentProvider().getEditorAnnotationStatus(getEditorInput());
+          EditorAnnotationStatus status =
+                  getDocumentProvider().getEditorAnnotationStatus(getEditorInput());
 
+          getDocumentProvider().setEditorAnnotationStatus(getEditorInput(),
+                  new EditorAnnotationStatus(status.getMode(), selection));
 
-	    setAnnotationMode(getDocument().getType(status.getMode()));
+          if (mEditorListener != null)
+            mEditorListener.showAnnotationsChanged(selection);
+        }
+      });
+
+      EditorAnnotationStatus status = getDocumentProvider()
+              .getEditorAnnotationStatus(getEditorInput());
+
+      setAnnotationMode(getDocument().getType(status.getMode()));
     }
   }
 
@@ -677,11 +676,11 @@
     mDocument = (AnnotationDocument) getDocumentProvider().getDocument(input);
 
     if (mDocument != null) {
-      
+
       closeEditorListener = new CloseEditorListener(this);
       ResourcesPlugin.getWorkspace().addResourceChangeListener(
               closeEditorListener, IResourceChangeEvent.POST_CHANGE);
-      
+
     	// mAnnotationModel = getDocumentProvider().getAnnotationModel(input);
 
       mAnnotationSynchronizer = new DocumentListener();
@@ -699,18 +698,17 @@
     // mode menu
     MenuManager modeMenuManager = new MenuManager("Mode");
     menu.appendToGroup(IWorkbenchActionConstants.MB_ADDITIONS, modeMenuManager);
-    
+
     ModeMenu modeMenu = new ModeMenu(typeSytem);
     modeMenu.addListener(new IModeMenuListener(){
 
 		public void modeChanged(Type newMode) {
-	        IAction actionToExecute = new ChangeModeAction(newMode,
-	        		newMode.getShortName(),
-	                AnnotationEditor.this);
+	    IAction actionToExecute = new ChangeModeAction(newMode, newMode.getShortName(),
+	            AnnotationEditor.this);
 
-	        actionToExecute.run();
+      actionToExecute.run();
 		}});
-    
+
     modeMenuManager.add(modeMenu);
 
     // annotation menu
@@ -759,7 +757,7 @@
     // TODO: check if this type is a subtype of Annotation
 
     mAnnotationMode = type;
-    
+
     highlight(0, 0);
 
     setProjectEditorStatus();
@@ -769,14 +767,14 @@
     syncAnnotations();
 
     fireAnnotationTypeChanged(getAnnotationMode());
-    
+
     mShowAnnotationsMenu.setEditorAnnotationMode(type);
   }
 
   public Collection<Type> getShownAnnotationTypes() {
 	  return mShowAnnotationsMenu.getSelectedTypes();
   }
-  
+
   /**
    * @param type
    */
@@ -787,12 +785,12 @@
   }
 
   private void showAnnotationType(Type type) {
-		AnnotationStyle style = getDocumentProvider().getAnnotationStyle(getEditorInput(), type);
-		mPainter.addDrawingStrategy(type.getName(),
-				DrawingStyle.valueOf(style.getStyle().name()).getStrategy());
-		mPainter.addAnnotationType(type.getName(), type.getName());
+    AnnotationStyle style = getDocumentProvider().getAnnotationStyle(getEditorInput(), type);
+    mPainter.addDrawingStrategy(type.getName(),
+            DrawingStyle.valueOf(style.getStyle().name()).getStrategy());
+    mPainter.addAnnotationType(type.getName(), type.getName());
     java.awt.Color color = style.getColor();
-		mPainter.setAnnotationTypeColor(type.getName(), new Color(null, color.getRed(),
+    mPainter.setAnnotationTypeColor(type.getName(), new Color(null, color.getRed(),
             color.getGreen(), color.getBlue()));
   }
 
@@ -813,7 +811,7 @@
 
     mPainter.paint(IPainter.CONFIGURATION);
   }
-  
+
   /**
    * @param listener
    */
@@ -875,7 +873,7 @@
       Span selecectedSpan = new Span(selectedText.x, selectedText.y);
 
       Collection<AnnotationFS> selectedAnnotations = getDocument().getAnnotation(
-    		  getAnnotationMode(), selecectedSpan);
+              getAnnotationMode(), selecectedSpan);
 
       for (AnnotationFS annotation : selectedAnnotations) {
         selection.add(annotation);
@@ -945,13 +943,13 @@
     // TODO: do not replace if equal ... check this
     EditorAnnotationStatus status = new EditorAnnotationStatus(getAnnotationMode().getName(),
             mShowAnnotationsMenu.getSelectedTypes());
-    
+
     getDocumentProvider().setEditorAnnotationStatus(getEditorInput(), status);
   }
 
   /**
    * Creates custom annotation actions:
-   * 
+   *
    * Annotate Action
    * Smart Annotate Action
    * Delete Annotations Action
@@ -959,7 +957,7 @@
    */
   @Override
   protected void createActions() {
-    
+
     super.createActions();
 
     mFeatureStructureSelectionProvider = new FeatureStructureSelectionProvider();
@@ -1000,7 +998,7 @@
 
     annotationContextEditAction.setActionDefinitionId(ITextEditorActionDefinitionIds.QUICK_ASSIST);
     setAction(ITextEditorActionDefinitionIds.QUICK_ASSIST, annotationContextEditAction);
-    
+
     // create find annotate action
     FindAnnotateAction findAnnotateAction = new FindAnnotateAction(this, getSourceViewer().getFindReplaceTarget());
     findAnnotateAction.setActionDefinitionId(IWorkbenchActionDefinitionIds.FIND_REPLACE);
@@ -1013,18 +1011,18 @@
     getSite().getWorkbenchWindow().getSelectionService().removeSelectionListener(this);
 
     getSite().getPage().removeSelectionListener(this);
-    
+
     ICasDocument document = getDocument();
 
     if (document != null) {
       document.removeChangeListener(mAnnotationSynchronizer);
     }
-    
+
     if (closeEditorListener != null) {
       ResourcesPlugin.getWorkspace()
               .removeResourceChangeListener(closeEditorListener);
     }
-    
+
     super.dispose();
   }
 
@@ -1035,7 +1033,7 @@
   void setAnnotationSelection(AnnotationFS annotation) {
     mFeatureStructureSelectionProvider.setSelection(getDocument(), annotation);
   }
-  
+
   /**
    * Creates a list of all {@link AnnotationEditor} which are currently opened.
    */
@@ -1049,9 +1047,9 @@
         IEditorReference[] references = page.getEditorReferences();
 
         for (IEditorReference reference : references) {
-          
+
           IEditorPart part = reference.getEditor(false);
-          
+
           if (part instanceof AnnotationEditor) {
             AnnotationEditor editor = (AnnotationEditor) part;
             dirtyParts.add(editor);

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorActionContributor.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorActionContributor.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorActionContributor.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorActionContributor.java Thu May 21 12:38:53 2009
@@ -57,7 +57,7 @@
       Type annotationType = mActiveEditorPart.getAnnotationMode();
 
       if (annotationType != null) {
-    	  mStatusLineModeItem.setText(annotationType.getShortName());
+        mStatusLineModeItem.setText(annotationType.getShortName());
       }
     }
   }
@@ -77,4 +77,4 @@
 
     statusLineManager.add(mStatusLineModeItem);
   }
-}
\ No newline at end of file
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorView.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorView.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorView.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/AnnotationEditorView.java Thu May 21 12:38:53 2009
@@ -49,19 +49,19 @@
   }
 
   protected abstract PageRec doCreatePage(AnnotationEditor editor);
-  
+
   @Override
-	protected final PageRec doCreatePage(IWorkbenchPart part) {
-	  
-	    if (part instanceof AnnotationEditor) {
-	        AnnotationEditor editor = (AnnotationEditor) part;
-	        
-	        return doCreatePage(editor);
-	    }
-	    
-		return null;
-	}
-  
+  protected final PageRec doCreatePage(IWorkbenchPart part) {
+
+    if (part instanceof AnnotationEditor) {
+      AnnotationEditor editor = (AnnotationEditor) part;
+
+      return doCreatePage(editor);
+    }
+
+    return null;
+  }
+
   @Override
   protected IWorkbenchPart getBootstrapPart() {
     return getSite().getPage().getActiveEditor();
@@ -89,4 +89,4 @@
   public void partBroughtToTop(IWorkbenchPart part) {
     partActivated(part);
   }
-}
\ No newline at end of file
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProvider.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProvider.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProvider.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProvider.java Thu May 21 12:38:53 2009
@@ -40,110 +40,108 @@
 import org.eclipse.ui.texteditor.AbstractDocumentProvider;
 
 /**
- * Provides the {@link org.apache.uima.caseditor.editor.ICasDocument} for
- * the {@link AnnotationEditor}.
+ * Provides the {@link org.apache.uima.caseditor.editor.ICasDocument} for the
+ * {@link AnnotationEditor}.
  */
 public abstract class CasDocumentProvider extends AbstractDocumentProvider {
 
-	/**
-	 * The method {@link #createDocument(Object)} put error status
-	 * objects for the given element in this map, if something with document creation
-	 * goes wrong.
-	 *
-	 * The method {@link #getStatus(Object)} can then retrieve and return the status.
-	 */
-	protected Map<Object, IStatus> elementErrorStatus =
-			new HashMap<Object, IStatus>();
-
-	@Override
-	protected IAnnotationModel createAnnotationModel(Object element) throws CoreException {
-		return new IAnnotationModel() {
-
-			private org.apache.uima.caseditor.editor.ICasDocument mDocument;
-
-			public void addAnnotation(Annotation annotation, Position position) {
-			}
-
-			public void addAnnotationModelListener(IAnnotationModelListener listener) {
-			}
-
-			public void connect(IDocument document) {
-				mDocument = (org.apache.uima.caseditor.editor.ICasDocument) document;
-			}
-
-			public void disconnect(IDocument document) {
-				mDocument = null;
-			}
-
-			public Iterator<EclipseAnnotationPeer> getAnnotationIterator() {
-				return new Iterator<EclipseAnnotationPeer>() {
-					private Iterator<FeatureStructure> mAnnotations =
-						mDocument.getCAS().getAnnotationIndex().iterator();
-
-					public boolean hasNext() {
-						return mAnnotations.hasNext();
-					}
-
-					public EclipseAnnotationPeer next() {
-						AnnotationFS annotation = (AnnotationFS) mAnnotations.next();
-
-						EclipseAnnotationPeer peer = new EclipseAnnotationPeer(annotation.getType().getName(), false, "");
-						peer.setAnnotation(annotation);
-						return peer;
-					}
-
-					public void remove() {
-					}};
-			}
-
-			public Position getPosition(Annotation annotation) {
-				EclipseAnnotationPeer peer = (EclipseAnnotationPeer) annotation;
-				AnnotationFS annotationFS = peer.getAnnotationFS();
-				return new Position(annotationFS.getBegin(),
-						annotationFS.getEnd() - annotationFS.getBegin());
-			}
-
-			public void removeAnnotation(Annotation annotation) {
-			}
-
-			public void removeAnnotationModelListener(IAnnotationModelListener listener) {
-			}
-		};
-	}
-
-	/**
-	 * Creates the a new {@link AnnotationDocument} from the given {@link FileEditorInput}
-	 * element. For all other elements null is returned.
-	 */
-	@Override
-	protected abstract IDocument createDocument(Object element) throws CoreException;
-
-	@Override
-	protected abstract void doSaveDocument(IProgressMonitor monitor, 
-			Object element, IDocument document, boolean overwrite) throws CoreException;
-
-
-	@Override
-	protected IRunnableContext getOperationRunner(IProgressMonitor monitor) {
-		return null;
-	}
-
-	@Override
-	public IStatus getStatus(Object element) {
-	    IStatus status = elementErrorStatus.get(element);
-
-	    if (status == null) {
-	      status = super.getStatus(element);
-	    }
-
-	    return status;
-	}
-
-	protected abstract AnnotationStyle getAnnotationStyle(Object element, Type type);
-	
-	protected abstract EditorAnnotationStatus getEditorAnnotationStatus(
-			Object element);
-
-	protected abstract void setEditorAnnotationStatus(Object element,
-			EditorAnnotationStatus editorAnnotationStatus);
-}
\ No newline at end of file
+  /**
+   * The method {@link #createDocument(Object)} put error status objects for the given element in
+   * this map, if something with document creation goes wrong.
+   * 
+   * The method {@link #getStatus(Object)} can then retrieve and return the status.
+   */
+  protected Map<Object, IStatus> elementErrorStatus = new HashMap<Object, IStatus>();
+
+  @Override
+  protected IAnnotationModel createAnnotationModel(Object element) throws CoreException {
+    return new IAnnotationModel() {
+
+      private org.apache.uima.caseditor.editor.ICasDocument mDocument;
+
+      public void addAnnotation(Annotation annotation, Position position) {
+      }
+
+      public void addAnnotationModelListener(IAnnotationModelListener listener) {
+      }
+
+      public void connect(IDocument document) {
+        mDocument = (org.apache.uima.caseditor.editor.ICasDocument) document;
+      }
+
+      public void disconnect(IDocument document) {
+        mDocument = null;
+      }
+
+      public Iterator<EclipseAnnotationPeer> getAnnotationIterator() {
+        return new Iterator<EclipseAnnotationPeer>() {
+          private Iterator<FeatureStructure> mAnnotations =
+                  mDocument.getCAS().getAnnotationIndex().iterator();
+
+          public boolean hasNext() {
+            return mAnnotations.hasNext();
+          }
+
+          public EclipseAnnotationPeer next() {
+            AnnotationFS annotation = (AnnotationFS) mAnnotations.next();
+
+            EclipseAnnotationPeer peer =
+                    new EclipseAnnotationPeer(annotation.getType().getName(), false, "");
+            peer.setAnnotation(annotation);
+            return peer;
+          }
+
+          public void remove() {
+          }
+        };
+      }
+
+      public Position getPosition(Annotation annotation) {
+        EclipseAnnotationPeer peer = (EclipseAnnotationPeer) annotation;
+        AnnotationFS annotationFS = peer.getAnnotationFS();
+        return new Position(annotationFS.getBegin(), annotationFS.getEnd()
+                - annotationFS.getBegin());
+      }
+
+      public void removeAnnotation(Annotation annotation) {
+      }
+
+      public void removeAnnotationModelListener(IAnnotationModelListener listener) {
+      }
+    };
+  }
+
+  /**
+   * Creates the a new {@link AnnotationDocument} from the given {@link FileEditorInput} element.
+   * For all other elements null is returned.
+   */
+  @Override
+  protected abstract IDocument createDocument(Object element) throws CoreException;
+
+  @Override
+  protected abstract void doSaveDocument(IProgressMonitor monitor, Object element,
+          IDocument document, boolean overwrite) throws CoreException;
+
+  @Override
+  protected IRunnableContext getOperationRunner(IProgressMonitor monitor) {
+    return null;
+  }
+
+  @Override
+  public IStatus getStatus(Object element) {
+    IStatus status = elementErrorStatus.get(element);
+
+    if (status == null) {
+      status = super.getStatus(element);
+    }
+
+    return status;
+  }
+
+  protected abstract AnnotationStyle getAnnotationStyle(Object element, Type type);
+
+  protected abstract EditorAnnotationStatus getEditorAnnotationStatus(Object element);
+
+  protected abstract void setEditorAnnotationStatus(Object element,
+          EditorAnnotationStatus editorAnnotationStatus);
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProviderFactory.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProviderFactory.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProviderFactory.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasDocumentProviderFactory.java Thu May 21 12:38:53 2009
@@ -24,49 +24,49 @@
 import org.eclipse.core.runtime.Platform;
 
 class CasDocumentProviderFactory {
-	
-	private static final String CAS_EDITOR_EXTENSION = "org.apache.uima.caseditor.editor";
-	
-	private static CasDocumentProviderFactory instance;
-	
-	private CasDocumentProvider documentProvider;
-	
-	CasDocumentProviderFactory() {
-		
-		IConfigurationElement[] config = Platform.getExtensionRegistry()
-				.getConfigurationElementsFor(CAS_EDITOR_EXTENSION);
-		
-		for (IConfigurationElement e : config) {
-			
-			if ("provider".equals(e.getName())) {
-			
-				Object o;
-				try {
-					o = e.createExecutableExtension("class");
-				} catch (CoreException e1) {
-					// TODO: Log error, extension point was not specified correctly !!!
-					e1.printStackTrace();
-					o = null;
-				}
-				
-				if (o instanceof CasDocumentProvider) {
-					documentProvider = (CasDocumentProvider) o;
-				}
-			}
-		}
-		
-	}
-	
-	CasDocumentProvider getDocumentProvider() {
-		return documentProvider;
-	}
-	
-	static CasDocumentProviderFactory instance() {
-		
-		if (instance == null) {
-			instance = new CasDocumentProviderFactory();
-		}
-		
-		return instance;
-	}
-}
\ No newline at end of file
+
+  private static final String CAS_EDITOR_EXTENSION = "org.apache.uima.caseditor.editor";
+
+  private static CasDocumentProviderFactory instance;
+
+  private CasDocumentProvider documentProvider;
+
+  CasDocumentProviderFactory() {
+
+    IConfigurationElement[] config =
+            Platform.getExtensionRegistry().getConfigurationElementsFor(CAS_EDITOR_EXTENSION);
+
+    for (IConfigurationElement e : config) {
+
+      if ("provider".equals(e.getName())) {
+
+        Object o;
+        try {
+          o = e.createExecutableExtension("class");
+        } catch (CoreException e1) {
+          // TODO: Log error, extension point was not specified correctly !!!
+          e1.printStackTrace();
+          o = null;
+        }
+
+        if (o instanceof CasDocumentProvider) {
+          documentProvider = (CasDocumentProvider) o;
+        }
+      }
+    }
+
+  }
+
+  CasDocumentProvider getDocumentProvider() {
+    return documentProvider;
+  }
+
+  static CasDocumentProviderFactory instance() {
+
+    if (instance == null) {
+      instance = new CasDocumentProviderFactory();
+    }
+
+    return instance;
+  }
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasEditorError.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasEditorError.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasEditorError.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/CasEditorError.java Thu May 21 12:38:53 2009
@@ -23,28 +23,28 @@
  * A general {@link RuntimeException} which is thrown if something unexpected happens.
  */
 public class CasEditorError extends RuntimeException {
-	
-	  /**
-	   *
-	   */
-	  private static final long serialVersionUID = 1L;
 
-	  /**
-	   * Initializes the current instance.
-	   *
-	   * @param message
-	   */
-	  public CasEditorError(String message) {
-	    super(message);
-	  }
+  /**
+   *
+   */
+  private static final long serialVersionUID = 1L;
 
-	  /**
-	   * Initializes the current instance.
-	   *
-	   * @param message
-	   * @param cause
-	   */
-	  public CasEditorError(String message, Throwable cause) {
-	    super(message, cause);
-	  }
-	}
+  /**
+   * Initializes the current instance.
+   *
+   * @param message
+   */
+  public CasEditorError(String message) {
+    super(message);
+  }
+
+  /**
+   * Initializes the current instance.
+   *
+   * @param message
+   * @param cause
+   */
+  public CasEditorError(String message, Throwable cause) {
+    super(message, cause);
+  }
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DefaultCasDocumentProvider.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DefaultCasDocumentProvider.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DefaultCasDocumentProvider.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DefaultCasDocumentProvider.java Thu May 21 12:38:53 2009
@@ -12,122 +12,116 @@
 import org.eclipse.jface.text.IDocument;
 import org.eclipse.ui.part.FileEditorInput;
 
-public class DefaultCasDocumentProvider 
-		extends org.apache.uima.caseditor.editor.CasDocumentProvider {
+public class DefaultCasDocumentProvider extends
+        org.apache.uima.caseditor.editor.CasDocumentProvider {
 
-	@Override
-	protected IDocument createDocument(Object element) throws CoreException {
-		if (element instanceof FileEditorInput) {
-			FileEditorInput fileInput = (FileEditorInput) element;
-
-			IFile file = fileInput.getFile();
-
-			INlpElement nlpElement = org.apache.uima.caseditor.CasEditorPlugin.getNlpModel().findMember(file);
-
-			if (nlpElement instanceof DocumentElement) {
-
-				try {
-					org.apache.uima.caseditor.editor.ICasDocument workingCopy =
-						((DocumentElement) nlpElement).getDocument(true);
-
-					AnnotationDocument document = new AnnotationDocument();
-
-					document.setDocument(workingCopy);
-					
-					elementErrorStatus.remove(element);
-					
-					return document;
-				}
-				catch (CoreException e) {
-					elementErrorStatus.put(element, new Status(IStatus.ERROR,
-							CasEditorPlugin.ID, IStatus.OK,
-							"There is a problem with the document: " + e.getMessage(), e));
-				}
-			}
-			else {
-				IStatus status;
-
-				if (nlpElement == null) {
-					status = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK,
-							"Document not in a corpus folder!", null);
-				}
-				else {
-					status = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK,
-							"Not a cas document!", null);
-				}
-
-				elementErrorStatus.put(element, status);
-			}
-		}
-
-		return null;
-	}
-
-	@Override
-	protected void doSaveDocument(IProgressMonitor monitor, Object element,
-			IDocument document, boolean overwrite) throws CoreException {
-		
-		fireElementStateChanging(element);
-
-		
-		if (element instanceof FileEditorInput) {
-			FileEditorInput fileInput = (FileEditorInput) element;
-
-			IFile file = fileInput.getFile();
-
-			INlpElement nlpElement = org.apache.uima.caseditor.CasEditorPlugin.getNlpModel().findMember(file);
-		
-			if (nlpElement instanceof DocumentElement) {
-				DocumentElement documentElement = (DocumentElement) nlpElement;
-				
-				try {
-					documentElement.saveDocument();
-				}
-				catch (CoreException e) {
-					fireElementStateChangeFailed(element);
-					throw e;
-				}
-			}
-			else {
-				fireElementStateChangeFailed(element);
-				return;
-			}
-		}
-		
-		fireElementDirtyStateChanged(element, false);
-	}
-	
-	private INlpElement getNlpElement(Object element) {
-		if (element instanceof FileEditorInput) {
-			FileEditorInput fileInput = (FileEditorInput) element;
-			
-			IFile file = fileInput.getFile();
-
-			return org.apache.uima.caseditor.CasEditorPlugin.getNlpModel().findMember(file);
-		}
-		
-		return null;
-	}
-	
-	@Override
+  @Override
+  protected IDocument createDocument(Object element) throws CoreException {
+    if (element instanceof FileEditorInput) {
+      FileEditorInput fileInput = (FileEditorInput) element;
+
+      IFile file = fileInput.getFile();
+
+      INlpElement nlpElement = CasEditorPlugin.getNlpModel().findMember(file);
+
+      if (nlpElement instanceof DocumentElement) {
+
+        try {
+          org.apache.uima.caseditor.editor.ICasDocument workingCopy =
+                  ((DocumentElement) nlpElement).getDocument(true);
+
+          AnnotationDocument document = new AnnotationDocument();
+
+          document.setDocument(workingCopy);
+
+          elementErrorStatus.remove(element);
+
+          return document;
+        } catch (CoreException e) {
+          elementErrorStatus.put(element, new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK,
+                  "There is a problem with the document: " + e.getMessage(), e));
+        }
+      } else {
+        IStatus status;
+
+        if (nlpElement == null) {
+          status = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK,
+                  "Document not in a corpus folder!", null);
+        } else {
+          status = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, "Not a cas document!",
+                  null);
+        }
+
+        elementErrorStatus.put(element, status);
+      }
+    }
+
+    return null;
+  }
+
+  @Override
+  protected void doSaveDocument(IProgressMonitor monitor, Object element, IDocument document,
+          boolean overwrite) throws CoreException {
+
+    fireElementStateChanging(element);
+
+    if (element instanceof FileEditorInput) {
+      FileEditorInput fileInput = (FileEditorInput) element;
+
+      IFile file = fileInput.getFile();
+
+      INlpElement nlpElement =
+              org.apache.uima.caseditor.CasEditorPlugin.getNlpModel().findMember(file);
+
+      if (nlpElement instanceof DocumentElement) {
+        DocumentElement documentElement = (DocumentElement) nlpElement;
+
+        try {
+          documentElement.saveDocument();
+        } catch (CoreException e) {
+          fireElementStateChangeFailed(element);
+          throw e;
+        }
+      } else {
+        fireElementStateChangeFailed(element);
+        return;
+      }
+    }
+
+    fireElementDirtyStateChanged(element, false);
+  }
+
+  private INlpElement getNlpElement(Object element) {
+    if (element instanceof FileEditorInput) {
+      FileEditorInput fileInput = (FileEditorInput) element;
+
+      IFile file = fileInput.getFile();
+
+      return CasEditorPlugin.getNlpModel().findMember(file);
+    }
+
+    return null;
+  }
+
+  @Override
   protected AnnotationStyle getAnnotationStyle(Object element, Type type) {
-		INlpElement nlpElement = getNlpElement(element);
-		
-		return nlpElement.getNlpProject().getDotCorpus().getAnnotation(type);
-	}
-	 
-	@Override
+    INlpElement nlpElement = getNlpElement(element);
+
+    return nlpElement.getNlpProject().getDotCorpus().getAnnotation(type);
+  }
+
+  @Override
   protected EditorAnnotationStatus getEditorAnnotationStatus(Object element) {
-		INlpElement nlpElement = getNlpElement(element);
-		
-		return nlpElement.getNlpProject().getEditorAnnotationStatus();
-	}
+    INlpElement nlpElement = getNlpElement(element);
+
+    return nlpElement.getNlpProject().getEditorAnnotationStatus();
+  }
 
-	@Override
+  @Override
   protected void setEditorAnnotationStatus(Object element,
-			EditorAnnotationStatus editorAnnotationStatus) {
-		INlpElement nlpElement = getNlpElement(element);
-		
-		nlpElement.getNlpProject().setEditorAnnotationStatus(editorAnnotationStatus);
-	}
+          EditorAnnotationStatus editorAnnotationStatus) {
+    INlpElement nlpElement = getNlpElement(element);
+
+    nlpElement.getNlpProject().setEditorAnnotationStatus(editorAnnotationStatus);
+  }
 }

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentFormat.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentFormat.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentFormat.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentFormat.java Thu May 21 12:38:53 2009
@@ -23,6 +23,6 @@
  * Specifies the format of the uima document.
  */
 public enum DocumentFormat {
-    XCAS,
-    XMI
-}
\ No newline at end of file
+  XCAS,
+  XMI
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentUimaImpl.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentUimaImpl.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentUimaImpl.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/DocumentUimaImpl.java Thu May 21 12:38:53 2009
@@ -58,320 +58,299 @@
  */
 public class DocumentUimaImpl extends AbstractDocument {
 
-	// TODO: Remove field not needed anymore
-	private final TypeSystem mTypeSystem;
+  // TODO: Remove field not needed anymore
+  private final TypeSystem mTypeSystem;
 
-	private final CAS mCAS;
+  private final CAS mCAS;
 
-	private final DocumentFormat format;
+  private final DocumentFormat format;
 
-	/**
-	 * Initializes a new instance.
-	 *
-	 * @param project
-	 */
-	public DocumentUimaImpl(CAS cas, InputStream in, 
-			DocumentFormat format) throws CoreException {
-		
-		mCAS = cas;
-		
-		mTypeSystem = cas.getTypeSystem();
-		
-		this.format = format;
-
-		setContent(in);
-	}
-
-	/**
-	 * Retrieves the {@link CAS}.
-	 */
-	public CAS getCAS() {
-		return mCAS;
-	}
-
-	/**
-	 * Adds the given annotation to the {@link CAS}.
-	 */
-	public void addFeatureStructure(FeatureStructure annotation) {
-		mCAS.getIndexRepository().addFS(annotation);
-
-		fireAddedAnnotation(annotation);
-	}
-
-	/**
-	 *
-	 */
-	public void addFeatureStructures(Collection<FeatureStructure> annotations) {
-		for (FeatureStructure annotation : annotations) {
-			addFeatureStructure(annotation);
-		}
-	}
-
-	/**
-	 * Remove all annotations. TODO: implement it
-	 */
-	public void removeAnnotation() {
-		// must be implemented
-	}
-
-	/**
-	 * Internally removes an annotation from the {@link CAS}.
-	 *
-	 * @param featureStructure
-	 */
-	private void removeAnnotationInternal(FeatureStructure featureStructure) {
-		getCAS().getIndexRepository().removeFS(featureStructure);
-	}
-
-	/**
-	 * Removes the annotations from the {@link CAS}.
-	 */
-	public void removeFeatureStructure(FeatureStructure annotation) {
-		removeAnnotationInternal(annotation);
-
-		fireRemovedAnnotation(annotation);
-	}
-
-	/**
-	 * Removes the given annotations from the {@link CAS}.
-	 */
-	public void removeFeatureStructures(
-			Collection<FeatureStructure> annotationsToRemove) {
-
-		for (FeatureStructure annotationToRemove : annotationsToRemove) {
-			removeAnnotationInternal(annotationToRemove);
-		}
-
-		if (annotationsToRemove.size() > 0) {
-			fireRemovedAnnotations(annotationsToRemove);
-		}
-	}
-
-	/**
-	 * Notifies clients about the changed annotation.
-	 */
-	public void update(FeatureStructure annotation) {
-		fireUpdatedFeatureStructure(annotation);
-	}
-
-	/**
-	 * Notifies clients about the changed annotation.
-	 */
-	public void updateFeatureStructure(Collection<FeatureStructure> annotations) {
-		fireUpdatedFeatureStructures(annotations);
-	}
-
-	public void changed() {
-		fireChanged();
-	}
-
-	/**
-	 * Retrieves annotations of the given type from the {@link CAS}.
-	 */
-	public Collection<AnnotationFS> getAnnotations(Type type) {
-		FSIndex annotationIndex = mCAS.getAnnotationIndex(type);
-
-		StrictTypeConstraint typeConstrain = new StrictTypeConstraint(type);
-
-		FSIterator strictTypeIterator = mCAS.createFilteredIterator(
-				annotationIndex.iterator(), typeConstrain);
-
-		return fsIteratorToCollection(strictTypeIterator);
-	}
-
-	private Collection<AnnotationFS> fsIteratorToCollection(FSIterator iterator) {
-		LinkedList<AnnotationFS> annotations = new LinkedList<AnnotationFS>();
-		while (iterator.hasNext()) {
-			AnnotationFS annotation = (AnnotationFS) iterator.next();
-
-			annotations.addFirst(annotation);
-		}
-
-		return annotations;
-	}
-
-	/**
-	 * Retrieves the annotations in the given span.
-	 */
-	@Override
-	public Collection<AnnotationFS> getAnnotation(Type type, Span span) {
-		ConstraintFactory cf = getCAS().getConstraintFactory();
-
-		Type annotationType = getCAS().getAnnotationType();
-
-		FeaturePath beginPath = getCAS().createFeaturePath();
-		beginPath.addFeature(annotationType.getFeatureByBaseName("begin"));
-		FSIntConstraint beginConstraint = cf.createIntConstraint();
-		beginConstraint.geq(span.getStart());
+  /**
+   * Initializes a new instance.
+   * 
+   * @param project
+   */
+  public DocumentUimaImpl(CAS cas, InputStream in, DocumentFormat format) throws CoreException {
 
-		FSMatchConstraint embeddedBegin = cf.embedConstraint(beginPath,
-				beginConstraint);
+    mCAS = cas;
 
-		FeaturePath endPath = getCAS().createFeaturePath();
-		endPath.addFeature(annotationType.getFeatureByBaseName("end"));
-		FSIntConstraint endConstraint = cf.createIntConstraint();
-		endConstraint.leq(span.getEnd());
+    mTypeSystem = cas.getTypeSystem();
 
-		FSMatchConstraint embeddedEnd = cf.embedConstraint(endPath,
-				endConstraint);
+    this.format = format;
 
-		FSMatchConstraint strictType = new StrictTypeConstraint(type);
+    setContent(in);
+  }
 
-		FSMatchConstraint annotatioInSpanConstraint = cf.and(embeddedBegin,
-				embeddedEnd);
+  /**
+   * Retrieves the {@link CAS}.
+   */
+  public CAS getCAS() {
+    return mCAS;
+  }
 
-		FSMatchConstraint annotationInSpanAndStrictTypeConstraint = cf.and(
-				annotatioInSpanConstraint, strictType);
+  /**
+   * Adds the given annotation to the {@link CAS}.
+   */
+  public void addFeatureStructure(FeatureStructure annotation) {
+    mCAS.getIndexRepository().addFS(annotation);
 
-		FSIndex allAnnotations = getCAS().getAnnotationIndex(type);
+    fireAddedAnnotation(annotation);
+  }
 
-		FSIterator annotationInsideSpanIndex = getCAS().createFilteredIterator(
-				allAnnotations.iterator(),
-				annotationInSpanAndStrictTypeConstraint);
-
-		return fsIteratorToCollection(annotationInsideSpanIndex);
-	}
-
-	/**
-	 * Retrieves the given type from the {@link TypeSystem}.
-	 */
-	public Type getType(String type) {
-		return getCAS().getTypeSystem().getType(type);
-	}
-
-	/**
-	 * Retrieves the text.
-	 */
-	public String getText() {
-		return mCAS.getDocumentText();
-	}
-
-	/**
-	 * Sets the content. The XCAS {@link InputStream} gets parsed.
-	 */
-	private void setContent(InputStream content) throws CoreException {
-
-		SAXParserFactory saxParserFactory = SAXParserFactory.newInstance();
-		saxParserFactory.setValidating(false);
-
-		SAXParser saxParser;
-
-		try {
-			saxParser = saxParserFactory.newSAXParser();
-		} catch (ParserConfigurationException e) {
-			String message = e.getMessage() != null ? e.getMessage() : "";
-
-			IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID,
-					IStatus.OK, message, e);
-
-			throw new CoreException(s);
-		} catch (SAXException e) {
-			String message = e.getMessage() != null ? e.getMessage() : "";
-
-			IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID,
-					IStatus.OK, message, e);
-
-			throw new CoreException(s);
-		}
-
-		if (DocumentFormat.XCAS.equals(format)) {
-			XCASDeserializer dezerializer = new XCASDeserializer(mTypeSystem);
-
-			try {
-				saxParser.parse(content, dezerializer.getXCASHandler(mCAS));
-			} catch (IOException e) {
-				String message = e.getMessage() != null ? e.getMessage() : "";
-
-				IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID,
-						IStatus.OK, message, e);
-
-				throw new CoreException(s);
-			} catch (SAXException e) {
-				String message = e.getMessage() != null ? e.getMessage() : "";
-
-				IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID,
-						IStatus.OK, message, e);
-
-				throw new CoreException(s);
-			}
-		} else if (DocumentFormat.XMI.equals(format)) {
-			XmiCasDeserializer dezerializer = new XmiCasDeserializer(
-					mTypeSystem);
-
-			try {
-				saxParser.parse(content, dezerializer.getXmiCasHandler(mCAS));
-			} catch (IOException e) {
-				String message = e.getMessage() != null ? e.getMessage() : "";
-
-				IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID,
-						IStatus.OK, message, e);
-
-				throw new CoreException(s);
-			} catch (SAXException e) {
-				String message = e.getMessage() != null ? e.getMessage() : "";
-
-				IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID,
-						IStatus.OK, message, e);
-
-				throw new CoreException(s);
-			}
-		} else {
-			throw new CoreException(
-					new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK,
-							"Unkown file format!", null));
-		}
-	}
-
-	/**
-	 * Serializes the {@link CAS} to the given {@link OutputStream} in the XCAS
-	 * format.
+  /**
+	 *
 	 */
-	public void serialize(OutputStream out) throws CoreException {
-
-		if (DocumentFormat.XCAS.equals(format)) {
-			XCASSerializer xcasSerializer = new XCASSerializer(mCAS
-					.getTypeSystem());
-
-			XMLSerializer xmlSerialzer = new XMLSerializer(out, true);
-
-			try {
-				xcasSerializer
-						.serialize(mCAS, xmlSerialzer.getContentHandler());
-			} catch (IOException e) {
-				String message = e.getMessage() != null ? e.getMessage() : "";
-
-				IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID,
-						IStatus.OK, message, e);
-
-				throw new CoreException(s);
-			} catch (SAXException e) {
-				String message = e.getMessage() != null ? e.getMessage() : "";
-
-				IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID,
-						IStatus.OK, message, e);
-
-				throw new CoreException(s);
-			}
-		} else if (DocumentFormat.XMI.equals(format)) {
-			XmiCasSerializer xmiSerializer = new XmiCasSerializer(mCAS
-					.getTypeSystem());
-
-			XMLSerializer xmlSerialzer = new XMLSerializer(out, true);
-
-			try {
-				xmiSerializer.serialize(mCAS, xmlSerialzer.getContentHandler());
-			} catch (SAXException e) {
-				String message = e.getMessage() != null ? e.getMessage() : "";
-
-				IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID,
-						IStatus.OK, message, e);
-
-				throw new CoreException(s);
-			}
-		} else {
-			throw new CoreException(
-					new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK,
-							"Unkown file format!", null));
-		}
-	}
-}
\ No newline at end of file
+  public void addFeatureStructures(Collection<FeatureStructure> annotations) {
+    for (FeatureStructure annotation : annotations) {
+      addFeatureStructure(annotation);
+    }
+  }
+
+  /**
+   * Remove all annotations. TODO: implement it
+   */
+  public void removeAnnotation() {
+    // must be implemented
+  }
+
+  /**
+   * Internally removes an annotation from the {@link CAS}.
+   * 
+   * @param featureStructure
+   */
+  private void removeAnnotationInternal(FeatureStructure featureStructure) {
+    getCAS().getIndexRepository().removeFS(featureStructure);
+  }
+
+  /**
+   * Removes the annotations from the {@link CAS}.
+   */
+  public void removeFeatureStructure(FeatureStructure annotation) {
+    removeAnnotationInternal(annotation);
+
+    fireRemovedAnnotation(annotation);
+  }
+
+  /**
+   * Removes the given annotations from the {@link CAS}.
+   */
+  public void removeFeatureStructures(Collection<FeatureStructure> annotationsToRemove) {
+
+    for (FeatureStructure annotationToRemove : annotationsToRemove) {
+      removeAnnotationInternal(annotationToRemove);
+    }
+
+    if (annotationsToRemove.size() > 0) {
+      fireRemovedAnnotations(annotationsToRemove);
+    }
+  }
+
+  /**
+   * Notifies clients about the changed annotation.
+   */
+  public void update(FeatureStructure annotation) {
+    fireUpdatedFeatureStructure(annotation);
+  }
+
+  /**
+   * Notifies clients about the changed annotation.
+   */
+  public void updateFeatureStructure(Collection<FeatureStructure> annotations) {
+    fireUpdatedFeatureStructures(annotations);
+  }
+
+  public void changed() {
+    fireChanged();
+  }
+
+  /**
+   * Retrieves annotations of the given type from the {@link CAS}.
+   */
+  public Collection<AnnotationFS> getAnnotations(Type type) {
+    FSIndex annotationIndex = mCAS.getAnnotationIndex(type);
+
+    StrictTypeConstraint typeConstrain = new StrictTypeConstraint(type);
+
+    FSIterator strictTypeIterator =
+            mCAS.createFilteredIterator(annotationIndex.iterator(), typeConstrain);
+
+    return fsIteratorToCollection(strictTypeIterator);
+  }
+
+  private Collection<AnnotationFS> fsIteratorToCollection(FSIterator iterator) {
+    LinkedList<AnnotationFS> annotations = new LinkedList<AnnotationFS>();
+    while (iterator.hasNext()) {
+      AnnotationFS annotation = (AnnotationFS) iterator.next();
+
+      annotations.addFirst(annotation);
+    }
+
+    return annotations;
+  }
+
+  /**
+   * Retrieves the annotations in the given span.
+   */
+  @Override
+  public Collection<AnnotationFS> getAnnotation(Type type, Span span) {
+    ConstraintFactory cf = getCAS().getConstraintFactory();
+
+    Type annotationType = getCAS().getAnnotationType();
+
+    FeaturePath beginPath = getCAS().createFeaturePath();
+    beginPath.addFeature(annotationType.getFeatureByBaseName("begin"));
+    FSIntConstraint beginConstraint = cf.createIntConstraint();
+    beginConstraint.geq(span.getStart());
+
+    FSMatchConstraint embeddedBegin = cf.embedConstraint(beginPath, beginConstraint);
+
+    FeaturePath endPath = getCAS().createFeaturePath();
+    endPath.addFeature(annotationType.getFeatureByBaseName("end"));
+    FSIntConstraint endConstraint = cf.createIntConstraint();
+    endConstraint.leq(span.getEnd());
+
+    FSMatchConstraint embeddedEnd = cf.embedConstraint(endPath, endConstraint);
+
+    FSMatchConstraint strictType = new StrictTypeConstraint(type);
+
+    FSMatchConstraint annotatioInSpanConstraint = cf.and(embeddedBegin, embeddedEnd);
+
+    FSMatchConstraint annotationInSpanAndStrictTypeConstraint =
+            cf.and(annotatioInSpanConstraint, strictType);
+
+    FSIndex allAnnotations = getCAS().getAnnotationIndex(type);
+
+    FSIterator annotationInsideSpanIndex =
+            getCAS().createFilteredIterator(allAnnotations.iterator(),
+            annotationInSpanAndStrictTypeConstraint);
+
+    return fsIteratorToCollection(annotationInsideSpanIndex);
+  }
+
+  /**
+   * Retrieves the given type from the {@link TypeSystem}.
+   */
+  public Type getType(String type) {
+    return getCAS().getTypeSystem().getType(type);
+  }
+
+  /**
+   * Retrieves the text.
+   */
+  public String getText() {
+    return mCAS.getDocumentText();
+  }
+
+  /**
+   * Sets the content. The XCAS {@link InputStream} gets parsed.
+   */
+  private void setContent(InputStream content) throws CoreException {
+
+    SAXParserFactory saxParserFactory = SAXParserFactory.newInstance();
+    saxParserFactory.setValidating(false);
+
+    SAXParser saxParser;
+
+    try {
+      saxParser = saxParserFactory.newSAXParser();
+    } catch (ParserConfigurationException e) {
+      String message = e.getMessage() != null ? e.getMessage() : "";
+
+      IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, message, e);
+
+      throw new CoreException(s);
+    } catch (SAXException e) {
+      String message = e.getMessage() != null ? e.getMessage() : "";
+
+      IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, message, e);
+
+      throw new CoreException(s);
+    }
+
+    if (DocumentFormat.XCAS.equals(format)) {
+      XCASDeserializer dezerializer = new XCASDeserializer(mTypeSystem);
+
+      try {
+        saxParser.parse(content, dezerializer.getXCASHandler(mCAS));
+      } catch (IOException e) {
+        String message = e.getMessage() != null ? e.getMessage() : "";
+
+        IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, message, e);
+
+        throw new CoreException(s);
+      } catch (SAXException e) {
+        String message = e.getMessage() != null ? e.getMessage() : "";
+
+        IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, message, e);
+
+        throw new CoreException(s);
+      }
+    } else if (DocumentFormat.XMI.equals(format)) {
+      XmiCasDeserializer dezerializer = new XmiCasDeserializer(mTypeSystem);
+
+      try {
+        saxParser.parse(content, dezerializer.getXmiCasHandler(mCAS));
+      } catch (IOException e) {
+        String message = e.getMessage() != null ? e.getMessage() : "";
+
+        IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, message, e);
+
+        throw new CoreException(s);
+      } catch (SAXException e) {
+        String message = e.getMessage() != null ? e.getMessage() : "";
+
+        IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, message, e);
+
+        throw new CoreException(s);
+      }
+    } else {
+      throw new CoreException(new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK,
+              "Unkown file format!", null));
+    }
+  }
+
+  /**
+   * Serializes the {@link CAS} to the given {@link OutputStream} in the XCAS format.
+   */
+  public void serialize(OutputStream out) throws CoreException {
+
+    if (DocumentFormat.XCAS.equals(format)) {
+      XCASSerializer xcasSerializer = new XCASSerializer(mCAS.getTypeSystem());
+
+      XMLSerializer xmlSerialzer = new XMLSerializer(out, true);
+
+      try {
+        xcasSerializer.serialize(mCAS, xmlSerialzer.getContentHandler());
+      } catch (IOException e) {
+        String message = e.getMessage() != null ? e.getMessage() : "";
+
+        IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, message, e);
+
+        throw new CoreException(s);
+      } catch (SAXException e) {
+        String message = e.getMessage() != null ? e.getMessage() : "";
+
+        IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, message, e);
+
+        throw new CoreException(s);
+      }
+    } else if (DocumentFormat.XMI.equals(format)) {
+      XmiCasSerializer xmiSerializer = new XmiCasSerializer(mCAS.getTypeSystem());
+
+      XMLSerializer xmlSerialzer = new XMLSerializer(out, true);
+
+      try {
+        xmiSerializer.serialize(mCAS, xmlSerialzer.getContentHandler());
+      } catch (SAXException e) {
+        String message = e.getMessage() != null ? e.getMessage() : "";
+
+        IStatus s = new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK, message, e);
+
+        throw new CoreException(s);
+      }
+    } else {
+      throw new CoreException(new Status(IStatus.ERROR, CasEditorPlugin.ID, IStatus.OK,
+              "Unkown file format!", null));
+    }
+  }
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/EditorAnnotationStatus.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/EditorAnnotationStatus.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/EditorAnnotationStatus.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/EditorAnnotationStatus.java Thu May 21 12:38:53 2009
@@ -33,7 +33,7 @@
  * as the previously opened editor. 
  */
 public class EditorAnnotationStatus {
-	
+
   private String mode;
 
   private Collection<String> displayAnnotations = new HashSet<String>();

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateAction.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateAction.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateAction.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateAction.java Thu May 21 12:38:53 2009
@@ -32,18 +32,18 @@
 
   private AnnotationEditor editor;
   private IFindReplaceTarget target;
-  
+
   FindAnnotateAction(AnnotationEditor editor, IFindReplaceTarget target) {
     this.editor = editor;
     this.target = target;
   }
-  
+
   @Override
   public void run() {
     FindAnnotateDialog dialog = new FindAnnotateDialog(
             Display.getCurrent().getActiveShell(),
             editor.getDocument(), target);
-    
+
     dialog.open();
   }
 }

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateDialog.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateDialog.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateDialog.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/FindAnnotateDialog.java Thu May 21 12:38:53 2009
@@ -54,15 +54,15 @@
   private static final int ANNOTATE_BUTTON = 102;
   private static final int ANNOTATE_ALL_BUTTON = 103;
   private static int CLOSE_BUTTON = 104;
-  
+
   private final IFindReplaceTarget findReplaceTarget;
   private final ICasDocument document;
-  
+
   private Combo findField;
   private TypeCombo typeField;
-  
+
   private Button forwardRadioButton;
-  
+
   FindAnnotateDialog(Shell parentShell, ICasDocument document, IFindReplaceTarget findReplaceTarget) {
     super(parentShell);
     this.document = document;
@@ -73,14 +73,14 @@
   public void create() {
     // calls createContents first
     super.create();
-    
+
     getShell().setText("Find/Annotate");
-    
+
     findField.setText(findReplaceTarget.getSelectionText());
-    
+
     // TODO: set history
   }
-  
+
   /**
    * Creates the search string input field.
    * 
@@ -93,42 +93,42 @@
     GridLayout layout= new GridLayout();
     layout.numColumns= 2;
     panel.setLayout(layout);
-    
+
     // find label
     Label findLabel= new Label(panel, SWT.LEFT);
     findLabel.setText("Find:");
-    
+
     GridData labelData = new GridData();
     labelData.horizontalAlignment =  SWT.LEFT;
     findLabel.setLayoutData(labelData);
-    
+
     // find combo box
     findField = new Combo(panel, SWT.DROP_DOWN | SWT.BORDER);
-    
+
     GridData findFieldData = new GridData();
     findFieldData.horizontalAlignment = SWT.FILL;
     findFieldData.grabExcessHorizontalSpace = true;
     findField.setLayoutData(findFieldData);
-    
+
     // type label
     Label typeLabel= new Label(panel, SWT.LEFT);
     typeLabel.setText("Type:");
     GridData typeData = new GridData();
     typeData.horizontalAlignment =  SWT.LEFT;
     typeLabel.setLayoutData(typeData);
-    
+
     typeField = new TypeCombo(panel,
             document.getCAS().getTypeSystem().getType(CAS.TYPE_NAME_ANNOTATION),
             document.getCAS().getTypeSystem());
-    
+
     GridData typeFieldData = new GridData();
     typeFieldData.horizontalAlignment = SWT.FILL;
     typeFieldData.grabExcessHorizontalSpace = true;
     typeField.setLayoutData(typeFieldData);
-    
+
     return panel;
   }
-  
+
   /**
    * Creates the group to specify the direction of the search.
    * 
@@ -142,24 +142,24 @@
     layout.marginWidth= 0;
     layout.marginHeight= 0;
     panel.setLayout(layout);
-    
+
     Group group= new Group(panel, SWT.SHADOW_ETCHED_IN);
     group.setText("Direction");
     GridLayout groupLayout= new GridLayout();
     groupLayout.numColumns = 2;
     group.setLayout(groupLayout);
     group.setLayoutData(new GridData(SWT.FILL, SWT.FILL, true, true));
-    
+
     forwardRadioButton = new Button(group, SWT.RADIO | SWT.LEFT);
     forwardRadioButton.setText("Forward");
     forwardRadioButton.setSelection(true);
-    
+
     Button backwardRadioButton= new Button(group, SWT.RADIO | SWT.LEFT);
     backwardRadioButton.setText("Backward");
-    
+
     return panel;
   }
-  
+
   /**
    * Creates the find and annotate buttons.
    * 
@@ -169,27 +169,27 @@
    */
   private Composite createButtonSection(Composite parent) {
     Composite panel = new Composite(parent, SWT.NONE);
-    
+
     GridLayout layout = new GridLayout();
-    
+
     // Number of columns should be 2, for each button added to the panel the
     // createButton methods increments numColumns. That means after adding 
     // 3 buttons numColumns is 2.
     layout.numColumns = -1;
-    
+
     panel.setLayout(layout);
-    
+
     createButton(panel, FIND_BUTTON, "Fi&nd",true);
-    
+
     createButton(panel, ANNOTATE_FIND_BUTTON, "Annotate/Fin&d", false);
-    
+
     createButton(panel, ANNOTATE_BUTTON, "&Annotate", false);
-    
-//  createButton(panel, ANNOTATE_ALL_BUTTON, "Anno&tate All", false);
-    
+
+    //  createButton(panel, ANNOTATE_ALL_BUTTON, "Anno&tate All", false);
+
     return panel;
   }
-  
+
   private Composite createStatusAndCloseButton(Composite parent) {
 
     Composite panel= new Composite(parent, SWT.NULL);
@@ -204,25 +204,25 @@
     statusData.horizontalAlignment = SWT.FILL;
     statusData.grabExcessHorizontalSpace= true;
     statusLabel.setLayoutData(statusData);
-    
+
     Button closeButton = createButton(panel, CLOSE_BUTTON, "Close", false);
     GridData closeData = new GridData();
     closeData.horizontalAlignment = SWT.RIGHT;
     closeButton.setLayoutData(closeData);
-//    setGridData(closeButton, SWT.RIGHT, false, SWT.BOTTOM, false);
+    //    setGridData(closeButton, SWT.RIGHT, false, SWT.BOTTOM, false);
 
     return panel;
   }
-  
+
   @Override
   protected Control createContents(Composite parent) {
-    
+
     Composite panel = new Composite(parent, SWT.NULL);
     GridLayout layout= new GridLayout();
     layout.numColumns= 1;
     layout.makeColumnsEqualWidth= true;
     panel.setLayout(layout);
-    
+
     Composite inputPanel = createInputPanel(panel);
     GridData inputPanelData = new GridData();
     inputPanelData.horizontalAlignment =  SWT.FILL;
@@ -230,62 +230,62 @@
     inputPanelData.verticalAlignment = SWT.TOP;
     inputPanelData.grabExcessVerticalSpace = false;
     inputPanel.setLayoutData(inputPanelData);
-    
+
     createDirectionGroup(panel);
-    
+
     Composite buttonFindAnnotatePanel = createButtonSection(panel);
     GridData buttonFindAnnotatePanelData = new GridData();
     buttonFindAnnotatePanelData.horizontalAlignment = SWT.RIGHT;
     buttonFindAnnotatePanelData.grabExcessHorizontalSpace = true;
     buttonFindAnnotatePanel.setLayoutData(buttonFindAnnotatePanelData);
-    
+
     Composite statusAndClosePanel = createStatusAndCloseButton(panel);
     GridData statusAndClosePanelData = new GridData();
     statusAndClosePanelData.horizontalAlignment = SWT.FILL;
     statusAndClosePanelData.grabExcessVerticalSpace = true;
     statusAndClosePanel.setLayoutData(statusAndClosePanelData);
-    
+
     applyDialogFont(panel);
-    
+
     return panel;
   }
-  
+
   /**
    * Finds the next occurrence of the search string and selects it in
    * the editor.
    */
   private void findAndSelectNext() {
-    
+
     boolean isForwardSearch = forwardRadioButton.getSelection();
-    
+
     int textOffset = -1;
-    
+
     if (isForwardSearch) {
       textOffset = findReplaceTarget.getSelection().x + findReplaceTarget.getSelection().y;
     }
     else {
       textOffset = findReplaceTarget.getSelection().x - 1;
     }
-    
+
     int result = findReplaceTarget.findAndSelect(textOffset, findField.getText(), isForwardSearch, false, false);
-    
+
     if (result == -1) {
       findReplaceTarget.findAndSelect(-1, findField.getText(), isForwardSearch, false, false);
     }
   }
-  
+
   private void annotateSelection() {
     Point selection = findReplaceTarget.getSelection();
-    
+
     FeatureStructure newAnnotation = document.getCAS().createAnnotation(
             typeField.getType(), selection.x, selection.x + selection.y);
     document.getCAS().addFsToIndexes(newAnnotation);
     document.addFeatureStructure(newAnnotation);
   }
-  
+
   @Override
   protected void buttonPressed(int buttonID) {
-    
+
     if (FIND_BUTTON == buttonID) {
       findAndSelectNext();
     }
@@ -293,8 +293,8 @@
       annotateSelection();
     }
     else if (ANNOTATE_FIND_BUTTON == buttonID) {
-       annotateSelection();
-       findAndSelectNext();
+      annotateSelection();
+      findAndSelectNext();
     }
     else if (ANNOTATE_ALL_BUTTON == buttonID) {
     }
@@ -302,7 +302,7 @@
       close();
     }
     else {
-        throw new TaeError("Unkown button!");
+      throw new TaeError("Unkown button!");
     }
   }
 }

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/IAnnotationEditorModifyListener.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/IAnnotationEditorModifyListener.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/IAnnotationEditorModifyListener.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/IAnnotationEditorModifyListener.java Thu May 21 12:38:53 2009
@@ -24,14 +24,14 @@
 import org.apache.uima.cas.Type;
 
 public interface IAnnotationEditorModifyListener {
-	
+
   /**
    * Called when the editor annotation mode changed.
    *
    * @param newMode
    */
   public void annotationModeChanged(Type newMode);
-  
+
   /**
    * Called when the shown annotation types in the editor are changed.
    * 

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/QuickTypeSelectionDialog.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/QuickTypeSelectionDialog.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/QuickTypeSelectionDialog.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/QuickTypeSelectionDialog.java Thu May 21 12:38:53 2009
@@ -61,8 +61,7 @@
 import org.eclipse.swt.widgets.TreeItem;
 
 /**
- * This is a lightweight popup dialog which creates an annotation of the
- * chosen type.
+ * This is a lightweight popup dialog which creates an annotation of the chosen type.
  */
 class QuickTypeSelectionDialog extends PopupDialog {
 
@@ -76,14 +75,13 @@
 
   /**
    * Initializes the current instance.
-   *
+   * 
    * @param parent
    * @param editor
    */
   @SuppressWarnings("deprecation")
   QuickTypeSelectionDialog(Shell parent, AnnotationEditor editor) {
-    super(parent, PopupDialog.INFOPOPUPRESIZE_SHELLSTYLE, true, true,
-    			false, true, null, null);
+    super(parent, PopupDialog.INFOPOPUPRESIZE_SHELLSTYLE, true, true, false, true, null, null);
 
     this.editor = editor;
 
@@ -95,100 +93,100 @@
     Set<Character> shortcuts = new HashSet<Character>();
 
     for (int i = 0; i < shortcutsString.length(); i++) {
-    	shortcuts.add(shortcutsString.charAt(i));
+      shortcuts.add(shortcutsString.charAt(i));
     }
 
     List<Type> types = new ArrayList<Type>();
-   	Collections.addAll(types, getTypes());
-   	Collections.sort(types, new Comparator<Type>() {
-		public int compare(Type o1, Type o2) {
-			return o1.getName().compareTo(o2.getName());
-		}
-   	});
-
-   	// Try to create mappings with first letter of the type name as shortcut
-   	for (Iterator<Type> it = types.iterator(); it.hasNext();) {
-
-   		Type type = it.next();
-
-   		String name = type.getShortName();
-
-   		Character candidateChar = Character.toLowerCase(name.charAt(0));
-
-   		if (shortcuts.contains(candidateChar)) {
-   			putShortcut(candidateChar, type);
-
-   			shortcuts.remove(candidateChar);
-   			it.remove();
-   		}
-   	}
-
-   	// Try to create mappings with second letter of the type name as shortcut
-   	for (Iterator<Type> it = types.iterator(); it.hasNext();) {
-
-   		Type type = it.next();
-
-   		String name = type.getShortName();
-
-   		if (name.length() > 2) {
-	   		Character candidateChar = Character.toLowerCase(name.charAt(1));
-	
-	   		if (shortcuts.contains(candidateChar)) {
-	   			putShortcut(candidateChar, type);
-	
-	   			shortcuts.remove(candidateChar);
-	   			it.remove();
-	   		}
-   		}
-   	}
-   	
-   	// Now assign letters to the remaining types
-   	for (Iterator<Type> it = types.iterator(); it.hasNext();) {
-
-   		if (shortcuts.size() > 0) {
-
-   			Character candidateChar = shortcuts.iterator().next();
-
-   			putShortcut(candidateChar, it.next());
-
-   			shortcuts.remove(candidateChar);
-   			it.remove();
-   		}
-   	}
+    Collections.addAll(types, getTypes());
+    Collections.sort(types, new Comparator<Type>() {
+      public int compare(Type o1, Type o2) {
+        return o1.getName().compareTo(o2.getName());
+      }
+    });
+
+    // Try to create mappings with first letter of the type name as shortcut
+    for (Iterator<Type> it = types.iterator(); it.hasNext();) {
+
+      Type type = it.next();
+
+      String name = type.getShortName();
+
+      Character candidateChar = Character.toLowerCase(name.charAt(0));
+
+      if (shortcuts.contains(candidateChar)) {
+        putShortcut(candidateChar, type);
+
+        shortcuts.remove(candidateChar);
+        it.remove();
+      }
+    }
+
+    // Try to create mappings with second letter of the type name as shortcut
+    for (Iterator<Type> it = types.iterator(); it.hasNext();) {
+
+      Type type = it.next();
+
+      String name = type.getShortName();
+
+      if (name.length() > 2) {
+        Character candidateChar = Character.toLowerCase(name.charAt(1));
+
+        if (shortcuts.contains(candidateChar)) {
+          putShortcut(candidateChar, type);
+
+          shortcuts.remove(candidateChar);
+          it.remove();
+        }
+      }
+    }
+
+    // Now assign letters to the remaining types
+    for (Iterator<Type> it = types.iterator(); it.hasNext();) {
+
+      if (shortcuts.size() > 0) {
+
+        Character candidateChar = shortcuts.iterator().next();
+
+        putShortcut(candidateChar, it.next());
+
+        shortcuts.remove(candidateChar);
+        it.remove();
+      }
+    }
   }
 
   private void putShortcut(Character shortcut, Type type) {
-	  shortcutTypeMap.put(shortcut, type);
-	  typeShortcutMap.put(type, shortcut);
+    shortcutTypeMap.put(shortcut, type);
+    typeShortcutMap.put(type, shortcut);
   }
 
   private Type[] getTypes() {
 
-	  TypeSystem typeSystem = editor.getDocument().getCAS().getTypeSystem();
+    TypeSystem typeSystem = editor.getDocument().getCAS().getTypeSystem();
 
-      List<Type> types = typeSystem.getProperlySubsumedTypes(typeSystem
-              .getType(CAS.TYPE_NAME_ANNOTATION));
+    List<Type> types =
+            typeSystem.getProperlySubsumedTypes(typeSystem.getType(CAS.TYPE_NAME_ANNOTATION));
 
-      return types.toArray(new Type[types.size()]);
+    return types.toArray(new Type[types.size()]);
   }
 
   private void annotateAndClose(Type annotationType) {
-		if (annotationType != null) {
-			Point textSelection = editor.getSelection();
+    if (annotationType != null) {
+      Point textSelection = editor.getSelection();
 
-			AnnotationFS annotation = editor.getDocument().getCAS()
-					.createAnnotation(annotationType, textSelection.x,
-							textSelection.y);
-
-			editor.getDocument().addFeatureStructure(annotation);
-
-			if (annotation.getType().equals(editor.getAnnotationMode())) {
-				editor.setAnnotationSelection(annotation);
-			}
-		}
+      AnnotationFS annotation =
+              editor.getDocument().getCAS().createAnnotation(annotationType, textSelection.x,
+                      textSelection.y);
 
-		QuickTypeSelectionDialog.this.close();
-	}
+      editor.getDocument().addFeatureStructure(annotation);
+
+      if (annotation.getType().equals(editor.getAnnotationMode())) {
+        editor.setAnnotationSelection(annotation);
+      }
+    }
+
+    QuickTypeSelectionDialog.this.close();
+  }
 
   @Override
   protected Control createDialogArea(Composite parent) {
@@ -206,8 +204,8 @@
     separator.setLayoutData(new GridData(GridData.FILL_HORIZONTAL));
 
     final TreeViewer typeTree = new TreeViewer(composite, SWT.SINGLE | SWT.V_SCROLL);
-    typeTree.getControl().setLayoutData(new GridData(GridData.FILL_HORIZONTAL |
-            GridData.FILL_VERTICAL));
+    typeTree.getControl().setLayoutData(
+            new GridData(GridData.FILL_HORIZONTAL | GridData.FILL_VERTICAL));
 
     typeTree.getControl().setFocus();
 
@@ -221,7 +219,7 @@
 
           if (tree.getItemCount() > 0) {
 
-        	  tree.setSelection(tree.getItem(0));
+            tree.setSelection(tree.getItem(0));
           }
         }
       }
@@ -246,7 +244,7 @@
       }
 
       public Object[] getElements(Object inputElement) {
-    	  return (Type[]) inputElement;
+        return (Type[]) inputElement;
       }
 
       public void dispose() {
@@ -267,54 +265,53 @@
       }
     } });
 
+    typeTree.setLabelProvider(new ILabelProvider() {
 
-    typeTree.setLabelProvider(new ILabelProvider(){
-
-		public Image getImage(Object element) {
-			return null;
-		}
+      public Image getImage(Object element) {
+        return null;
+      }
 
-		public String getText(Object element) {
+      public String getText(Object element) {
 
-			Type type = (Type) element;
+        Type type = (Type) element;
 
-			Character key = typeShortcutMap.get(type);
+        Character key = typeShortcutMap.get(type);
 
-			if (typeShortcutMap != null) {
-				return "[" + key +"] " + type.getShortName();
-			}
-			else {
-				return type.getShortName();
-			}
-		}
+        if (typeShortcutMap != null) {
+          return "[" + key + "] " + type.getShortName();
+        } else {
+          return type.getShortName();
+        }
+      }
 
-		public void addListener(ILabelProviderListener listener) {
+      public void addListener(ILabelProviderListener listener) {
 
-		}
+      }
 
-		public void dispose() {
-		}
+      public void dispose() {
+      }
 
-		public boolean isLabelProperty(Object element, String property) {
-			return false;
-		}
+      public boolean isLabelProperty(Object element, String property) {
+        return false;
+      }
 
-		public void removeListener(ILabelProviderListener listener) {
-		}});
+      public void removeListener(ILabelProviderListener listener) {
+      }
+    });
 
     typeTree.getControl().addKeyListener(new KeyListener() {
 
-		public void keyPressed(KeyEvent e) {
-        	Type type = shortcutTypeMap.get(Character.toLowerCase(e.character));
-
-        	if (type != null) {
-        		annotateAndClose(type);
-        	}
-		}
+      public void keyPressed(KeyEvent e) {
+        Type type = shortcutTypeMap.get(Character.toLowerCase(e.character));
 
-		public void keyReleased(KeyEvent e) {
-		}});
+        if (type != null) {
+          annotateAndClose(type);
+        }
+      }
 
+      public void keyReleased(KeyEvent e) {
+      }
+    });
 
     typeTree.getControl().addMouseMoveListener(new MouseMoveListener() {
 
@@ -343,8 +340,7 @@
 
     typeTree.setInput(getTypes());
 
-    ISelection modeSelection = new StructuredSelection(new Object[] {
-    		editor.getAnnotationMode()});
+    ISelection modeSelection = new StructuredSelection(new Object[] { editor.getAnnotationMode() });
 
     typeTree.setSelection(modeSelection, true);
 
@@ -355,4 +351,4 @@
   protected Point getInitialSize() {
     return new Point(250, 300);
   }
-}
\ No newline at end of file
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/util/IDGenerator.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/util/IDGenerator.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/util/IDGenerator.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/editor/util/IDGenerator.java Thu May 21 12:38:53 2009
@@ -65,8 +65,8 @@
     }
 
     byte[] id = new byte[] { (byte) (sUniqueID >> 56), (byte) (sUniqueID >> 48),
-        (byte) (sUniqueID >> 40), (byte) (sUniqueID >> 32), (byte) (sUniqueID >> 24),
-        (byte) (sUniqueID >> 16), (byte) (sUniqueID >> 8), (byte) sUniqueID, };
+            (byte) (sUniqueID >> 40), (byte) (sUniqueID >> 32), (byte) (sUniqueID >> 24),
+            (byte) (sUniqueID >> 16), (byte) (sUniqueID >> 8), (byte) sUniqueID, };
 
     sUniqueID++;
     return id;
@@ -84,4 +84,4 @@
 
     return sIdGeneratorInstance;
   }
-}
\ No newline at end of file
+}

Modified: incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/ui/NlpPerspectiveFactory.java
URL: http://svn.apache.org/viewvc/incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/ui/NlpPerspectiveFactory.java?rev=777093&r1=777092&r2=777093&view=diff
==============================================================================
--- incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/ui/NlpPerspectiveFactory.java (original)
+++ incubator/uima/sandbox/trunk/CasEditorEclipsePlugin/src/main/java/org/apache/uima/caseditor/ui/NlpPerspectiveFactory.java Thu May 21 12:38:53 2009
@@ -36,65 +36,65 @@
  */
 public class NlpPerspectiveFactory implements IPerspectiveFactory
 {
-    /**
-     * ID of the perspective factory. Use this ID for example in the plugin.xml
-     * file.
-     */
-    public static String ID = "Annotator.perspective.NLP";
-
-    /**
-     * Define the initial layout of the nlp perspective
-     */
-    public void createInitialLayout(IPageLayout layout)
-    {
-        defineActions(layout);
-        defineLayout(layout);
-    }
-
-    private void defineActions(IPageLayout layout)
-    {
-        // add "new wizards"
-        layout.addNewWizardShortcut(NewNlpProjectWizard.ID);
-//        layout.addNewWizardShortcut(NewCorpusWizard.ID);
-        layout.addNewWizardShortcut(WizardNewFolderCreation.ID);
-        layout.addNewWizardShortcut(WizardNewFileCreation.ID);
-
-        // layout.addNewWizardShortcut("Annotator.NewDocumentWizard");
-
-        // add "show views"
-        layout.addShowViewShortcut(CorpusExplorerView.ID);
-        layout.addShowViewShortcut(IPageLayout.ID_OUTLINE);
-
-        // add "open perspective"
-        layout.addPerspectiveShortcut(NlpPerspectiveFactory.ID);
-    }
-
-    private void defineLayout(IPageLayout layout)
-    {
-        String editorArea = layout.getEditorArea();
-
-        // left views
-        IFolderLayout left = layout.createFolder("left", IPageLayout.LEFT,
-                0.19f, editorArea);
-        left.addView(CorpusExplorerView.ID);
-
-        // right views
-        IFolderLayout right = layout.createFolder("right", IPageLayout.RIGHT,
-                0.70f, editorArea);
-
-        right.addView(IPageLayout.ID_OUTLINE);
-        right.addView(FeatureStructureBrowserView.ID);
-        right.addView("org.eclipse.pde.runtime.LogView");
-
-        // bottom views
-        IFolderLayout rightBottom = layout.createFolder("rightBottom",
-                IPageLayout.BOTTOM, 0.75f, editorArea);
-
-        rightBottom.addView(EditView.ID);
-
-        IFolderLayout leftBottom = layout.createFolder("leftBottom",
-                IPageLayout.RIGHT, 0.5f, EditView.ID);
-
-        leftBottom.addView(EditView.ID_2);
-    }
-}
\ No newline at end of file
+  /**
+   * ID of the perspective factory. Use this ID for example in the plugin.xml
+   * file.
+   */
+  public static String ID = "Annotator.perspective.NLP";
+
+  /**
+   * Define the initial layout of the nlp perspective
+   */
+  public void createInitialLayout(IPageLayout layout)
+  {
+    defineActions(layout);
+    defineLayout(layout);
+  }
+
+  private void defineActions(IPageLayout layout)
+  {
+    // add "new wizards"
+    layout.addNewWizardShortcut(NewNlpProjectWizard.ID);
+    //        layout.addNewWizardShortcut(NewCorpusWizard.ID);
+    layout.addNewWizardShortcut(WizardNewFolderCreation.ID);
+    layout.addNewWizardShortcut(WizardNewFileCreation.ID);
+
+    // layout.addNewWizardShortcut("Annotator.NewDocumentWizard");
+
+    // add "show views"
+    layout.addShowViewShortcut(CorpusExplorerView.ID);
+    layout.addShowViewShortcut(IPageLayout.ID_OUTLINE);
+
+    // add "open perspective"
+    layout.addPerspectiveShortcut(NlpPerspectiveFactory.ID);
+  }
+
+  private void defineLayout(IPageLayout layout)
+  {
+    String editorArea = layout.getEditorArea();
+
+    // left views
+    IFolderLayout left = layout.createFolder("left", IPageLayout.LEFT,
+            0.19f, editorArea);
+    left.addView(CorpusExplorerView.ID);
+
+    // right views
+    IFolderLayout right = layout.createFolder("right", IPageLayout.RIGHT,
+            0.70f, editorArea);
+
+    right.addView(IPageLayout.ID_OUTLINE);
+    right.addView(FeatureStructureBrowserView.ID);
+    right.addView("org.eclipse.pde.runtime.LogView");
+
+    // bottom views
+    IFolderLayout rightBottom = layout.createFolder("rightBottom",
+            IPageLayout.BOTTOM, 0.75f, editorArea);
+
+    rightBottom.addView(EditView.ID);
+
+    IFolderLayout leftBottom = layout.createFolder("leftBottom",
+            IPageLayout.RIGHT, 0.5f, EditView.ID);
+
+    leftBottom.addView(EditView.ID_2);
+  }
+}