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Posted to dev@airavata.apache.org by "Heshan Suriyaarachchi (JIRA)" <ji...@apache.org> on 2013/04/10 16:22:15 UTC
[jira] [Updated] (AIRAVATA-819) Support the workflows with forEach
inputs to get inputs from file
[ https://issues.apache.org/jira/browse/AIRAVATA-819?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Heshan Suriyaarachchi updated AIRAVATA-819:
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Description:
Let me explain what I've meant here.
In case of a usecase like gene sequence alignment, you might give 1000s of gene sequences as the input. In a situation like that, what we have to do is to have comma separated string with the inputs. In my usecase, it's not practical because a single sequence strand is having a substantial length. Therefore, I think it'll be easier for the user, if we provide a mechanism where the user can give the input as a file and instead of the comma delimiter, we could use a "new line".
This is something which I felt needed when doing some testing with the EC2Provider.
was:
Let me explain what I've meant here.
In case of a usecase like gene sequence alignment, you might give 1000s of gene sequences as the input. In a situation like that, in the current trunk what we have to do is to have comma seperated string with the inputs. In the usecase that I mentioned. It's not that practical because a single sequence strand is having a substantial length. Therefore, I think it'll be easier for the user, if we provide a mechanisam where the user can give the input as a file and instead of the comma delimeter, we could use a "new line".
This is something which I felt needed when doing some testing with the EC2Provider.
> Support the workflows with forEach inputs to get inputs from file
> -----------------------------------------------------------------
>
> Key: AIRAVATA-819
> URL: https://issues.apache.org/jira/browse/AIRAVATA-819
> Project: Airavata
> Issue Type: Improvement
> Affects Versions: 0.7
> Reporter: Heshan Suriyaarachchi
> Fix For: 0.8
>
>
> Let me explain what I've meant here.
> In case of a usecase like gene sequence alignment, you might give 1000s of gene sequences as the input. In a situation like that, what we have to do is to have comma separated string with the inputs. In my usecase, it's not practical because a single sequence strand is having a substantial length. Therefore, I think it'll be easier for the user, if we provide a mechanism where the user can give the input as a file and instead of the comma delimiter, we could use a "new line".
> This is something which I felt needed when doing some testing with the EC2Provider.
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