You are viewing a plain text version of this content. The canonical link for it is here.
Posted to dev@airavata.apache.org by Lahiru Gunathilake <gl...@gmail.com> on 2014/07/07 14:35:04 UTC
Error during start up of Airavata
[ERROR] Error occurred while executing : /* * * Licensed to the Apache
Software Foundation (ASF) under one * or more contributor license
agreements. See the NOTICE file * distributed with this work for
additional information * regarding copyright ownership. The ASF licenses
this file * to you under the Apache License, Version 2.0 (the * "License");
you may not use this file except in compliance * with the License. You may
obtain a copy of the License at * *
http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
applicable law or agreed to in writing, * software distributed under the
License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
CONDITIONS OF ANY * KIND, either express or implied. See the License for
the * specific language governing permissions and limitations * under the
License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
java.lang.Exception: Error occurred while executing : /* * * Licensed to
the Apache Software Foundation (ASF) under one * or more contributor
license agreements. See the NOTICE file * distributed with this work for
additional information * regarding copyright ownership. The ASF licenses
this file * to you under the Apache License, Version 2.0 (the * "License");
you may not use this file except in compliance * with the License. You may
obtain a copy of the License at * *
http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
applicable law or agreed to in writing, * software distributed under the
License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
CONDITIONS OF ANY * KIND, either express or implied. See the License for
the * specific language governing permissions and limitations * under the
License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
at
org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
at
org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
at
org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
at
org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
at
org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
at
org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
at
org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
at
org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
at
org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
column 982. Encountered: <EOF> after : "".
at org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
Source)
at org.apache.derby.client.am.SqlException.getSQLException(Unknown Source)
at org.apache.derby.client.am.Statement.execute(Unknown Source)
at
org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
... 9 more
Caused by: org.apache.derby.client.am.SqlException: Lexical error at line
1, column 982. Encountered: <EOF> after : "".
at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
at org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
Source)
at
org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
Source)
at
org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
Source)
at
org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
Source)
at
org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
Source)
at org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
Source)
at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
at org.apache.derby.client.am.Statement.executeX(Unknown Source)
... 11 more
[ERROR] Server Start Error:
java.lang.RuntimeException: Database failure
at
org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:87)
at
org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
at
org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
at
org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
at
org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
Caused by: java.lang.Exception: Error occurred while executing : /* * *
Licensed to the Apache Software Foundation (ASF) under one * or more
contributor license agreements. See the NOTICE file * distributed with
this work for additional information * regarding copyright ownership. The
ASF licenses this file * to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance * with the
License. You may obtain a copy of the License at * *
http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
applicable law or agreed to in writing, * software distributed under the
License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
CONDITIONS OF ANY * KIND, either express or implied. See the License for
the * specific language governing permissions and limitations * under the
License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
at
org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
at
org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
at
org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
at
org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
at
org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
... 5 more
Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
column 982. Encountered: <EOF> after : "".
at org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
Source)
at org.apache.derby.client.am.SqlException.getSQLException(Unknown Source)
at org.apache.derby.client.am.Statement.execute(Unknown Source)
at
org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
... 9 more
Caused by: org.apache.derby.client.am.SqlException: Lexical error at line
1, column 982. Encountered: <EOF> after : "".
at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
at org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
Source)
at
org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
Source)
at
org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
Source)
at
org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
Source)
at
org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
Source)
at org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
Source)
at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
at org.apache.derby.client.am.Statement.executeX(Unknown Source)
... 11 more
[INFO] Initiating client connection, con
--
System Analyst Programmer
PTI Lab
Indiana University
Re: Error during start up of Airavata
Posted by Saminda Wijeratne <sa...@gmail.com>.
See DocumentCreatorNew class which uses the thrift api to add the
applications, deployments etc.
On Mon, Jul 7, 2014 at 10:22 AM, Lahiru Gunathilake <gl...@gmail.com>
wrote:
> is there a client code to test a job ?
>
>
> On Mon, Jul 7, 2014 at 10:20 AM, Chathuri Wimalasena <kamalasini@gmail.com
> > wrote:
>
>> Hi Lahiru,
>>
>> There is no separate app-catalog server now. App-catalog database will
>> start when airavata server starts. All the app-catalog API methods will be
>> at the same airavata-api.
>>
>>
>> On Mon, Jul 7, 2014 at 10:14 AM, Lahiru Gunathilake <gl...@gmail.com>
>> wrote:
>>
>>> Hi Saminda,
>>>
>>> Is there any sample that I can test a simple scenario ? Now I can build
>>> but I can see app-catalog server is not starting because its disabled in
>>> airavata-server.properties.
>>>
>>> Please let me know when its ready.
>>>
>>> Lahiru
>>>
>>>
>>> On Mon, Jul 7, 2014 at 9:33 AM, Marlon Pierce <ma...@iu.edu> wrote:
>>>
>>>> git pull updated a pom.xml, This time I got to the end but failed on
>>>> "Airavata release artifacts". It looks like there are more commits after I
>>>> started the build, so I'll be patient.
>>>>
>>>> Marlon
>>>>
>>>>
>>>> On 7/7/14, 9:25 AM, Suresh Marru wrote:
>>>>
>>>>> Looks like a missing dependency. Can u take a pull and retry?
>>>>>
>>>>> Suresh
>>>>>
>>>>> On Jul 7, 2014, at 9:19 AM, Marlon Pierce <ma...@iu.edu> wrote:
>>>>>
>>>>> Same problems for me.
>>>>>>
>>>>>> On 7/7/14, 9:08 AM, Lahiru Gunathilake wrote:
>>>>>>
>>>>>>> I get this error during building,
>>>>>>>
>>>>>>> [ERROR] Failed to execute goal
>>>>>>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
>>>>>>> (default-compile) on project airavata-client-api: Compilation
>>>>>>> failure:
>>>>>>> Compilation failure:
>>>>>>> [ERROR]
>>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>>> tools/DocumentCreatorNew.java:[28,31]
>>>>>>> package org.apache.airavata.api does not exist
>>>>>>> [ERROR]
>>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>>> tools/DocumentCreatorNew.java:[56,21]
>>>>>>> package Airavata does not exist
>>>>>>> [ERROR]
>>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>>> tools/DocumentCreatorNew.java:[59,39]
>>>>>>> package Airavata does not exist
>>>>>>> [ERROR]
>>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>>> tools/DocumentCreatorNew.java:[28,31]
>>>>>>> package org.apache.airavata.api does not exist
>>>>>>> [ERROR]
>>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>>> tools/DocumentCreatorNew.java:[56,21]
>>>>>>> package Airavata does not exist
>>>>>>> [ERROR]
>>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>>> tools/DocumentCreatorNew.java:[59,39]
>>>>>>> package Airavata does not exist
>>>>>>> [ERROR] -> [Help 1]
>>>>>>> [ERROR]
>>>>>>> [ERROR] To see the full stack trace of the errors, re-run Maven with
>>>>>>> the -e
>>>>>>> switch.
>>>>>>> [ERROR] Re-run Maven using the -X switch to enable full debug
>>>>>>> logging.
>>>>>>> [ERROR]
>>>>>>> [ERROR] For more information about the errors and possible solutions,
>>>>>>> please read the following articles:
>>>>>>> [ERROR] [Help 1]
>>>>>>> http://cwiki.apache.org/confluence/display/MAVEN/
>>>>>>> MojoFailureException
>>>>>>> [ERROR]
>>>>>>> [ERROR] After correcting the problems, you can resume the build with
>>>>>>> the
>>>>>>> command
>>>>>>> [ERROR] mvn <goals> -rf :airavata-client-api
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <
>>>>>>> glahiru@gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>> Hi Saminda,
>>>>>>>>
>>>>>>>> I got more updates just now. I will build again and see.
>>>>>>>>
>>>>>>>> Thanks
>>>>>>>> Lahiru
>>>>>>>>
>>>>>>>>
>>>>>>>> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <
>>>>>>>> samindaw@gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>> hmm... I thought I fixed this issue yesterday. Do you have the
>>>>>>>>> latest
>>>>>>>>> trunk?
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <
>>>>>>>>> glahiru@gmail.com>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>> [ERROR] Error occurred while executing : /* * * Licensed to the
>>>>>>>>>> Apache
>>>>>>>>>> Software Foundation (ASF) under one * or more contributor license
>>>>>>>>>> agreements. See the NOTICE file * distributed with this work for
>>>>>>>>>> additional information * regarding copyright ownership. The ASF
>>>>>>>>>> licenses
>>>>>>>>>> this file * to you under the Apache License, Version 2.0 (the *
>>>>>>>>>> "License");
>>>>>>>>>> you may not use this file except in compliance * with the
>>>>>>>>>> License. You may
>>>>>>>>>> obtain a copy of the License at * *
>>>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>>>> under the
>>>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES
>>>>>>>>>> OR
>>>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>>>>> License for
>>>>>>>>>> the * specific language governing permissions and limitations *
>>>>>>>>>> under the
>>>>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>>>> VARCHAR(255),
>>>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>>>> java.lang.Exception: Error occurred while executing : /* * *
>>>>>>>>>> Licensed
>>>>>>>>>> to the Apache Software Foundation (ASF) under one * or more
>>>>>>>>>> contributor
>>>>>>>>>> license agreements. See the NOTICE file * distributed with this
>>>>>>>>>> work for
>>>>>>>>>> additional information * regarding copyright ownership. The ASF
>>>>>>>>>> licenses
>>>>>>>>>> this file * to you under the Apache License, Version 2.0 (the *
>>>>>>>>>> "License");
>>>>>>>>>> you may not use this file except in compliance * with the
>>>>>>>>>> License. You may
>>>>>>>>>> obtain a copy of the License at * *
>>>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>>>> under the
>>>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES
>>>>>>>>>> OR
>>>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>>>>> License for
>>>>>>>>>> the * specific language governing permissions and limitations *
>>>>>>>>>> under the
>>>>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>>>> VARCHAR(255),
>>>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> createDatabase(DatabaseCreator.java:234)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>>>> initializeDB(AppCatalogInitUtil.java:80)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>>>>> ServerMain.java:266)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>>>>> ServerMain.java:121)
>>>>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.
>>>>>>>>>> java:113)
>>>>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at
>>>>>>>>>> line 1,
>>>>>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>>>>> getSQLException(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(
>>>>>>>>>> Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>>>>> ... 9 more
>>>>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical
>>>>>>>>>> error at
>>>>>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>>> parsePrepareError(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.NetStatement.
>>>>>>>>>> readPrepareDescribeOutput_(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>>>>> Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>>>>> ... 11 more
>>>>>>>>>> [ERROR] Server Start Error:
>>>>>>>>>> java.lang.RuntimeException: Database failure
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>>>> initializeDB(AppCatalogInitUtil.java:87)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>>>>> ServerMain.java:266)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>>>>> ServerMain.java:121)
>>>>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.
>>>>>>>>>> java:113)
>>>>>>>>>> Caused by: java.lang.Exception: Error occurred while executing :
>>>>>>>>>> /* * *
>>>>>>>>>> Licensed to the Apache Software Foundation (ASF) under one * or
>>>>>>>>>> more
>>>>>>>>>> contributor license agreements. See the NOTICE file *
>>>>>>>>>> distributed with
>>>>>>>>>> this work for additional information * regarding copyright
>>>>>>>>>> ownership. The
>>>>>>>>>> ASF licenses this file * to you under the Apache License, Version
>>>>>>>>>> 2.0 (the
>>>>>>>>>> * "License"); you may not use this file except in compliance *
>>>>>>>>>> with the
>>>>>>>>>> License. You may obtain a copy of the License at * *
>>>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>>>> under the
>>>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES
>>>>>>>>>> OR
>>>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>>>>> License for
>>>>>>>>>> the * specific language governing permissions and limitations *
>>>>>>>>>> under the
>>>>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>>>> VARCHAR(255),
>>>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> createDatabase(DatabaseCreator.java:234)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>>>> initializeDB(AppCatalogInitUtil.java:80)
>>>>>>>>>> ... 5 more
>>>>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at
>>>>>>>>>> line 1,
>>>>>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>>>>> getSQLException(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(
>>>>>>>>>> Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>>>>> ... 9 more
>>>>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical
>>>>>>>>>> error at
>>>>>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>>> parsePrepareError(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.net.NetStatement.
>>>>>>>>>> readPrepareDescribeOutput_(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at
>>>>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>>>>> Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>>>>> Source)
>>>>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>>>>> ... 11 more
>>>>>>>>>> [INFO] Initiating client connection, con
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> System Analyst Programmer
>>>>>>>>>> PTI Lab
>>>>>>>>>> Indiana University
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>> System Analyst Programmer
>>>>>>>> PTI Lab
>>>>>>>> Indiana University
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>
>>>
>>>
>>> --
>>> System Analyst Programmer
>>> PTI Lab
>>> Indiana University
>>>
>>
>>
>
>
> --
> System Analyst Programmer
> PTI Lab
> Indiana University
>
Re: Error during start up of Airavata
Posted by Lahiru Gunathilake <gl...@gmail.com>.
is there a client code to test a job ?
On Mon, Jul 7, 2014 at 10:20 AM, Chathuri Wimalasena <ka...@gmail.com>
wrote:
> Hi Lahiru,
>
> There is no separate app-catalog server now. App-catalog database will
> start when airavata server starts. All the app-catalog API methods will be
> at the same airavata-api.
>
>
> On Mon, Jul 7, 2014 at 10:14 AM, Lahiru Gunathilake <gl...@gmail.com>
> wrote:
>
>> Hi Saminda,
>>
>> Is there any sample that I can test a simple scenario ? Now I can build
>> but I can see app-catalog server is not starting because its disabled in
>> airavata-server.properties.
>>
>> Please let me know when its ready.
>>
>> Lahiru
>>
>>
>> On Mon, Jul 7, 2014 at 9:33 AM, Marlon Pierce <ma...@iu.edu> wrote:
>>
>>> git pull updated a pom.xml, This time I got to the end but failed on
>>> "Airavata release artifacts". It looks like there are more commits after I
>>> started the build, so I'll be patient.
>>>
>>> Marlon
>>>
>>>
>>> On 7/7/14, 9:25 AM, Suresh Marru wrote:
>>>
>>>> Looks like a missing dependency. Can u take a pull and retry?
>>>>
>>>> Suresh
>>>>
>>>> On Jul 7, 2014, at 9:19 AM, Marlon Pierce <ma...@iu.edu> wrote:
>>>>
>>>> Same problems for me.
>>>>>
>>>>> On 7/7/14, 9:08 AM, Lahiru Gunathilake wrote:
>>>>>
>>>>>> I get this error during building,
>>>>>>
>>>>>> [ERROR] Failed to execute goal
>>>>>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
>>>>>> (default-compile) on project airavata-client-api: Compilation failure:
>>>>>> Compilation failure:
>>>>>> [ERROR]
>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>> tools/DocumentCreatorNew.java:[28,31]
>>>>>> package org.apache.airavata.api does not exist
>>>>>> [ERROR]
>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>> tools/DocumentCreatorNew.java:[56,21]
>>>>>> package Airavata does not exist
>>>>>> [ERROR]
>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>> tools/DocumentCreatorNew.java:[59,39]
>>>>>> package Airavata does not exist
>>>>>> [ERROR]
>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>> tools/DocumentCreatorNew.java:[28,31]
>>>>>> package org.apache.airavata.api does not exist
>>>>>> [ERROR]
>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>> tools/DocumentCreatorNew.java:[56,21]
>>>>>> package Airavata does not exist
>>>>>> [ERROR]
>>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>>> tools/DocumentCreatorNew.java:[59,39]
>>>>>> package Airavata does not exist
>>>>>> [ERROR] -> [Help 1]
>>>>>> [ERROR]
>>>>>> [ERROR] To see the full stack trace of the errors, re-run Maven with
>>>>>> the -e
>>>>>> switch.
>>>>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
>>>>>> [ERROR]
>>>>>> [ERROR] For more information about the errors and possible solutions,
>>>>>> please read the following articles:
>>>>>> [ERROR] [Help 1]
>>>>>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
>>>>>> [ERROR]
>>>>>> [ERROR] After correcting the problems, you can resume the build with
>>>>>> the
>>>>>> command
>>>>>> [ERROR] mvn <goals> -rf :airavata-client-api
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <glahiru@gmail.com
>>>>>> >
>>>>>> wrote:
>>>>>>
>>>>>> Hi Saminda,
>>>>>>>
>>>>>>> I got more updates just now. I will build again and see.
>>>>>>>
>>>>>>> Thanks
>>>>>>> Lahiru
>>>>>>>
>>>>>>>
>>>>>>> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <
>>>>>>> samindaw@gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>> hmm... I thought I fixed this issue yesterday. Do you have the
>>>>>>>> latest
>>>>>>>> trunk?
>>>>>>>>
>>>>>>>>
>>>>>>>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <
>>>>>>>> glahiru@gmail.com>
>>>>>>>> wrote:
>>>>>>>>
>>>>>>>> [ERROR] Error occurred while executing : /* * * Licensed to the
>>>>>>>>> Apache
>>>>>>>>> Software Foundation (ASF) under one * or more contributor license
>>>>>>>>> agreements. See the NOTICE file * distributed with this work for
>>>>>>>>> additional information * regarding copyright ownership. The ASF
>>>>>>>>> licenses
>>>>>>>>> this file * to you under the Apache License, Version 2.0 (the *
>>>>>>>>> "License");
>>>>>>>>> you may not use this file except in compliance * with the License.
>>>>>>>>> You may
>>>>>>>>> obtain a copy of the License at * *
>>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>>> under the
>>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>>>> License for
>>>>>>>>> the * specific language governing permissions and limitations *
>>>>>>>>> under the
>>>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>>> VARCHAR(255),
>>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>>> java.lang.Exception: Error occurred while executing : /* * *
>>>>>>>>> Licensed
>>>>>>>>> to the Apache Software Foundation (ASF) under one * or more
>>>>>>>>> contributor
>>>>>>>>> license agreements. See the NOTICE file * distributed with this
>>>>>>>>> work for
>>>>>>>>> additional information * regarding copyright ownership. The ASF
>>>>>>>>> licenses
>>>>>>>>> this file * to you under the Apache License, Version 2.0 (the *
>>>>>>>>> "License");
>>>>>>>>> you may not use this file except in compliance * with the License.
>>>>>>>>> You may
>>>>>>>>> obtain a copy of the License at * *
>>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>>> under the
>>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>>>> License for
>>>>>>>>> the * specific language governing permissions and limitations *
>>>>>>>>> under the
>>>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>>> VARCHAR(255),
>>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> createDatabase(DatabaseCreator.java:234)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>>> initializeDB(AppCatalogInitUtil.java:80)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>>>> ServerMain.java:266)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>>>> ServerMain.java:121)
>>>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at
>>>>>>>>> line 1,
>>>>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>>>> getSQLException(Unknown
>>>>>>>>> Source)
>>>>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(
>>>>>>>>> Unknown
>>>>>>>>> Source)
>>>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>>>> ... 9 more
>>>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error
>>>>>>>>> at
>>>>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>> parsePrepareError(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.NetStatement.
>>>>>>>>> readPrepareDescribeOutput_(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>>>> Unknown
>>>>>>>>> Source)
>>>>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>>>> Source)
>>>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>>>> ... 11 more
>>>>>>>>> [ERROR] Server Start Error:
>>>>>>>>> java.lang.RuntimeException: Database failure
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>>> initializeDB(AppCatalogInitUtil.java:87)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>>>> ServerMain.java:266)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>>>> ServerMain.java:121)
>>>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.
>>>>>>>>> java:113)
>>>>>>>>> Caused by: java.lang.Exception: Error occurred while executing :
>>>>>>>>> /* * *
>>>>>>>>> Licensed to the Apache Software Foundation (ASF) under one * or
>>>>>>>>> more
>>>>>>>>> contributor license agreements. See the NOTICE file * distributed
>>>>>>>>> with
>>>>>>>>> this work for additional information * regarding copyright
>>>>>>>>> ownership. The
>>>>>>>>> ASF licenses this file * to you under the Apache License, Version
>>>>>>>>> 2.0 (the
>>>>>>>>> * "License"); you may not use this file except in compliance *
>>>>>>>>> with the
>>>>>>>>> License. You may obtain a copy of the License at * *
>>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>>> under the
>>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>>>> License for
>>>>>>>>> the * specific language governing permissions and limitations *
>>>>>>>>> under the
>>>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>>> VARCHAR(255),
>>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> createDatabase(DatabaseCreator.java:234)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>>> initializeDB(AppCatalogInitUtil.java:80)
>>>>>>>>> ... 5 more
>>>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at
>>>>>>>>> line 1,
>>>>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>>>> getSQLException(Unknown
>>>>>>>>> Source)
>>>>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(
>>>>>>>>> Unknown
>>>>>>>>> Source)
>>>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>>> at
>>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>>>> ... 9 more
>>>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error
>>>>>>>>> at
>>>>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>> parsePrepareError(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.net.NetStatement.
>>>>>>>>> readPrepareDescribeOutput_(Unknown
>>>>>>>>> Source)
>>>>>>>>> at
>>>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>>>> Unknown
>>>>>>>>> Source)
>>>>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>>>> Source)
>>>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>>>> ... 11 more
>>>>>>>>> [INFO] Initiating client connection, con
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> System Analyst Programmer
>>>>>>>>> PTI Lab
>>>>>>>>> Indiana University
>>>>>>>>>
>>>>>>>>> --
>>>>>>> System Analyst Programmer
>>>>>>> PTI Lab
>>>>>>> Indiana University
>>>>>>>
>>>>>>>
>>>>>>
>>>
>>
>>
>> --
>> System Analyst Programmer
>> PTI Lab
>> Indiana University
>>
>
>
--
System Analyst Programmer
PTI Lab
Indiana University
Re: Error during start up of Airavata
Posted by Chathuri Wimalasena <ka...@gmail.com>.
Hi Lahiru,
There is no separate app-catalog server now. App-catalog database will
start when airavata server starts. All the app-catalog API methods will be
at the same airavata-api.
On Mon, Jul 7, 2014 at 10:14 AM, Lahiru Gunathilake <gl...@gmail.com>
wrote:
> Hi Saminda,
>
> Is there any sample that I can test a simple scenario ? Now I can build
> but I can see app-catalog server is not starting because its disabled in
> airavata-server.properties.
>
> Please let me know when its ready.
>
> Lahiru
>
>
> On Mon, Jul 7, 2014 at 9:33 AM, Marlon Pierce <ma...@iu.edu> wrote:
>
>> git pull updated a pom.xml, This time I got to the end but failed on
>> "Airavata release artifacts". It looks like there are more commits after I
>> started the build, so I'll be patient.
>>
>> Marlon
>>
>>
>> On 7/7/14, 9:25 AM, Suresh Marru wrote:
>>
>>> Looks like a missing dependency. Can u take a pull and retry?
>>>
>>> Suresh
>>>
>>> On Jul 7, 2014, at 9:19 AM, Marlon Pierce <ma...@iu.edu> wrote:
>>>
>>> Same problems for me.
>>>>
>>>> On 7/7/14, 9:08 AM, Lahiru Gunathilake wrote:
>>>>
>>>>> I get this error during building,
>>>>>
>>>>> [ERROR] Failed to execute goal
>>>>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
>>>>> (default-compile) on project airavata-client-api: Compilation failure:
>>>>> Compilation failure:
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[28,31]
>>>>> package org.apache.airavata.api does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[56,21]
>>>>> package Airavata does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[59,39]
>>>>> package Airavata does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[28,31]
>>>>> package org.apache.airavata.api does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[56,21]
>>>>> package Airavata does not exist
>>>>> [ERROR]
>>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>>> tools/DocumentCreatorNew.java:[59,39]
>>>>> package Airavata does not exist
>>>>> [ERROR] -> [Help 1]
>>>>> [ERROR]
>>>>> [ERROR] To see the full stack trace of the errors, re-run Maven with
>>>>> the -e
>>>>> switch.
>>>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
>>>>> [ERROR]
>>>>> [ERROR] For more information about the errors and possible solutions,
>>>>> please read the following articles:
>>>>> [ERROR] [Help 1]
>>>>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
>>>>> [ERROR]
>>>>> [ERROR] After correcting the problems, you can resume the build with
>>>>> the
>>>>> command
>>>>> [ERROR] mvn <goals> -rf :airavata-client-api
>>>>>
>>>>>
>>>>>
>>>>> On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <gl...@gmail.com>
>>>>> wrote:
>>>>>
>>>>> Hi Saminda,
>>>>>>
>>>>>> I got more updates just now. I will build again and see.
>>>>>>
>>>>>> Thanks
>>>>>> Lahiru
>>>>>>
>>>>>>
>>>>>> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <samindaw@gmail.com
>>>>>> >
>>>>>> wrote:
>>>>>>
>>>>>> hmm... I thought I fixed this issue yesterday. Do you have the latest
>>>>>>> trunk?
>>>>>>>
>>>>>>>
>>>>>>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <
>>>>>>> glahiru@gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>> [ERROR] Error occurred while executing : /* * * Licensed to the
>>>>>>>> Apache
>>>>>>>> Software Foundation (ASF) under one * or more contributor license
>>>>>>>> agreements. See the NOTICE file * distributed with this work for
>>>>>>>> additional information * regarding copyright ownership. The ASF
>>>>>>>> licenses
>>>>>>>> this file * to you under the Apache License, Version 2.0 (the *
>>>>>>>> "License");
>>>>>>>> you may not use this file except in compliance * with the License.
>>>>>>>> You may
>>>>>>>> obtain a copy of the License at * *
>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>> under the
>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>>> License for
>>>>>>>> the * specific language governing permissions and limitations *
>>>>>>>> under the
>>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>> VARCHAR(255),
>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>> java.lang.Exception: Error occurred while executing : /* * *
>>>>>>>> Licensed
>>>>>>>> to the Apache Software Foundation (ASF) under one * or more
>>>>>>>> contributor
>>>>>>>> license agreements. See the NOTICE file * distributed with this
>>>>>>>> work for
>>>>>>>> additional information * regarding copyright ownership. The ASF
>>>>>>>> licenses
>>>>>>>> this file * to you under the Apache License, Version 2.0 (the *
>>>>>>>> "License");
>>>>>>>> you may not use this file except in compliance * with the License.
>>>>>>>> You may
>>>>>>>> obtain a copy of the License at * *
>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>> under the
>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>>> License for
>>>>>>>> the * specific language governing permissions and limitations *
>>>>>>>> under the
>>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>> VARCHAR(255),
>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(
>>>>>>>> DatabaseCreator.java:234)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>> initializeDB(AppCatalogInitUtil.java:80)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>>> at
>>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>>> ServerMain.java:266)
>>>>>>>> at
>>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>>> ServerMain.java:121)
>>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line
>>>>>>>> 1,
>>>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>>>> at
>>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>>> getSQLException(Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(
>>>>>>>> Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>>> ... 9 more
>>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error
>>>>>>>> at
>>>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> parsePrepareError(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatement.
>>>>>>>> readPrepareDescribeOutput_(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>>> Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>>> ... 11 more
>>>>>>>> [ERROR] Server Start Error:
>>>>>>>> java.lang.RuntimeException: Database failure
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>> initializeDB(AppCatalogInitUtil.java:87)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>>> at
>>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>>> ServerMain.java:266)
>>>>>>>> at
>>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>>> ServerMain.java:121)
>>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.
>>>>>>>> java:113)
>>>>>>>> Caused by: java.lang.Exception: Error occurred while executing :
>>>>>>>> /* * *
>>>>>>>> Licensed to the Apache Software Foundation (ASF) under one * or more
>>>>>>>> contributor license agreements. See the NOTICE file * distributed
>>>>>>>> with
>>>>>>>> this work for additional information * regarding copyright
>>>>>>>> ownership. The
>>>>>>>> ASF licenses this file * to you under the Apache License, Version
>>>>>>>> 2.0 (the
>>>>>>>> * "License"); you may not use this file except in compliance * with
>>>>>>>> the
>>>>>>>> License. You may obtain a copy of the License at * *
>>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>>> applicable law or agreed to in writing, * software distributed
>>>>>>>> under the
>>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>>> License for
>>>>>>>> the * specific language governing permissions and limitations *
>>>>>>>> under the
>>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>>> VARCHAR(255),
>>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>>> KEY(RESOURCE_ID) )
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(
>>>>>>>> DatabaseCreator.java:234)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.
>>>>>>>> initializeDB(AppCatalogInitUtil.java:80)
>>>>>>>> ... 5 more
>>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line
>>>>>>>> 1,
>>>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>>>> at
>>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>>> getSQLException(Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(
>>>>>>>> Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>>> at
>>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>>> ... 9 more
>>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error
>>>>>>>> at
>>>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> parsePrepareError(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.net.NetStatement.
>>>>>>>> readPrepareDescribeOutput_(Unknown
>>>>>>>> Source)
>>>>>>>> at
>>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>>> Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>>> Source)
>>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>>> ... 11 more
>>>>>>>> [INFO] Initiating client connection, con
>>>>>>>>
>>>>>>>> --
>>>>>>>> System Analyst Programmer
>>>>>>>> PTI Lab
>>>>>>>> Indiana University
>>>>>>>>
>>>>>>>> --
>>>>>> System Analyst Programmer
>>>>>> PTI Lab
>>>>>> Indiana University
>>>>>>
>>>>>>
>>>>>
>>
>
>
> --
> System Analyst Programmer
> PTI Lab
> Indiana University
>
Re: Error during start up of Airavata
Posted by Lahiru Gunathilake <gl...@gmail.com>.
Hi Saminda,
Is there any sample that I can test a simple scenario ? Now I can build but
I can see app-catalog server is not starting because its disabled in
airavata-server.properties.
Please let me know when its ready.
Lahiru
On Mon, Jul 7, 2014 at 9:33 AM, Marlon Pierce <ma...@iu.edu> wrote:
> git pull updated a pom.xml, This time I got to the end but failed on
> "Airavata release artifacts". It looks like there are more commits after I
> started the build, so I'll be patient.
>
> Marlon
>
>
> On 7/7/14, 9:25 AM, Suresh Marru wrote:
>
>> Looks like a missing dependency. Can u take a pull and retry?
>>
>> Suresh
>>
>> On Jul 7, 2014, at 9:19 AM, Marlon Pierce <ma...@iu.edu> wrote:
>>
>> Same problems for me.
>>>
>>> On 7/7/14, 9:08 AM, Lahiru Gunathilake wrote:
>>>
>>>> I get this error during building,
>>>>
>>>> [ERROR] Failed to execute goal
>>>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
>>>> (default-compile) on project airavata-client-api: Compilation failure:
>>>> Compilation failure:
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[28,31]
>>>> package org.apache.airavata.api does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[56,21]
>>>> package Airavata does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[59,39]
>>>> package Airavata does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[28,31]
>>>> package org.apache.airavata.api does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[56,21]
>>>> package Airavata does not exist
>>>> [ERROR]
>>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/
>>>> airavata-client/src/main/java/org/apache/airavata/client/
>>>> tools/DocumentCreatorNew.java:[59,39]
>>>> package Airavata does not exist
>>>> [ERROR] -> [Help 1]
>>>> [ERROR]
>>>> [ERROR] To see the full stack trace of the errors, re-run Maven with
>>>> the -e
>>>> switch.
>>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
>>>> [ERROR]
>>>> [ERROR] For more information about the errors and possible solutions,
>>>> please read the following articles:
>>>> [ERROR] [Help 1]
>>>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
>>>> [ERROR]
>>>> [ERROR] After correcting the problems, you can resume the build with the
>>>> command
>>>> [ERROR] mvn <goals> -rf :airavata-client-api
>>>>
>>>>
>>>>
>>>> On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <gl...@gmail.com>
>>>> wrote:
>>>>
>>>> Hi Saminda,
>>>>>
>>>>> I got more updates just now. I will build again and see.
>>>>>
>>>>> Thanks
>>>>> Lahiru
>>>>>
>>>>>
>>>>> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <sa...@gmail.com>
>>>>> wrote:
>>>>>
>>>>> hmm... I thought I fixed this issue yesterday. Do you have the latest
>>>>>> trunk?
>>>>>>
>>>>>>
>>>>>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <glahiru@gmail.com
>>>>>> >
>>>>>> wrote:
>>>>>>
>>>>>> [ERROR] Error occurred while executing : /* * * Licensed to the
>>>>>>> Apache
>>>>>>> Software Foundation (ASF) under one * or more contributor license
>>>>>>> agreements. See the NOTICE file * distributed with this work for
>>>>>>> additional information * regarding copyright ownership. The ASF
>>>>>>> licenses
>>>>>>> this file * to you under the Apache License, Version 2.0 (the *
>>>>>>> "License");
>>>>>>> you may not use this file except in compliance * with the License.
>>>>>>> You may
>>>>>>> obtain a copy of the License at * *
>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>> applicable law or agreed to in writing, * software distributed under
>>>>>>> the
>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>> License for
>>>>>>> the * specific language governing permissions and limitations *
>>>>>>> under the
>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>> VARCHAR(255),
>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>> KEY(RESOURCE_ID) )
>>>>>>> java.lang.Exception: Error occurred while executing : /* * *
>>>>>>> Licensed
>>>>>>> to the Apache Software Foundation (ASF) under one * or more
>>>>>>> contributor
>>>>>>> license agreements. See the NOTICE file * distributed with this
>>>>>>> work for
>>>>>>> additional information * regarding copyright ownership. The ASF
>>>>>>> licenses
>>>>>>> this file * to you under the Apache License, Version 2.0 (the *
>>>>>>> "License");
>>>>>>> you may not use this file except in compliance * with the License.
>>>>>>> You may
>>>>>>> obtain a copy of the License at * *
>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>> applicable law or agreed to in writing, * software distributed under
>>>>>>> the
>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>> License for
>>>>>>> the * specific language governing permissions and limitations *
>>>>>>> under the
>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>> VARCHAR(255),
>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>> KEY(RESOURCE_ID) )
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(
>>>>>>> DatabaseCreator.java:234)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(
>>>>>>> AppCatalogInitUtil.java:80)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>> at
>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>> ServerMain.java:266)
>>>>>>> at
>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>> ServerMain.java:121)
>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line
>>>>>>> 1,
>>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>>> at
>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>> getSQLException(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>> ... 9 more
>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> parsePrepareError(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(
>>>>>>> Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>> Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>> ... 11 more
>>>>>>> [ERROR] Server Start Error:
>>>>>>> java.lang.RuntimeException: Database failure
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(
>>>>>>> AppCatalogInitUtil.java:87)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>> StartAiravataServer(AiravataAPIServer.java:63)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.AiravataAPIServer.
>>>>>>> start(AiravataAPIServer.java:125)
>>>>>>> at
>>>>>>> org.apache.airavata.server.ServerMain.startAllServers(
>>>>>>> ServerMain.java:266)
>>>>>>> at
>>>>>>> org.apache.airavata.server.ServerMain.performServerStart(
>>>>>>> ServerMain.java:121)
>>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>>>> Caused by: java.lang.Exception: Error occurred while executing : /*
>>>>>>> * *
>>>>>>> Licensed to the Apache Software Foundation (ASF) under one * or more
>>>>>>> contributor license agreements. See the NOTICE file * distributed
>>>>>>> with
>>>>>>> this work for additional information * regarding copyright
>>>>>>> ownership. The
>>>>>>> ASF licenses this file * to you under the Apache License, Version
>>>>>>> 2.0 (the
>>>>>>> * "License"); you may not use this file except in compliance * with
>>>>>>> the
>>>>>>> License. You may obtain a copy of the License at * *
>>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>>> applicable law or agreed to in writing, * software distributed under
>>>>>>> the
>>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the
>>>>>>> License for
>>>>>>> the * specific language governing permissions and limitations *
>>>>>>> under the
>>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID
>>>>>>> VARCHAR(255),
>>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY
>>>>>>> KEY(RESOURCE_ID) )
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQL(DatabaseCreator.java:150)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQLScript(DatabaseCreator.java:286)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(
>>>>>>> DatabaseCreator.java:234)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> createRegistryDatabase(DatabaseCreator.java:62)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(
>>>>>>> AppCatalogInitUtil.java:80)
>>>>>>> ... 5 more
>>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line
>>>>>>> 1,
>>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>>> at
>>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.
>>>>>>> getSQLException(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>>> at
>>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.
>>>>>>> executeSQL(DatabaseCreator.java:122)
>>>>>>> ... 9 more
>>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> parsePrepareError(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> parsePRPSQLSTTreply(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatementReply.
>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.StatementReply.
>>>>>>> readPrepareDescribeOutput(Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(
>>>>>>> Unknown
>>>>>>> Source)
>>>>>>> at
>>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(
>>>>>>> Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown
>>>>>>> Source)
>>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>>> ... 11 more
>>>>>>> [INFO] Initiating client connection, con
>>>>>>>
>>>>>>> --
>>>>>>> System Analyst Programmer
>>>>>>> PTI Lab
>>>>>>> Indiana University
>>>>>>>
>>>>>>> --
>>>>> System Analyst Programmer
>>>>> PTI Lab
>>>>> Indiana University
>>>>>
>>>>>
>>>>
>
--
System Analyst Programmer
PTI Lab
Indiana University
Re: Error during start up of Airavata
Posted by Marlon Pierce <ma...@iu.edu>.
git pull updated a pom.xml, This time I got to the end but failed on
"Airavata release artifacts". It looks like there are more commits
after I started the build, so I'll be patient.
Marlon
On 7/7/14, 9:25 AM, Suresh Marru wrote:
> Looks like a missing dependency. Can u take a pull and retry?
>
> Suresh
>
> On Jul 7, 2014, at 9:19 AM, Marlon Pierce <ma...@iu.edu> wrote:
>
>> Same problems for me.
>>
>> On 7/7/14, 9:08 AM, Lahiru Gunathilake wrote:
>>> I get this error during building,
>>>
>>> [ERROR] Failed to execute goal
>>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
>>> (default-compile) on project airavata-client-api: Compilation failure:
>>> Compilation failure:
>>> [ERROR]
>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[28,31]
>>> package org.apache.airavata.api does not exist
>>> [ERROR]
>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[56,21]
>>> package Airavata does not exist
>>> [ERROR]
>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[59,39]
>>> package Airavata does not exist
>>> [ERROR]
>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[28,31]
>>> package org.apache.airavata.api does not exist
>>> [ERROR]
>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[56,21]
>>> package Airavata does not exist
>>> [ERROR]
>>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[59,39]
>>> package Airavata does not exist
>>> [ERROR] -> [Help 1]
>>> [ERROR]
>>> [ERROR] To see the full stack trace of the errors, re-run Maven with the -e
>>> switch.
>>> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
>>> [ERROR]
>>> [ERROR] For more information about the errors and possible solutions,
>>> please read the following articles:
>>> [ERROR] [Help 1]
>>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
>>> [ERROR]
>>> [ERROR] After correcting the problems, you can resume the build with the
>>> command
>>> [ERROR] mvn <goals> -rf :airavata-client-api
>>>
>>>
>>>
>>> On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <gl...@gmail.com>
>>> wrote:
>>>
>>>> Hi Saminda,
>>>>
>>>> I got more updates just now. I will build again and see.
>>>>
>>>> Thanks
>>>> Lahiru
>>>>
>>>>
>>>> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <sa...@gmail.com>
>>>> wrote:
>>>>
>>>>> hmm... I thought I fixed this issue yesterday. Do you have the latest
>>>>> trunk?
>>>>>
>>>>>
>>>>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <gl...@gmail.com>
>>>>> wrote:
>>>>>
>>>>>> [ERROR] Error occurred while executing : /* * * Licensed to the Apache
>>>>>> Software Foundation (ASF) under one * or more contributor license
>>>>>> agreements. See the NOTICE file * distributed with this work for
>>>>>> additional information * regarding copyright ownership. The ASF licenses
>>>>>> this file * to you under the Apache License, Version 2.0 (the * "License");
>>>>>> you may not use this file except in compliance * with the License. You may
>>>>>> obtain a copy of the License at * *
>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>> applicable law or agreed to in writing, * software distributed under the
>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>>>>> the * specific language governing permissions and limitations * under the
>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>>>>> java.lang.Exception: Error occurred while executing : /* * * Licensed
>>>>>> to the Apache Software Foundation (ASF) under one * or more contributor
>>>>>> license agreements. See the NOTICE file * distributed with this work for
>>>>>> additional information * regarding copyright ownership. The ASF licenses
>>>>>> this file * to you under the Apache License, Version 2.0 (the * "License");
>>>>>> you may not use this file except in compliance * with the License. You may
>>>>>> obtain a copy of the License at * *
>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>> applicable law or agreed to in writing, * software distributed under the
>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>>>>> the * specific language governing permissions and limitations * under the
>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>>>>>> at
>>>>>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>>>>>> at
>>>>>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>>>>>> at
>>>>>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>>>>>> at
>>>>>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>> at
>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>>>>> Source)
>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>>>> Source)
>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>>>>>> ... 9 more
>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>>>>>> Source)
>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>> ... 11 more
>>>>>> [ERROR] Server Start Error:
>>>>>> java.lang.RuntimeException: Database failure
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:87)
>>>>>> at
>>>>>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>>>>>> at
>>>>>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>>>>>> at
>>>>>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>>>>>> at
>>>>>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>>> Caused by: java.lang.Exception: Error occurred while executing : /* * *
>>>>>> Licensed to the Apache Software Foundation (ASF) under one * or more
>>>>>> contributor license agreements. See the NOTICE file * distributed with
>>>>>> this work for additional information * regarding copyright ownership. The
>>>>>> ASF licenses this file * to you under the Apache License, Version 2.0 (the
>>>>>> * "License"); you may not use this file except in compliance * with the
>>>>>> License. You may obtain a copy of the License at * *
>>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>>> applicable law or agreed to in writing, * software distributed under the
>>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>>>>> the * specific language governing permissions and limitations * under the
>>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>>>>>> ... 5 more
>>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>>>>>> column 982. Encountered: <EOF> after : "".
>>>>>> at
>>>>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>>>>> Source)
>>>>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>>>> Source)
>>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>>> at
>>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>>>>>> ... 9 more
>>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>>>>>> Source)
>>>>>> at
>>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>>>>>> Source)
>>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>>> ... 11 more
>>>>>> [INFO] Initiating client connection, con
>>>>>>
>>>>>> --
>>>>>> System Analyst Programmer
>>>>>> PTI Lab
>>>>>> Indiana University
>>>>>>
>>>> --
>>>> System Analyst Programmer
>>>> PTI Lab
>>>> Indiana University
>>>>
>>>
Re: Error during start up of Airavata
Posted by Suresh Marru <sm...@apache.org>.
Looks like a missing dependency. Can u take a pull and retry?
Suresh
On Jul 7, 2014, at 9:19 AM, Marlon Pierce <ma...@iu.edu> wrote:
> Same problems for me.
>
> On 7/7/14, 9:08 AM, Lahiru Gunathilake wrote:
>> I get this error during building,
>>
>> [ERROR] Failed to execute goal
>> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
>> (default-compile) on project airavata-client-api: Compilation failure:
>> Compilation failure:
>> [ERROR]
>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[28,31]
>> package org.apache.airavata.api does not exist
>> [ERROR]
>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[56,21]
>> package Airavata does not exist
>> [ERROR]
>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[59,39]
>> package Airavata does not exist
>> [ERROR]
>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[28,31]
>> package org.apache.airavata.api does not exist
>> [ERROR]
>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[56,21]
>> package Airavata does not exist
>> [ERROR]
>> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[59,39]
>> package Airavata does not exist
>> [ERROR] -> [Help 1]
>> [ERROR]
>> [ERROR] To see the full stack trace of the errors, re-run Maven with the -e
>> switch.
>> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
>> [ERROR]
>> [ERROR] For more information about the errors and possible solutions,
>> please read the following articles:
>> [ERROR] [Help 1]
>> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
>> [ERROR]
>> [ERROR] After correcting the problems, you can resume the build with the
>> command
>> [ERROR] mvn <goals> -rf :airavata-client-api
>>
>>
>>
>> On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <gl...@gmail.com>
>> wrote:
>>
>>> Hi Saminda,
>>>
>>> I got more updates just now. I will build again and see.
>>>
>>> Thanks
>>> Lahiru
>>>
>>>
>>> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <sa...@gmail.com>
>>> wrote:
>>>
>>>> hmm... I thought I fixed this issue yesterday. Do you have the latest
>>>> trunk?
>>>>
>>>>
>>>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <gl...@gmail.com>
>>>> wrote:
>>>>
>>>>> [ERROR] Error occurred while executing : /* * * Licensed to the Apache
>>>>> Software Foundation (ASF) under one * or more contributor license
>>>>> agreements. See the NOTICE file * distributed with this work for
>>>>> additional information * regarding copyright ownership. The ASF licenses
>>>>> this file * to you under the Apache License, Version 2.0 (the * "License");
>>>>> you may not use this file except in compliance * with the License. You may
>>>>> obtain a copy of the License at * *
>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>> applicable law or agreed to in writing, * software distributed under the
>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>>>> the * specific language governing permissions and limitations * under the
>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>>>> java.lang.Exception: Error occurred while executing : /* * * Licensed
>>>>> to the Apache Software Foundation (ASF) under one * or more contributor
>>>>> license agreements. See the NOTICE file * distributed with this work for
>>>>> additional information * regarding copyright ownership. The ASF licenses
>>>>> this file * to you under the Apache License, Version 2.0 (the * "License");
>>>>> you may not use this file except in compliance * with the License. You may
>>>>> obtain a copy of the License at * *
>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>> applicable law or agreed to in writing, * software distributed under the
>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>>>> the * specific language governing permissions and limitations * under the
>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>>>>> at
>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>>>>> at
>>>>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>>>>> at
>>>>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>>>>> at
>>>>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>>>>> at
>>>>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>>>>> column 982. Encountered: <EOF> after : "".
>>>>> at
>>>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>>>> Source)
>>>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>>> Source)
>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>>>>> ... 9 more
>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>>>>> at
>>>>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>>>>> Source)
>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>> ... 11 more
>>>>> [ERROR] Server Start Error:
>>>>> java.lang.RuntimeException: Database failure
>>>>> at
>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:87)
>>>>> at
>>>>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>>>>> at
>>>>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>>>>> at
>>>>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>>>>> at
>>>>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>>> Caused by: java.lang.Exception: Error occurred while executing : /* * *
>>>>> Licensed to the Apache Software Foundation (ASF) under one * or more
>>>>> contributor license agreements. See the NOTICE file * distributed with
>>>>> this work for additional information * regarding copyright ownership. The
>>>>> ASF licenses this file * to you under the Apache License, Version 2.0 (the
>>>>> * "License"); you may not use this file except in compliance * with the
>>>>> License. You may obtain a copy of the License at * *
>>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>>> applicable law or agreed to in writing, * software distributed under the
>>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>>>> the * specific language governing permissions and limitations * under the
>>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>>>>> at
>>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>>>>> ... 5 more
>>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>>>>> column 982. Encountered: <EOF> after : "".
>>>>> at
>>>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>>>> Source)
>>>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>>> Source)
>>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>>> at
>>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>>>>> ... 9 more
>>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>>>>> at
>>>>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>>>>> Source)
>>>>> at
>>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>>>>> Source)
>>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>>> ... 11 more
>>>>> [INFO] Initiating client connection, con
>>>>>
>>>>> --
>>>>> System Analyst Programmer
>>>>> PTI Lab
>>>>> Indiana University
>>>>>
>>>>
>>>
>>> --
>>> System Analyst Programmer
>>> PTI Lab
>>> Indiana University
>>>
>>
>>
>
Re: Error during start up of Airavata
Posted by Marlon Pierce <ma...@iu.edu>.
Same problems for me.
On 7/7/14, 9:08 AM, Lahiru Gunathilake wrote:
> I get this error during building,
>
> [ERROR] Failed to execute goal
> org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
> (default-compile) on project airavata-client-api: Compilation failure:
> Compilation failure:
> [ERROR]
> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[28,31]
> package org.apache.airavata.api does not exist
> [ERROR]
> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[56,21]
> package Airavata does not exist
> [ERROR]
> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[59,39]
> package Airavata does not exist
> [ERROR]
> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[28,31]
> package org.apache.airavata.api does not exist
> [ERROR]
> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[56,21]
> package Airavata does not exist
> [ERROR]
> /Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[59,39]
> package Airavata does not exist
> [ERROR] -> [Help 1]
> [ERROR]
> [ERROR] To see the full stack trace of the errors, re-run Maven with the -e
> switch.
> [ERROR] Re-run Maven using the -X switch to enable full debug logging.
> [ERROR]
> [ERROR] For more information about the errors and possible solutions,
> please read the following articles:
> [ERROR] [Help 1]
> http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
> [ERROR]
> [ERROR] After correcting the problems, you can resume the build with the
> command
> [ERROR] mvn <goals> -rf :airavata-client-api
>
>
>
> On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <gl...@gmail.com>
> wrote:
>
>> Hi Saminda,
>>
>> I got more updates just now. I will build again and see.
>>
>> Thanks
>> Lahiru
>>
>>
>> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <sa...@gmail.com>
>> wrote:
>>
>>> hmm... I thought I fixed this issue yesterday. Do you have the latest
>>> trunk?
>>>
>>>
>>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <gl...@gmail.com>
>>> wrote:
>>>
>>>> [ERROR] Error occurred while executing : /* * * Licensed to the Apache
>>>> Software Foundation (ASF) under one * or more contributor license
>>>> agreements. See the NOTICE file * distributed with this work for
>>>> additional information * regarding copyright ownership. The ASF licenses
>>>> this file * to you under the Apache License, Version 2.0 (the * "License");
>>>> you may not use this file except in compliance * with the License. You may
>>>> obtain a copy of the License at * *
>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>> applicable law or agreed to in writing, * software distributed under the
>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>>> the * specific language governing permissions and limitations * under the
>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>>> java.lang.Exception: Error occurred while executing : /* * * Licensed
>>>> to the Apache Software Foundation (ASF) under one * or more contributor
>>>> license agreements. See the NOTICE file * distributed with this work for
>>>> additional information * regarding copyright ownership. The ASF licenses
>>>> this file * to you under the Apache License, Version 2.0 (the * "License");
>>>> you may not use this file except in compliance * with the License. You may
>>>> obtain a copy of the License at * *
>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>> applicable law or agreed to in writing, * software distributed under the
>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>>> the * specific language governing permissions and limitations * under the
>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>>>> at
>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>>>> at
>>>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>>>> at
>>>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>>>> at
>>>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>>>> at
>>>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>>>> column 982. Encountered: <EOF> after : "".
>>>> at
>>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>>> Source)
>>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>> Source)
>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>>>> ... 9 more
>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>>>> at
>>>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>>>> Source)
>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>> ... 11 more
>>>> [ERROR] Server Start Error:
>>>> java.lang.RuntimeException: Database failure
>>>> at
>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:87)
>>>> at
>>>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>>>> at
>>>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>>>> at
>>>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>>>> at
>>>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>>> Caused by: java.lang.Exception: Error occurred while executing : /* * *
>>>> Licensed to the Apache Software Foundation (ASF) under one * or more
>>>> contributor license agreements. See the NOTICE file * distributed with
>>>> this work for additional information * regarding copyright ownership. The
>>>> ASF licenses this file * to you under the Apache License, Version 2.0 (the
>>>> * "License"); you may not use this file except in compliance * with the
>>>> License. You may obtain a copy of the License at * *
>>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>>> applicable law or agreed to in writing, * software distributed under the
>>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>>> the * specific language governing permissions and limitations * under the
>>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>>>> at
>>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>>>> ... 5 more
>>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>>>> column 982. Encountered: <EOF> after : "".
>>>> at
>>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>>> Source)
>>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>>> Source)
>>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>>> at
>>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>>>> ... 9 more
>>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>>> line 1, column 982. Encountered: <EOF> after : "".
>>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>>>> at
>>>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>>>> Source)
>>>> at
>>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>>>> Source)
>>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>>> ... 11 more
>>>> [INFO] Initiating client connection, con
>>>>
>>>> --
>>>> System Analyst Programmer
>>>> PTI Lab
>>>> Indiana University
>>>>
>>>
>>
>> --
>> System Analyst Programmer
>> PTI Lab
>> Indiana University
>>
>
>
Re: Error during start up of Airavata
Posted by Lahiru Gunathilake <gl...@gmail.com>.
I get this error during building,
[ERROR] Failed to execute goal
org.apache.maven.plugins:maven-compiler-plugin:3.1:compile
(default-compile) on project airavata-client-api: Compilation failure:
Compilation failure:
[ERROR]
/Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[28,31]
package org.apache.airavata.api does not exist
[ERROR]
/Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[56,21]
package Airavata does not exist
[ERROR]
/Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[59,39]
package Airavata does not exist
[ERROR]
/Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[28,31]
package org.apache.airavata.api does not exist
[ERROR]
/Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[56,21]
package Airavata does not exist
[ERROR]
/Users/lahirugunathilake/work/airavata/git/airavata/modules/airavata-client/src/main/java/org/apache/airavata/client/tools/DocumentCreatorNew.java:[59,39]
package Airavata does not exist
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e
switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions,
please read the following articles:
[ERROR] [Help 1]
http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the
command
[ERROR] mvn <goals> -rf :airavata-client-api
On Mon, Jul 7, 2014 at 9:04 AM, Lahiru Gunathilake <gl...@gmail.com>
wrote:
> Hi Saminda,
>
> I got more updates just now. I will build again and see.
>
> Thanks
> Lahiru
>
>
> On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <sa...@gmail.com>
> wrote:
>
>> hmm... I thought I fixed this issue yesterday. Do you have the latest
>> trunk?
>>
>>
>> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <gl...@gmail.com>
>> wrote:
>>
>>> [ERROR] Error occurred while executing : /* * * Licensed to the Apache
>>> Software Foundation (ASF) under one * or more contributor license
>>> agreements. See the NOTICE file * distributed with this work for
>>> additional information * regarding copyright ownership. The ASF licenses
>>> this file * to you under the Apache License, Version 2.0 (the * "License");
>>> you may not use this file except in compliance * with the License. You may
>>> obtain a copy of the License at * *
>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>> applicable law or agreed to in writing, * software distributed under the
>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>> the * specific language governing permissions and limitations * under the
>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>> java.lang.Exception: Error occurred while executing : /* * * Licensed
>>> to the Apache Software Foundation (ASF) under one * or more contributor
>>> license agreements. See the NOTICE file * distributed with this work for
>>> additional information * regarding copyright ownership. The ASF licenses
>>> this file * to you under the Apache License, Version 2.0 (the * "License");
>>> you may not use this file except in compliance * with the License. You may
>>> obtain a copy of the License at * *
>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>> applicable law or agreed to in writing, * software distributed under the
>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>> the * specific language governing permissions and limitations * under the
>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>>> at
>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>>> at
>>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>>> at
>>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>>> at
>>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>>> at
>>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>>> column 982. Encountered: <EOF> after : "".
>>> at
>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>> Source)
>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>> Source)
>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>>> ... 9 more
>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>> line 1, column 982. Encountered: <EOF> after : "".
>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>>> at
>>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>>> Source)
>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>> ... 11 more
>>> [ERROR] Server Start Error:
>>> java.lang.RuntimeException: Database failure
>>> at
>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:87)
>>> at
>>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>>> at
>>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>>> at
>>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>>> at
>>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>>> Caused by: java.lang.Exception: Error occurred while executing : /* * *
>>> Licensed to the Apache Software Foundation (ASF) under one * or more
>>> contributor license agreements. See the NOTICE file * distributed with
>>> this work for additional information * regarding copyright ownership. The
>>> ASF licenses this file * to you under the Apache License, Version 2.0 (the
>>> * "License"); you may not use this file except in compliance * with the
>>> License. You may obtain a copy of the License at * *
>>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>>> applicable law or agreed to in writing, * software distributed under the
>>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>>> the * specific language governing permissions and limitations * under the
>>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>>> at
>>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>>> ... 5 more
>>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>>> column 982. Encountered: <EOF> after : "".
>>> at
>>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>>> Source)
>>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>>> Source)
>>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>>> at
>>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>>> ... 9 more
>>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at
>>> line 1, column 982. Encountered: <EOF> after : "".
>>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>>> at
>>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>>> Source)
>>> at
>>> org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>>> Source)
>>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>>> ... 11 more
>>> [INFO] Initiating client connection, con
>>>
>>> --
>>> System Analyst Programmer
>>> PTI Lab
>>> Indiana University
>>>
>>
>>
>
>
> --
> System Analyst Programmer
> PTI Lab
> Indiana University
>
--
System Analyst Programmer
PTI Lab
Indiana University
Re: Error during start up of Airavata
Posted by Lahiru Gunathilake <gl...@gmail.com>.
Hi Saminda,
I got more updates just now. I will build again and see.
Thanks
Lahiru
On Mon, Jul 7, 2014 at 8:45 AM, Saminda Wijeratne <sa...@gmail.com>
wrote:
> hmm... I thought I fixed this issue yesterday. Do you have the latest
> trunk?
>
>
> On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <gl...@gmail.com>
> wrote:
>
>> [ERROR] Error occurred while executing : /* * * Licensed to the Apache
>> Software Foundation (ASF) under one * or more contributor license
>> agreements. See the NOTICE file * distributed with this work for
>> additional information * regarding copyright ownership. The ASF licenses
>> this file * to you under the Apache License, Version 2.0 (the * "License");
>> you may not use this file except in compliance * with the License. You may
>> obtain a copy of the License at * *
>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>> applicable law or agreed to in writing, * software distributed under the
>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>> the * specific language governing permissions and limitations * under the
>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>> java.lang.Exception: Error occurred while executing : /* * * Licensed to
>> the Apache Software Foundation (ASF) under one * or more contributor
>> license agreements. See the NOTICE file * distributed with this work for
>> additional information * regarding copyright ownership. The ASF licenses
>> this file * to you under the Apache License, Version 2.0 (the * "License");
>> you may not use this file except in compliance * with the License. You may
>> obtain a copy of the License at * *
>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>> applicable law or agreed to in writing, * software distributed under the
>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>> the * specific language governing permissions and limitations * under the
>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>> at
>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>> at
>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>> at
>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>> at
>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>> at
>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>> column 982. Encountered: <EOF> after : "".
>> at
>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>> Source)
>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>> Source)
>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>> ... 9 more
>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at line
>> 1, column 982. Encountered: <EOF> after : "".
>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>> at
>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>> Source)
>> at
>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>> Source)
>> at
>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>> Source)
>> at
>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>> Source)
>> at
>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>> Source)
>> at org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>> Source)
>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>> ... 11 more
>> [ERROR] Server Start Error:
>> java.lang.RuntimeException: Database failure
>> at
>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:87)
>> at
>> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
>> at
>> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
>> at
>> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
>> at
>> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
>> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
>> Caused by: java.lang.Exception: Error occurred while executing : /* * *
>> Licensed to the Apache Software Foundation (ASF) under one * or more
>> contributor license agreements. See the NOTICE file * distributed with
>> this work for additional information * regarding copyright ownership. The
>> ASF licenses this file * to you under the Apache License, Version 2.0 (the
>> * "License"); you may not use this file except in compliance * with the
>> License. You may obtain a copy of the License at * *
>> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
>> applicable law or agreed to in writing, * software distributed under the
>> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
>> CONDITIONS OF ANY * KIND, either express or implied. See the License for
>> the * specific language governing permissions and limitations * under the
>> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
>> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
>> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
>> at
>> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
>> ... 5 more
>> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
>> column 982. Encountered: <EOF> after : "".
>> at
>> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
>> Source)
>> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
>> Source)
>> at org.apache.derby.client.am.Statement.execute(Unknown Source)
>> at
>> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
>> ... 9 more
>> Caused by: org.apache.derby.client.am.SqlException: Lexical error at line
>> 1, column 982. Encountered: <EOF> after : "".
>> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
>> at
>> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
>> Source)
>> at
>> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
>> Source)
>> at
>> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
>> Source)
>> at
>> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
>> Source)
>> at
>> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
>> Source)
>> at org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
>> Source)
>> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
>> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
>> ... 11 more
>> [INFO] Initiating client connection, con
>>
>> --
>> System Analyst Programmer
>> PTI Lab
>> Indiana University
>>
>
>
--
System Analyst Programmer
PTI Lab
Indiana University
Re: Error during start up of Airavata
Posted by Saminda Wijeratne <sa...@gmail.com>.
hmm... I thought I fixed this issue yesterday. Do you have the latest trunk?
On Mon, Jul 7, 2014 at 8:35 AM, Lahiru Gunathilake <gl...@gmail.com>
wrote:
> [ERROR] Error occurred while executing : /* * * Licensed to the Apache
> Software Foundation (ASF) under one * or more contributor license
> agreements. See the NOTICE file * distributed with this work for
> additional information * regarding copyright ownership. The ASF licenses
> this file * to you under the Apache License, Version 2.0 (the * "License");
> you may not use this file except in compliance * with the License. You may
> obtain a copy of the License at * *
> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
> applicable law or agreed to in writing, * software distributed under the
> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
> CONDITIONS OF ANY * KIND, either express or implied. See the License for
> the * specific language governing permissions and limitations * under the
> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
> java.lang.Exception: Error occurred while executing : /* * * Licensed to
> the Apache Software Foundation (ASF) under one * or more contributor
> license agreements. See the NOTICE file * distributed with this work for
> additional information * regarding copyright ownership. The ASF licenses
> this file * to you under the Apache License, Version 2.0 (the * "License");
> you may not use this file except in compliance * with the License. You may
> obtain a copy of the License at * *
> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
> applicable law or agreed to in writing, * software distributed under the
> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
> CONDITIONS OF ANY * KIND, either express or implied. See the License for
> the * specific language governing permissions and limitations * under the
> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
> at
> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
> at
> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
> at
> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
> at
> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
> at
> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
> at
> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
> at
> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
> at
> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
> at
> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
> column 982. Encountered: <EOF> after : "".
> at
> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
> Source)
> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
> Source)
> at org.apache.derby.client.am.Statement.execute(Unknown Source)
> at
> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
> ... 9 more
> Caused by: org.apache.derby.client.am.SqlException: Lexical error at line
> 1, column 982. Encountered: <EOF> after : "".
> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
> at
> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
> Source)
> at
> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
> Source)
> at
> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
> Source)
> at
> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
> Source)
> at
> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
> Source)
> at org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
> Source)
> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
> ... 11 more
> [ERROR] Server Start Error:
> java.lang.RuntimeException: Database failure
> at
> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:87)
> at
> org.apache.airavata.api.server.AiravataAPIServer.StartAiravataServer(AiravataAPIServer.java:63)
> at
> org.apache.airavata.api.server.AiravataAPIServer.start(AiravataAPIServer.java:125)
> at
> org.apache.airavata.server.ServerMain.startAllServers(ServerMain.java:266)
> at
> org.apache.airavata.server.ServerMain.performServerStart(ServerMain.java:121)
> at org.apache.airavata.server.ServerMain.main(ServerMain.java:113)
> Caused by: java.lang.Exception: Error occurred while executing : /* * *
> Licensed to the Apache Software Foundation (ASF) under one * or more
> contributor license agreements. See the NOTICE file * distributed with
> this work for additional information * regarding copyright ownership. The
> ASF licenses this file * to you under the Apache License, Version 2.0 (the
> * "License"); you may not use this file except in compliance * with the
> License. You may obtain a copy of the License at * *
> http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by
> applicable law or agreed to in writing, * software distributed under the
> License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR
> CONDITIONS OF ANY * KIND, either express or implied. See the License for
> the * specific language governing permissions and limitations * under the
> License. * */ /* CREATE TABLE COMPUTE_RESOURCE ( RESOURCE_ID VARCHAR(255),
> HOST_NAME VARCHAR(255), DESCRIPTION VARCHAR(255),
> PREFERRED_JOB_SUBMISSION_PROTOCOL VARCHAR(255), PRIMARY KEY(RESOURCE_ID) )
> at
> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:150)
> at
> org.apache.airavata.api.server.util.DatabaseCreator.executeSQLScript(DatabaseCreator.java:286)
> at
> org.apache.airavata.api.server.util.DatabaseCreator.createDatabase(DatabaseCreator.java:234)
> at
> org.apache.airavata.api.server.util.DatabaseCreator.createRegistryDatabase(DatabaseCreator.java:62)
> at
> org.apache.airavata.api.server.util.AppCatalogInitUtil.initializeDB(AppCatalogInitUtil.java:80)
> ... 5 more
> Caused by: java.sql.SQLSyntaxErrorException: Lexical error at line 1,
> column 982. Encountered: <EOF> after : "".
> at
> org.apache.derby.client.am.SQLExceptionFactory40.getSQLException(Unknown
> Source)
> at org.apache.derby.client.am.SqlException.getSQLException(Unknown
> Source)
> at org.apache.derby.client.am.Statement.execute(Unknown Source)
> at
> org.apache.airavata.api.server.util.DatabaseCreator.executeSQL(DatabaseCreator.java:122)
> ... 9 more
> Caused by: org.apache.derby.client.am.SqlException: Lexical error at line
> 1, column 982. Encountered: <EOF> after : "".
> at org.apache.derby.client.am.Statement.completeSqlca(Unknown Source)
> at
> org.apache.derby.client.net.NetStatementReply.parsePrepareError(Unknown
> Source)
> at
> org.apache.derby.client.net.NetStatementReply.parsePRPSQLSTTreply(Unknown
> Source)
> at
> org.apache.derby.client.net.NetStatementReply.readPrepareDescribeOutput(Unknown
> Source)
> at
> org.apache.derby.client.net.StatementReply.readPrepareDescribeOutput(Unknown
> Source)
> at
> org.apache.derby.client.net.NetStatement.readPrepareDescribeOutput_(Unknown
> Source)
> at org.apache.derby.client.am.Statement.readPrepareDescribeOutput(Unknown
> Source)
> at org.apache.derby.client.am.Statement.flowExecute(Unknown Source)
> at org.apache.derby.client.am.Statement.executeX(Unknown Source)
> ... 11 more
> [INFO] Initiating client connection, con
>
> --
> System Analyst Programmer
> PTI Lab
> Indiana University
>