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Posted to commits@ctakes.apache.org by ch...@apache.org on 2013/04/02 19:44:41 UTC
svn commit: r1463641 [8/42] - in /ctakes/trunk: ctakes-assertion-res/
ctakes-assertion-res/.settings/ ctakes-assertion-res/src/
ctakes-assertion-res/src/main/ ctakes-assertion-res/src/main/resources/
ctakes-assertion-res/src/main/resources/org/ ctakes-...
Added: ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.jdt.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.jdt.core.prefs?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.jdt.core.prefs (added)
+++ ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.jdt.core.prefs Tue Apr 2 17:41:30 2013
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Added: ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.ltk.core.refactoring.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.ltk.core.refactoring.prefs?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.ltk.core.refactoring.prefs (added)
+++ ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.ltk.core.refactoring.prefs Tue Apr 2 17:41:30 2013
@@ -0,0 +1,2 @@
+eclipse.preferences.version=1
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Added: ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.m2e.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.m2e.core.prefs?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.m2e.core.prefs (added)
+++ ctakes/trunk/ctakes-constituency-parser-res/.settings/org.eclipse.m2e.core.prefs Tue Apr 2 17:41:30 2013
@@ -0,0 +1,4 @@
+activeProfiles=
+eclipse.preferences.version=1
+resolveWorkspaceProjects=true
+version=1
Added: ctakes/trunk/ctakes-constituency-parser-res/LICENSE
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-constituency-parser-res/LICENSE?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-constituency-parser-res/LICENSE (added)
+++ ctakes/trunk/ctakes-constituency-parser-res/LICENSE Tue Apr 2 17:41:30 2013
@@ -0,0 +1,202 @@
+
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+ 6. Trademarks. This License does not grant permission to use the trade
+ names, trademarks, service marks, or product names of the Licensor,
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+ 7. Disclaimer of Warranty. Unless required by applicable law or
+ agreed to in writing, Licensor provides the Work (and each
+ Contributor provides its Contributions) on an "AS IS" BASIS,
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+ 8. Limitation of Liability. In no event and under no legal theory,
+ whether in tort (including negligence), contract, or otherwise,
+ unless required by applicable law (such as deliberate and grossly
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Added: ctakes/trunk/ctakes-constituency-parser-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-constituency-parser-res/pom.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-constituency-parser-res/pom.xml (added)
+++ ctakes/trunk/ctakes-constituency-parser-res/pom.xml Tue Apr 2 17:41:30 2013
@@ -0,0 +1,49 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+ <parent>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes</artifactId>
+ <version>3.1.0-SNAPSHOT</version>
+ </parent>
+ <artifactId>ctakes-constituency-parser-res</artifactId>
+ <name>Apache cTAKES Resources constituency-parser</name>
+ <description>Resources Project for constituency-parser</description>
+ <dependencies>
+ <dependency>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes-type-system</artifactId>
+ </dependency>
+ </dependencies>
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.cleartk</groupId>
+ <artifactId>jcasgen-maven-plugin</artifactId>
+ <configuration>
+ <typeSystem>src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml</typeSystem>
+ </configuration>
+ </plugin>
+ </plugins>
+ </build>
+</project>
\ No newline at end of file
Added: ctakes/trunk/ctakes-constituency-parser-res/src/main/resources/org/apache/ctakes/constituency/parser/models/sharpacq-1.5.bin
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-constituency-parser-res/src/main/resources/org/apache/ctakes/constituency/parser/models/sharpacq-1.5.bin?rev=1463641&view=auto
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Added: ctakes/trunk/ctakes-constituency-parser-res/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-constituency-parser-res/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-constituency-parser-res/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml (added)
+++ ctakes/trunk/ctakes-constituency-parser-res/src/main/resources/org/apache/ctakes/constituency/parser/types/LabeledTree.xml Tue Apr 2 17:41:30 2013
@@ -0,0 +1,46 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <name>org.apache.ctakes.constituency.parser.types.LabeledTree</name>
+ <description/>
+ <version>1.0</version>
+ <vendor/>
+ <types>
+ <typeDescription>
+ <name>org.apache.ctakes.constituency.parser.uima.type.BooleanLabeledTree</name>
+ <description/>
+ <supertypeName>uima.tcas.Annotation</supertypeName>
+ <features>
+ <featureDescription>
+ <name>label</name>
+ <description/>
+ <rangeTypeName>uima.cas.Boolean</rangeTypeName>
+ </featureDescription>
+ <featureDescription>
+ <name>tree</name>
+ <description/>
+ <rangeTypeName>uima.cas.String</rangeTypeName>
+ </featureDescription>
+ </features>
+ </typeDescription>
+ </types>
+</typeSystemDescription>
Added: ctakes/trunk/ctakes-core-res/.classpath
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/.classpath?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/.classpath (added)
+++ ctakes/trunk/ctakes-core-res/.classpath Tue Apr 2 17:41:30 2013
@@ -0,0 +1,31 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+ <classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
+ <attributes>
+ <attribute name="maven.pomderived" value="true"/>
+ </attributes>
+ </classpathentry>
+ <classpathentry kind="src" output="target/classes" path="src/main/java">
+ <attributes>
+ <attribute name="optional" value="true"/>
+ <attribute name="maven.pomderived" value="true"/>
+ </attributes>
+ </classpathentry>
+ <classpathentry kind="src" output="target/test-classes" path="src/test/java">
+ <attributes>
+ <attribute name="optional" value="true"/>
+ <attribute name="maven.pomderived" value="true"/>
+ </attributes>
+ </classpathentry>
+ <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
+ <attributes>
+ <attribute name="maven.pomderived" value="true"/>
+ </attributes>
+ </classpathentry>
+ <classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
+ <attributes>
+ <attribute name="maven.pomderived" value="true"/>
+ </attributes>
+ </classpathentry>
+ <classpathentry kind="output" path="target/classes"/>
+</classpath>
Added: ctakes/trunk/ctakes-core-res/.project
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/.project?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/.project (added)
+++ ctakes/trunk/ctakes-core-res/.project Tue Apr 2 17:41:30 2013
@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<projectDescription>
+ <name>ctakes-core-res</name>
+ <comment></comment>
+ <projects>
+ </projects>
+ <buildSpec>
+ <buildCommand>
+ <name>org.eclipse.jdt.core.javabuilder</name>
+ <arguments>
+ </arguments>
+ </buildCommand>
+ <buildCommand>
+ <name>org.eclipse.m2e.core.maven2Builder</name>
+ <arguments>
+ </arguments>
+ </buildCommand>
+ </buildSpec>
+ <natures>
+ <nature>org.eclipse.jdt.core.javanature</nature>
+ <nature>org.eclipse.m2e.core.maven2Nature</nature>
+ </natures>
+</projectDescription>
Added: ctakes/trunk/ctakes-core-res/.settings/org.eclipse.core.resources.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/.settings/org.eclipse.core.resources.prefs?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/.settings/org.eclipse.core.resources.prefs (added)
+++ ctakes/trunk/ctakes-core-res/.settings/org.eclipse.core.resources.prefs Tue Apr 2 17:41:30 2013
@@ -0,0 +1,5 @@
+eclipse.preferences.version=1
+encoding//src/main/java=UTF-8
+encoding//src/main/resources=UTF-8
+encoding//src/test/java=UTF-8
+encoding/<project>=UTF-8
Added: ctakes/trunk/ctakes-core-res/.settings/org.eclipse.jdt.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/.settings/org.eclipse.jdt.core.prefs?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/.settings/org.eclipse.jdt.core.prefs (added)
+++ ctakes/trunk/ctakes-core-res/.settings/org.eclipse.jdt.core.prefs Tue Apr 2 17:41:30 2013
@@ -0,0 +1,88 @@
+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.annotation.missingNonNullByDefaultAnnotation=ignore
+org.eclipse.jdt.core.compiler.annotation.nonnull=org.eclipse.jdt.annotation.NonNull
+org.eclipse.jdt.core.compiler.annotation.nonnullbydefault=org.eclipse.jdt.annotation.NonNullByDefault
+org.eclipse.jdt.core.compiler.annotation.nullable=org.eclipse.jdt.annotation.Nullable
+org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
+org.eclipse.jdt.core.compiler.compliance=1.6
+org.eclipse.jdt.core.compiler.problem.annotationSuperInterface=warning
+org.eclipse.jdt.core.compiler.problem.autoboxing=ignore
+org.eclipse.jdt.core.compiler.problem.comparingIdentical=warning
+org.eclipse.jdt.core.compiler.problem.deadCode=warning
+org.eclipse.jdt.core.compiler.problem.deprecation=warning
+org.eclipse.jdt.core.compiler.problem.deprecationInDeprecatedCode=disabled
+org.eclipse.jdt.core.compiler.problem.deprecationWhenOverridingDeprecatedMethod=disabled
+org.eclipse.jdt.core.compiler.problem.discouragedReference=warning
+org.eclipse.jdt.core.compiler.problem.emptyStatement=warning
+org.eclipse.jdt.core.compiler.problem.explicitlyClosedAutoCloseable=warning
+org.eclipse.jdt.core.compiler.problem.fallthroughCase=ignore
+org.eclipse.jdt.core.compiler.problem.fatalOptionalError=disabled
+org.eclipse.jdt.core.compiler.problem.fieldHiding=warning
+org.eclipse.jdt.core.compiler.problem.finalParameterBound=warning
+org.eclipse.jdt.core.compiler.problem.finallyBlockNotCompletingNormally=warning
+org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
+org.eclipse.jdt.core.compiler.problem.hiddenCatchBlock=warning
+org.eclipse.jdt.core.compiler.problem.includeNullInfoFromAsserts=disabled
+org.eclipse.jdt.core.compiler.problem.incompatibleNonInheritedInterfaceMethod=warning
+org.eclipse.jdt.core.compiler.problem.incompleteEnumSwitch=warning
+org.eclipse.jdt.core.compiler.problem.indirectStaticAccess=warning
+org.eclipse.jdt.core.compiler.problem.localVariableHiding=warning
+org.eclipse.jdt.core.compiler.problem.methodWithConstructorName=warning
+org.eclipse.jdt.core.compiler.problem.missingDefaultCase=ignore
+org.eclipse.jdt.core.compiler.problem.missingDeprecatedAnnotation=warning
+org.eclipse.jdt.core.compiler.problem.missingEnumCaseDespiteDefault=disabled
+org.eclipse.jdt.core.compiler.problem.missingHashCodeMethod=warning
+org.eclipse.jdt.core.compiler.problem.missingOverrideAnnotation=warning
+org.eclipse.jdt.core.compiler.problem.missingOverrideAnnotationForInterfaceMethodImplementation=disabled
+org.eclipse.jdt.core.compiler.problem.missingSerialVersion=warning
+org.eclipse.jdt.core.compiler.problem.missingSynchronizedOnInheritedMethod=warning
+org.eclipse.jdt.core.compiler.problem.noEffectAssignment=warning
+org.eclipse.jdt.core.compiler.problem.noImplicitStringConversion=warning
+org.eclipse.jdt.core.compiler.problem.nonExternalizedStringLiteral=ignore
+org.eclipse.jdt.core.compiler.problem.nullAnnotationInferenceConflict=error
+org.eclipse.jdt.core.compiler.problem.nullReference=warning
+org.eclipse.jdt.core.compiler.problem.nullSpecViolation=error
+org.eclipse.jdt.core.compiler.problem.nullUncheckedConversion=warning
+org.eclipse.jdt.core.compiler.problem.overridingPackageDefaultMethod=warning
+org.eclipse.jdt.core.compiler.problem.parameterAssignment=ignore
+org.eclipse.jdt.core.compiler.problem.possibleAccidentalBooleanAssignment=warning
+org.eclipse.jdt.core.compiler.problem.potentialNullReference=warning
+org.eclipse.jdt.core.compiler.problem.potentiallyUnclosedCloseable=warning
+org.eclipse.jdt.core.compiler.problem.rawTypeReference=warning
+org.eclipse.jdt.core.compiler.problem.redundantNullAnnotation=warning
+org.eclipse.jdt.core.compiler.problem.redundantNullCheck=warning
+org.eclipse.jdt.core.compiler.problem.redundantSpecificationOfTypeArguments=warning
+org.eclipse.jdt.core.compiler.problem.redundantSuperinterface=warning
+org.eclipse.jdt.core.compiler.problem.reportMethodCanBePotentiallyStatic=ignore
+org.eclipse.jdt.core.compiler.problem.reportMethodCanBeStatic=warning
+org.eclipse.jdt.core.compiler.problem.specialParameterHidingField=disabled
+org.eclipse.jdt.core.compiler.problem.staticAccessReceiver=warning
+org.eclipse.jdt.core.compiler.problem.suppressOptionalErrors=disabled
+org.eclipse.jdt.core.compiler.problem.suppressWarnings=enabled
+org.eclipse.jdt.core.compiler.problem.syntheticAccessEmulation=warning
+org.eclipse.jdt.core.compiler.problem.typeParameterHiding=warning
+org.eclipse.jdt.core.compiler.problem.unavoidableGenericTypeProblems=enabled
+org.eclipse.jdt.core.compiler.problem.uncheckedTypeOperation=warning
+org.eclipse.jdt.core.compiler.problem.unclosedCloseable=warning
+org.eclipse.jdt.core.compiler.problem.undocumentedEmptyBlock=warning
+org.eclipse.jdt.core.compiler.problem.unhandledWarningToken=warning
+org.eclipse.jdt.core.compiler.problem.unnecessaryElse=warning
+org.eclipse.jdt.core.compiler.problem.unnecessaryTypeCheck=warning
+org.eclipse.jdt.core.compiler.problem.unqualifiedFieldAccess=ignore
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownException=warning
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionExemptExceptionAndThrowable=enabled
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionIncludeDocCommentReference=enabled
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionWhenOverriding=disabled
+org.eclipse.jdt.core.compiler.problem.unusedImport=warning
+org.eclipse.jdt.core.compiler.problem.unusedLabel=warning
+org.eclipse.jdt.core.compiler.problem.unusedLocal=warning
+org.eclipse.jdt.core.compiler.problem.unusedObjectAllocation=warning
+org.eclipse.jdt.core.compiler.problem.unusedParameter=warning
+org.eclipse.jdt.core.compiler.problem.unusedParameterIncludeDocCommentReference=enabled
+org.eclipse.jdt.core.compiler.problem.unusedParameterWhenImplementingAbstract=disabled
+org.eclipse.jdt.core.compiler.problem.unusedParameterWhenOverridingConcrete=disabled
+org.eclipse.jdt.core.compiler.problem.unusedPrivateMember=warning
+org.eclipse.jdt.core.compiler.problem.unusedWarningToken=ignore
+org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=warning
+org.eclipse.jdt.core.compiler.source=1.6
Added: ctakes/trunk/ctakes-core-res/.settings/org.eclipse.ltk.core.refactoring.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/.settings/org.eclipse.ltk.core.refactoring.prefs?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/.settings/org.eclipse.ltk.core.refactoring.prefs (added)
+++ ctakes/trunk/ctakes-core-res/.settings/org.eclipse.ltk.core.refactoring.prefs Tue Apr 2 17:41:30 2013
@@ -0,0 +1,2 @@
+eclipse.preferences.version=1
+org.eclipse.ltk.core.refactoring.enable.project.refactoring.history=false
Added: ctakes/trunk/ctakes-core-res/.settings/org.eclipse.m2e.core.prefs
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/.settings/org.eclipse.m2e.core.prefs?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/.settings/org.eclipse.m2e.core.prefs (added)
+++ ctakes/trunk/ctakes-core-res/.settings/org.eclipse.m2e.core.prefs Tue Apr 2 17:41:30 2013
@@ -0,0 +1,4 @@
+activeProfiles=
+eclipse.preferences.version=1
+resolveWorkspaceProjects=true
+version=1
Added: ctakes/trunk/ctakes-core-res/LICENSE
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/LICENSE?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/LICENSE (added)
+++ ctakes/trunk/ctakes-core-res/LICENSE Tue Apr 2 17:41:30 2013
@@ -0,0 +1,202 @@
+
+ Apache License
+ Version 2.0, January 2004
+ http://www.apache.org/licenses/
+
+ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+ 1. Definitions.
+
+ "License" shall mean the terms and conditions for use, reproduction,
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+ "Derivative Works" shall mean any work, whether in Source or Object
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+ "Contribution" shall mean any work of authorship, including
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+ "Contributor" shall mean Licensor and any individual or Legal Entity
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+ 2. Grant of Copyright License. Subject to the terms and conditions of
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+ 5. Submission of Contributions. Unless You explicitly state otherwise,
+ any Contribution intentionally submitted for inclusion in the Work
+ by You to the Licensor shall be under the terms and conditions of
+ this License, without any additional terms or conditions.
+ Notwithstanding the above, nothing herein shall supersede or modify
+ the terms of any separate license agreement you may have executed
+ with Licensor regarding such Contributions.
+
+ 6. Trademarks. This License does not grant permission to use the trade
+ names, trademarks, service marks, or product names of the Licensor,
+ except as required for reasonable and customary use in describing the
+ origin of the Work and reproducing the content of the NOTICE file.
+
+ 7. Disclaimer of Warranty. Unless required by applicable law or
+ agreed to in writing, Licensor provides the Work (and each
+ Contributor provides its Contributions) on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
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+ of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
+ PARTICULAR PURPOSE. You are solely responsible for determining the
+ appropriateness of using or redistributing the Work and assume any
+ risks associated with Your exercise of permissions under this License.
+
+ 8. Limitation of Liability. In no event and under no legal theory,
+ whether in tort (including negligence), contract, or otherwise,
+ unless required by applicable law (such as deliberate and grossly
+ negligent acts) or agreed to in writing, shall any Contributor be
+ liable to You for damages, including any direct, indirect, special,
+ incidental, or consequential damages of any character arising as a
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+ has been advised of the possibility of such damages.
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+ 9. Accepting Warranty or Additional Liability. While redistributing
+ the Work or Derivative Works thereof, You may choose to offer,
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+ or other liability obligations and/or rights consistent with this
+ License. However, in accepting such obligations, You may act only
+ on Your own behalf and on Your sole responsibility, not on behalf
+ of any other Contributor, and only if You agree to indemnify,
+ defend, and hold each Contributor harmless for any liability
+ incurred by, or claims asserted against, such Contributor by reason
+ of your accepting any such warranty or additional liability.
+
+ END OF TERMS AND CONDITIONS
+
+ APPENDIX: How to apply the Apache License to your work.
+
+ To apply the Apache License to your work, attach the following
+ boilerplate notice, with the fields enclosed by brackets "[]"
+ replaced with your own identifying information. (Don't include
+ the brackets!) The text should be enclosed in the appropriate
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+ Licensed under the Apache License, Version 2.0 (the "License");
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+
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
Added: ctakes/trunk/ctakes-core-res/pom.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/pom.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/pom.xml (added)
+++ ctakes/trunk/ctakes-core-res/pom.xml Tue Apr 2 17:41:30 2013
@@ -0,0 +1,32 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+ <parent>
+ <groupId>org.apache.ctakes</groupId>
+ <artifactId>ctakes</artifactId>
+ <version>3.1.0-SNAPSHOT</version>
+ </parent>
+ <artifactId>ctakes-core-res</artifactId>
+ <name>Apache cTAKES Resources core</name>
+ <description>Resources Project for ctakes-core</description>
+</project>
\ No newline at end of file
Added: ctakes/trunk/ctakes-core-res/src/main/resources/log4j.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/log4j.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/log4j.xml (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/log4j.xml Tue Apr 2 17:41:30 2013
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="UTF-8" ?> <!DOCTYPE log4j:configuration SYSTEM "log4j.dtd">
+<log4j:configuration debug="true"
+ xmlns:log4j='http://jakarta.apache.org/log4j/'>
+ <appender name="consoleAppender" class="org.apache.log4j.ConsoleAppender">
+ <layout class="org.apache.log4j.PatternLayout">
+ <param name="ConversionPattern" value="%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n" />
+ </layout>
+ </appender>
+ <appender name="fileAppender" class="org.apache.log4j.RollingFileAppender">
+ <param name="append" value="false" />
+ <param name="file" value="out/ctakes.log" />
+ <layout class="org.apache.log4j.PatternLayout">
+ <param name="ConversionPattern" value="%d{ABSOLUTE} %-5p [%c{1}] %m%n" />
+ </layout>
+ </appender>
+ <root>
+ <level value="INFO" />
+ <appender-ref ref="consoleAppender" />
+ <!-- <appender-ref ref="fileAppender" /> -->
+ </root>
+</log4j:configuration>
\ No newline at end of file
Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/analysis_engine/SentenceDetectorAnnotator.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/analysis_engine/SentenceDetectorAnnotator.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/analysis_engine/SentenceDetectorAnnotator.xml (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/analysis_engine/SentenceDetectorAnnotator.xml Tue Apr 2 17:41:30 2013
@@ -0,0 +1,93 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+<primitive>true</primitive>
+<annotatorImplementationName>org.apache.ctakes.core.ae.SentenceDetector</annotatorImplementationName>
+<analysisEngineMetaData>
+<name>Sentence Detector annotator</name>
+<description>Discovers sentence boundaries.</description>
+<version>2.1</version>
+<vendor>Mayo Clinic</vendor>
+<configurationParameters>
+<configurationParameter>
+<name>SegmentsToSkip</name>
+<type>String</type>
+<multiValued>true</multiValued>
+<mandatory>false</mandatory>
+</configurationParameter>
+</configurationParameters>
+<configurationParameterSettings>
+<nameValuePair>
+<name>SegmentsToSkip</name>
+<value>
+<array/>
+</value>
+</nameValuePair>
+</configurationParameterSettings>
+<typeSystemDescription/>
+<typePriorities/>
+<fsIndexCollection/>
+<capabilities>
+<capability>
+<inputs>
+<type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
+</inputs>
+<outputs>
+<type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.Sentence</type>
+</outputs>
+<languagesSupported/>
+</capability>
+</capabilities>
+<operationalProperties>
+<modifiesCas>true</modifiesCas>
+<multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+<outputsNewCASes>false</outputsNewCASes>
+</operationalProperties>
+</analysisEngineMetaData>
+<externalResourceDependencies>
+<externalResourceDependency>
+<key>MaxentModel</key>
+<description></description>
+<interfaceName>org.apache.ctakes.core.resource.MaxentModelResource</interfaceName>
+<optional>false</optional>
+</externalResourceDependency>
+</externalResourceDependencies>
+<resourceManagerConfiguration>
+<externalResources>
+<externalResource>
+<name>MaxentModelFile</name>
+<description></description>
+<fileResourceSpecifier>
+<fileUrl>file:org/apache/ctakes/core/sentdetect/sdmed.mod</fileUrl>
+</fileResourceSpecifier>
+<implementationName>org.apache.ctakes.core.resource.SuffixMaxentModelResourceImpl</implementationName>
+</externalResource>
+</externalResources>
+<externalResourceBindings>
+<externalResourceBinding>
+<key>MaxentModel</key>
+<resourceName>MaxentModelFile</resourceName>
+</externalResourceBinding>
+</externalResourceBindings>
+</resourceManagerConfiguration>
+</taeDescription>
Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/analysis_engine/TokenizerAnnotator.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/analysis_engine/TokenizerAnnotator.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/analysis_engine/TokenizerAnnotator.xml (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/analysis_engine/TokenizerAnnotator.xml Tue Apr 2 17:41:30 2013
@@ -0,0 +1,76 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<taeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+<frameworkImplementation>org.apache.uima.java</frameworkImplementation>
+<primitive>true</primitive>
+<annotatorImplementationName>org.apache.ctakes.core.ae.TokenizerAnnotatorPTB</annotatorImplementationName>
+<analysisEngineMetaData>
+<name>TokenizerAnnotatorPTB</name>
+<description>Discovers tokens in the given text, following Penn TreeBank tokenization rules. These tokens consist of words, punctuation, etc...</description>
+<version>2.3</version>
+<vendor>Mayo Clinic</vendor>
+<configurationParameters>
+<configurationParameter>
+<name>SegmentsToSkip</name>
+<description>Segments to skip.</description>
+<type>String</type>
+<multiValued>true</multiValued>
+<mandatory>false</mandatory>
+</configurationParameter>
+</configurationParameters>
+<configurationParameterSettings>
+<nameValuePair>
+<name>SegmentsToSkip</name>
+<value>
+<array/>
+</value>
+</nameValuePair>
+</configurationParameterSettings>
+<typeSystemDescription>
+<imports>
+<import name="org.apache.ctakes.typesystem.types.TypeSystem"/>
+</imports>
+</typeSystemDescription>
+<typePriorities/>
+<fsIndexCollection/>
+<capabilities>
+<capability>
+<inputs>
+<type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.textspan.Segment</type>
+</inputs>
+<outputs>
+<type allAnnotatorFeatures="true">org.apache.ctakes.typesystem.type.syntax.BaseToken</type>
+</outputs>
+<languagesSupported/>
+</capability>
+</capabilities>
+<operationalProperties>
+<modifiesCas>true</modifiesCas>
+<multipleDeploymentAllowed>true</multipleDeploymentAllowed>
+<outputsNewCASes>false</outputsNewCASes>
+</operationalProperties>
+</analysisEngineMetaData>
+<externalResourceDependencies>
+</externalResourceDependencies>
+<resourceManagerConfiguration>
+</resourceManagerConfiguration>
+</taeDescription>
Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/cc/jdbc/TestBinding.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/cc/jdbc/TestBinding.xml?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/cc/jdbc/TestBinding.xml (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/cc/jdbc/TestBinding.xml Tue Apr 2 17:41:30 2013
@@ -0,0 +1,58 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<root>
+ <preparedStatements>
+ <preparedStatement id="TEST_QUERY_PREP_STMT" sql="select count(*) as MYCOUNT from TXTPH3.JDBC_CC_TEST"/>
+ <preparedStatement id="TEST_INSERT_PREP_STMT" sql="insert into TXTPH3.JDBC_CC_TEST (C1, C2, C3,C4) values (?,?,?,?)"/>
+ </preparedStatements>
+ <executionFlow>
+ <query idref="TEST_QUERY_PREP_STMT">
+ <paramBindings/>
+ <resultSetBindings>
+ <binding>
+ <variable id="MYCOUNT" scope="GLOBAL"/>
+ <prepStmtResult column="MYCOUNT" dataType="INTEGER"/>
+ </binding>
+ </resultSetBindings>
+ </query>
+ <insert idref="TEST_INSERT_PREP_STMT" batchUpdate="TRUE">
+ <paramBindings>
+ <binding>
+ <prepStmtParam dataType="DECIMAL"/>
+ <variableRef idref="MYCOUNT" scope="GLOBAL"/>
+ </binding>
+ <binding>
+ <prepStmtParam dataType="INTEGER"/>
+ <variableRef idref="MYCOUNT" scope="GLOBAL"/>
+ </binding>
+ <binding>
+ <prepStmtParam dataType="CLOB"/>
+ <variableRef idref="NORM_DOC_TEXT" scope="GLOBAL"/>
+ </binding>
+ <binding>
+ <prepStmtParam dataType="BLOB"/>
+ <variableRef idref="NORM_DOC_MAP" scope="GLOBAL"/>
+ </binding>
+ </paramBindings>
+ </insert>
+ </executionFlow>
+</root>
Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/eclipse/spellingdictionaryforsourcecode.txt
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/eclipse/spellingdictionaryforsourcecode.txt?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/eclipse/spellingdictionaryforsourcecode.txt (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/eclipse/spellingdictionaryforsourcecode.txt Tue Apr 2 17:41:30 2013
@@ -0,0 +1,27 @@
+annotator
+tagger
+Treebank
+Penn
+config
+hsqldb
+jdbc
+download
+lvg
+edu
+mayo
+Mayo
+bmi
+uima
+UIMA
+apache
+Lvg
+xml
+org
+apache
+tcas
+jcas
+tgz
+chunker
+Chunker
+opennlp
+
Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/log4j.properties
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/log4j.properties?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/log4j.properties (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/log4j.properties Tue Apr 2 17:41:30 2013
@@ -0,0 +1,41 @@
+#
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+#
+
+###############################################################################
+
+log4j.rootLogger=INFO, Console
+
+###############################################################################
+
+# Rolling File Appender definition
+log4j.appender.RFile=org.apache.log4j.RollingFileAppender
+log4j.appender.RFile.File=textAnalysis.log
+log4j.appender.RFile.MaxFileSize=1024KB
+log4j.appender.RFile.MaxBackupIndex=1
+log4j.appender.RFile.layout=org.apache.log4j.PatternLayout
+log4j.appender.RFile.layout.ConversionPattern=%d %-5p %c %x - %m%n
+
+###############################################################################
+
+# Console Appender definition
+log4j.appender.Console=org.apache.log4j.ConsoleAppender
+log4j.appender.Console.layout=org.apache.log4j.PatternLayout
+log4j.appender.Console.layout.ConversionPattern=%d %-5p %c %x - %m%n
+
+###############################################################################
\ No newline at end of file
Added: ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/README
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/README?rev=1463641&view=auto
==============================================================================
--- ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/README (added)
+++ ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/README Tue Apr 2 17:41:30 2013
@@ -0,0 +1,110 @@
+Contents:
+- Included sentence detector model
+- Training a sentence detector model from the included sample data
+- Training a sentence detector model from other training data
+- Verifying you can train a sentence detector model successfully
+- FYI - Using opennlp directly
+- Running the SentenceDetectorAnnotator analysis engine
+ - SentenceDetectorAggregate.xml
+ - SentenceDetectorCPE.xml
+ - SentenceDetectorAnnotator.xml
+
+
+################################################################
+Included sentence detector model
+################################################################
+A sentence detector model is included with this project.
+
+The model derives from a combination of GENIA, Penn Treebank (Wall Street Journal) and anonymized
+clinical data per Safe Harbor HIPAA guidelines. Prior to model building, the clinical data was
+deidentified for patient names to preserve patient confidentiality. Any person name in the model
+will originate from non-patient data sources.
+
+
+################################################################
+Training a sentence detector model from the included sample data
+################################################################
+
+To train a sentence detector that recognizes the same set of candidate
+end-of-sentence characters that the SentenceDetectorAnnotator uses,
+using the included sample training sentences, use the included launch
+called "SentenceDetector - train a new model", or use:
+ java org.apache.ctakes.core.ae.SentenceDetector
+ data/test/sample_sd_training_sentences.txt
+ resources/sentdetect/sample_sd.mod
+
+
+###########################################################
+Training a sentence detector model from other training data
+###########################################################
+
+To train a sentence detector that recognizes the same set of candidate
+end-of-sentence characters that the SentenceDetectorAnnotator uses,
+on the Run dialog within eclipse, set the Program arguments on the Arguments
+tab (the first argument is your sentences training data file) for the
+included launch called "SentenceDetector - train a new model".
+
+The first argument is your sentences training data file
+The second argument is the name of the model file to be created
+The third argument is the number of iterations for training
+The fourth argument is the cutoff value used
+
+An alternative to using the launch is to use:
+ java org.apache.ctakes.core.ae.SentenceDetector sents_file model iters? cut?
+where sents_file contains one sentence per line,
+model is the file that is to be created,
+and iters and cut are optional parameters.
+
+For example, sents_file could contain the following four lines:
+The boy ran.
+Did the girl run too?
+Yes, she did.
+Where did she go?
+
+
+##############################################################
+Verifying you can train a sentence detector model successfully
+##############################################################
+
+Train a sentence detector model from the included sample data, as described
+above.
+Compare the contents of your sentence detector model to the included sample
+sentence detector model. You might use diff, like this:
+diff resources/sentdetect/sample_sd.mod resources/sentdetect/sample_sd_included.mod
+
+
+############################
+FYI - Using opennlp directly
+############################
+
+You can train a sentence detector directly using the opennlp sentence detector
+(SentenceDetectorME) with the default set of candidate end-of-sentence
+characters, using
+ java opennlp.tools.sentdetect.SentenceDetectorME infile outfile (iters cut)?
+where infile contains one sentence per line (new lines separating sentences)
+For example, infile could contain the following four lines:
+The boy ran.
+Did the girl run too?
+Yes, she did.
+Where did she go?
+
+
+######################################################
+Running the SentenceDetectorAnnotator analysis engine
+######################################################
+
+Launch the "SentenceDetector annotator" run configuration.
+Open CPE SentenceDetectorCPE.xml, which uses the analysis
+engines listed in SentenceDetectorAggregate.xml.
+
+The aggregate analysis engine is defined to read from plain text file(s) in
+data\test\sample_notes_plaintext
+using the FilesInDirectoryCollectionReader.
+
+Since the sentence annotator processes the text one section at a time, there
+must be at least one section (segment) annotation for the SentenceDetectorAnnotator
+to add Sentence annotations.
+Therefore the first analysis engine is the SimpleSegmentAnnotator, which
+creates a single Segment annotation that covers the entire text.
+Then the SentenceDetectorAnnotator analysis engine adds Sentence annotations.
+