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Posted to issues@hbase.apache.org by "stack (JIRA)" <ji...@apache.org> on 2018/04/07 16:33:00 UTC
[jira] [Updated] (HBASE-20295) TableOutputFormat.checkOutputSpecs
throw NullPointerException Exception
[ https://issues.apache.org/jira/browse/HBASE-20295?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
stack updated HBASE-20295:
--------------------------
Resolution: Fixed
Hadoop Flags: Reviewed
Fix Version/s: 2.0.0
Status: Resolved (was: Patch Available)
> TableOutputFormat.checkOutputSpecs throw NullPointerException Exception
> -----------------------------------------------------------------------
>
> Key: HBASE-20295
> URL: https://issues.apache.org/jira/browse/HBASE-20295
> Project: HBase
> Issue Type: Bug
> Components: mapreduce
> Affects Versions: 1.4.0
> Environment: Spark 2.2.1, HBase 1.4.0
> Reporter: Michael Jin
> Assignee: Michael Jin
> Priority: Major
> Fix For: 2.0.0
>
> Attachments: HBASE-20295.branch-1.4.001.patch, HBASE-20295.master.001.patch, HBASE-20295.master.002.patch, HBASE-20295.master.003.patch
>
> Original Estimate: 168h
> Remaining Estimate: 168h
>
> I am using spark write data to HBase by using RDD.
> saveAsNewAPIHadoopDataset function, it works fine with hbase 1.3.1, but when update my hbase dependency to 1.4.0 in pom.xml, it throw java.lang.NullPointerException, it is caused by a logic error in TableOutputFormat.checkOutputSpecs function, please check below details:
> first let's take a look at SparkHadoopMapReduceWriter.write function in SparkHadoopMapReduceWriter.scala
> {code:java}
> // SparkHadoopMapReduceWriter.write (org.apache.spark.internal.io.SparkHadoopMapReduceWriter.scala)
> def write[K, V: ClassTag](
> rdd: RDD[(K, V)],
> hadoopConf: Configuration): Unit = {
> // Extract context and configuration from RDD.
> val sparkContext = rdd.context
> val stageId = rdd.id
> val sparkConf = rdd.conf
> val conf = new SerializableConfiguration(hadoopConf)
> // Set up a job.
> val jobTrackerId = SparkHadoopWriterUtils.createJobTrackerID(new Date())
> val jobAttemptId = new TaskAttemptID(jobTrackerId, stageId, TaskType.MAP, 0, 0)
> val jobContext = new TaskAttemptContextImpl(conf.value, jobAttemptId)
> val format = jobContext.getOutputFormatClass
> if (SparkHadoopWriterUtils.isOutputSpecValidationEnabled(sparkConf)) {
> // FileOutputFormat ignores the filesystem parameter
> val jobFormat = format.newInstance
> jobFormat.checkOutputSpecs(jobContext)
> }
> val committer = FileCommitProtocol.instantiate(
> className = classOf[HadoopMapReduceCommitProtocol].getName,
> jobId = stageId.toString,
> outputPath = conf.value.get("mapreduce.output.fileoutputformat.outputdir"),
> isAppend = false).asInstanceOf[HadoopMapReduceCommitProtocol]
> committer.setupJob(jobContext)
> ...{code}
> in "write" function if output spec validation is enabled, it will call checkOutputSpec function in TableOutputFormat class, but the job format is simply created by "vall jobFormat = format.newInstance", this will NOT initialize "conf" member variable in TableOutputFormat class, let's continue check checkOutputSpecs function in TableOutputFormat class
>
> {code:java}
> // TableOutputFormat.checkOutputSpecs (org.apache.hadoop.hbase.mapreduce.TableOutputFormat.java) HBASE 1.4.0
> @Override
> public void checkOutputSpecs(JobContext context) throws IOException,
> InterruptedException {
> try (Admin admin = ConnectionFactory.createConnection(getConf()).getAdmin()) {
> TableName tableName = TableName.valueOf(this.conf.get(OUTPUT_TABLE));
> if (!admin.tableExists(tableName)) {
> throw new TableNotFoundException("Can't write, table does not exist:" +
> tableName.getNameAsString());
> }
> if (!admin.isTableEnabled(tableName)) {
> throw new TableNotEnabledException("Can't write, table is not enabled: " +
> tableName.getNameAsString());
> }
> }
> }
> {code}
>
> "ConnectionFactory.createConnection(getConf())", as mentioned above "conf" class member is not initialized, so getConf() will return null, so in the next UserProvider create instance process, it throw the NullPointException(Please part of stack trace at the end), it is a little confused that, context passed by function parameter is actually been properly constructed, and it contains Configuration object, why context is never used? So I suggest to use below code to partly fix this issue:
>
> {code:java}
> // code placeholder
> @Override
> public void checkOutputSpecs(JobContext context) throws IOException,
> InterruptedException {
> Configuration hConf = context.getConfiguration();
> if(hConf == null)
> hConf = this.conf;
> try (Admin admin = ConnectionFactory.createConnection(hConf).getAdmin()) {
> TableName tableName = TableName.valueOf(hConf.get(OUTPUT_TABLE));
> if (!admin.tableExists(tableName)) {
> throw new TableNotFoundException("Can't write, table does not exist:" +
> tableName.getNameAsString());
> }
> if (!admin.isTableEnabled(tableName)) {
> throw new TableNotEnabledException("Can't write, table is not enabled: " +
> tableName.getNameAsString());
> }
> }
> }
> {code}
> In hbase 1.3.1, this issue is not exists because checkOutputSpecs has a blank function body
>
>
> Part of stack trace:
> Exception in thread "main" java.lang.NullPointerException
> at org.apache.hadoop.hbase.security.UserProvider.instantiate(UserProvider.java:122)
> at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:214)
> at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:119)
> at org.apache.hadoop.hbase.mapreduce.TableOutputFormat.checkOutputSpecs(TableOutputFormat.java:177)
> at org.apache.spark.internal.io.SparkHadoopMapReduceWriter$.write(SparkHadoopMapReduceWriter.scala:76)
> at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1.apply$mcV$sp(PairRDDFunctions.scala:1085)
> at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1.apply(PairRDDFunctions.scala:1085)
> at org.apache.spark.rdd.PairRDDFunctions$$anonfun$saveAsNewAPIHadoopDataset$1.apply(PairRDDFunctions.scala:1085)
> at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151)
> at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112)
> at org.apache.spark.rdd.RDD.withScope(RDD.scala:362)
> at org.apache.spark.rdd.PairRDDFunctions.saveAsNewAPIHadoopDataset(PairRDDFunctions.scala:1084)
>
>
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