You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@ctakes.apache.org by se...@apache.org on 2013/01/09 20:15:53 UTC
svn commit: r1431015 - in /incubator/ctakes/trunk/ctakes-side-effect/desc:
collection_processing_engine/ cpe/
Author: seanfinan
Date: Wed Jan 9 19:15:52 2013
New Revision: 1431015
URL: http://svn.apache.org/viewvc?rev=1431015&view=rev
Log:
CTAKES-120 : Moving CPEs from directory cpe/ to collection_processing_engine/ to conform with new structure
Added:
incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectCPE.xml (with props)
incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentenceCPE.xml (with props)
incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentence_CDA_CPE.xml (with props)
incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffect_CDA_CPE.xml (with props)
Removed:
incubator/ctakes/trunk/ctakes-side-effect/desc/cpe/
Added: incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectCPE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectCPE.xml?rev=1431015&view=auto
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectCPE.xml (added)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectCPE.xml Wed Jan 9 19:15:52 2013
@@ -0,0 +1,98 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <collectionReader>
+ <collectionIterator>
+ <descriptor>
+ <import location="../../../ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml"/>
+ </descriptor>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>InputDirectory</name>
+ <value>
+ <string>/dir_with_input_files</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </collectionIterator>
+ </collectionReader>
+ <casProcessors casPoolSize="3" processingUnitThreadCount="1">
+ <casProcessor deployment="integrated" name="SideEffectAggregateTAE">
+ <descriptor>
+ <import location="../analysis_engine/SideEffectAggregateTAE.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ </casProcessor>
+ <casProcessor deployment="integrated" name="SideEffectCasConsumer">
+ <descriptor>
+ <import location="../cas_consumer/SideEffectCasConsumer.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>OutputFile</name>
+ <value>
+ <string>/output_dir/output.txt</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </casProcessor>
+ <casProcessor deployment="integrated" name="XCAS Writer CAS Consumer">
+ <descriptor>
+ <import location="../../../ctakes-core/desc/cas_consumer/XCasWriterCasConsumer.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>OutputDirectory</name>
+ <value>
+ <string>/output_dir/xcas</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </casProcessor>
+ </casProcessors>
+ <cpeConfig>
+ <numToProcess>-1</numToProcess>
+ <deployAs>immediate</deployAs>
+ <checkpoint batch="0" time="300000"/>
+ <timerImpl/>
+ </cpeConfig>
+</cpeDescription>
Propchange: incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectCPE.xml
------------------------------------------------------------------------------
svn:eol-style = native
Added: incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentenceCPE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentenceCPE.xml?rev=1431015&view=auto
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentenceCPE.xml (added)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentenceCPE.xml Wed Jan 9 19:15:52 2013
@@ -0,0 +1,78 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <collectionReader>
+ <collectionIterator>
+ <descriptor>
+ <import location="../../../ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml"/>
+ </descriptor>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>InputDirectory</name>
+ <value>
+ <string>/Volumes/bmi/Dept/projects/Text/Outcomes/data/manual_annotations/round3/texts</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </collectionIterator>
+ </collectionReader>
+ <casProcessors casPoolSize="3" processingUnitThreadCount="1">
+ <casProcessor deployment="integrated" name="SideEffectSentenceAggregateTAE">
+ <descriptor>
+ <import location="../analysis_engine/SideEffectSentenceAggregateTAE.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ </casProcessor>
+ <casProcessor deployment="integrated" name="SideEffectSentenceCasConsumer">
+ <descriptor>
+ <import location="../cas_consumer/SideEffectSentenceCasConsumer.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>OutputFile</name>
+ <value>
+ <string>/Volumes/bmi/Dept/projects/Text/Outcomes/data/manual_annotations/round3/texts/out/sideEffectsSentence.txt</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </casProcessor>
+ </casProcessors>
+ <cpeConfig>
+ <numToProcess>-1</numToProcess>
+ <deployAs>immediate</deployAs>
+ <checkpoint batch="0" time="300000"/>
+ <timerImpl/>
+ </cpeConfig>
+</cpeDescription>
Propchange: incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentenceCPE.xml
------------------------------------------------------------------------------
svn:eol-style = native
Added: incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentence_CDA_CPE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentence_CDA_CPE.xml?rev=1431015&view=auto
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentence_CDA_CPE.xml (added)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentence_CDA_CPE.xml Wed Jan 9 19:15:52 2013
@@ -0,0 +1,78 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <collectionReader>
+ <collectionIterator>
+ <descriptor>
+ <import location="../../../ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml"/>
+ </descriptor>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>InputDirectory</name>
+ <value>
+ <string>/Volumes/bmi/Dept/projects/Text/Outcomes/data/manual_annotations/round3/texts</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </collectionIterator>
+ </collectionReader>
+ <casProcessors casPoolSize="3" processingUnitThreadCount="1">
+ <casProcessor deployment="integrated" name="SideEffectSentenceAggregateTAE">
+ <descriptor>
+ <import location="../analysis_engine/SideEffectSentenceAggregate_CDA_TAE.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ </casProcessor>
+ <casProcessor deployment="integrated" name="SideEffectSentenceCasConsumer">
+ <descriptor>
+ <import location="../cas_consumer/SideEffectSentenceCasConsumer.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>OutputFile</name>
+ <value>
+ <string>/Volumes/bmi/Dept/projects/Text/Outcomes/data/manual_annotations/round3/texts/out/sideEffectsSentence.txt</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </casProcessor>
+ </casProcessors>
+ <cpeConfig>
+ <numToProcess>-1</numToProcess>
+ <deployAs>immediate</deployAs>
+ <checkpoint batch="0" time="300000"/>
+ <timerImpl/>
+ </cpeConfig>
+</cpeDescription>
Propchange: incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffectSentence_CDA_CPE.xml
------------------------------------------------------------------------------
svn:eol-style = native
Added: incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffect_CDA_CPE.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffect_CDA_CPE.xml?rev=1431015&view=auto
==============================================================================
--- incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffect_CDA_CPE.xml (added)
+++ incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffect_CDA_CPE.xml Wed Jan 9 19:15:52 2013
@@ -0,0 +1,98 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+
+ Licensed to the Apache Software Foundation (ASF) under one
+ or more contributor license agreements. See the NOTICE file
+ distributed with this work for additional information
+ regarding copyright ownership. The ASF licenses this file
+ to you under the Apache License, Version 2.0 (the
+ "License"); you may not use this file except in compliance
+ with the License. You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing,
+ software distributed under the License is distributed on an
+ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ KIND, either express or implied. See the License for the
+ specific language governing permissions and limitations
+ under the License.
+
+-->
+<cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+ <collectionReader>
+ <collectionIterator>
+ <descriptor>
+ <import location="../../../ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml"/>
+ </descriptor>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>InputDirectory</name>
+ <value>
+ <string>/dir_with_input_files</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </collectionIterator>
+ </collectionReader>
+ <casProcessors casPoolSize="3" processingUnitThreadCount="1">
+ <casProcessor deployment="integrated" name="SideEffectAggregateTAE">
+ <descriptor>
+ <import location="../analysis_engine/SideEffectAggregate_CDA_TAE.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ </casProcessor>
+ <casProcessor deployment="integrated" name="SideEffectCasConsumer">
+ <descriptor>
+ <import location="../cas_consumer/SideEffectCasConsumer.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>OutputFile</name>
+ <value>
+ <string>/output_dir/output.txt</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </casProcessor>
+ <casProcessor deployment="integrated" name="XCAS Writer CAS Consumer">
+ <descriptor>
+ <import location="../../../ctakes-core/desc/cas_consumer/XCasWriterCasConsumer.xml"/>
+ </descriptor>
+ <deploymentParameters/>
+ <errorHandling>
+ <errorRateThreshold action="terminate" value="0/1000"/>
+ <maxConsecutiveRestarts action="terminate" value="30"/>
+ <timeout max="100000" default="-1"/>
+ </errorHandling>
+ <checkpoint batch="10000" time="1000ms"/>
+ <configurationParameterSettings>
+ <nameValuePair>
+ <name>OutputDirectory</name>
+ <value>
+ <string>/output_dir/xcas</string>
+ </value>
+ </nameValuePair>
+ </configurationParameterSettings>
+ </casProcessor>
+ </casProcessors>
+ <cpeConfig>
+ <numToProcess>-1</numToProcess>
+ <deployAs>immediate</deployAs>
+ <checkpoint batch="0" time="300000"/>
+ <timerImpl/>
+ </cpeConfig>
+</cpeDescription>
Propchange: incubator/ctakes/trunk/ctakes-side-effect/desc/collection_processing_engine/SideEffect_CDA_CPE.xml
------------------------------------------------------------------------------
svn:eol-style = native