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Posted to issues@airavata.apache.org by "srirampc (via GitHub)" <gi...@apache.org> on 2024/08/29 20:12:16 UTC

[PR] Connections to cell type and abc databases [airavata-cerebrum]

srirampc opened a new pull request, #23:
URL: https://github.com/apache/airavata-cerebrum/pull/23

   Addresses issues #17 and #18 : 
   - Added Query classes to query cell type data from Allen Cell Feature databases using AllenSDK
   - Added Query classes to query  neuron type rations from Allen Brain Cell Atlas using ABC Cache 
   - Implement a workflow that (a) downloads data , (b) applies transformations on the data, (c) Build a model driven by the data and (d) save the model as a SONATA file
   - Functionality to configure the workflow using json configuration files: 
   - Save model descriptions and the configurations.


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Re: [PR] Connections to cell type and abc databases [airavata-cerebrum]

Posted by "DImuthuUpe (via GitHub)" <gi...@apache.org>.
DImuthuUpe merged PR #23:
URL: https://github.com/apache/airavata-cerebrum/pull/23


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