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Posted to dev@climate.apache.org by "Lewis John McGibbney (JIRA)" <ji...@apache.org> on 2017/04/18 20:11:41 UTC
[jira] [Updated] (CLIMATE-906) Fix tests in master (podaacpy
integrtion)
[ https://issues.apache.org/jira/browse/CLIMATE-906?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Lewis John McGibbney updated CLIMATE-906:
-----------------------------------------
Summary: Fix tests in master (podaacpy integrtion) (was: Fix tests in master)
> Fix tests in master (podaacpy integrtion)
> -----------------------------------------
>
> Key: CLIMATE-906
> URL: https://issues.apache.org/jira/browse/CLIMATE-906
> Project: Apache Open Climate Workbench
> Issue Type: Bug
> Components: data sources
> Reporter: Lewis John McGibbney
> Assignee: Lewis John McGibbney
> Fix For: 1.2.0
>
>
> It looks like the tests broke a while back in master.
> {code}
> ======================================================================
> ERROR: test_temporal_subset_attributes (ocw.tests.test_dataset_processor.TestTemporalSubset)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/build/apache/climate/ocw/tests/test_dataset_processor.py", line 67, in test_temporal_subset_attributes
> average_each_year=True)
> File "/home/travis/build/apache/climate/ocw/dataset_processor.py", line 83, in temporal_subset
> averaged_values = ma.zeros([nyear, ny, nx])
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/site-packages/numpy/ma/core.py", line 7887, in __call__
> result = self._func.__call__(*args, **params).view(MaskedArray)
> TypeError: 'float' object cannot be interpreted as an integer
> ======================================================================
> ERROR: test_temporal_subset_equal_start_end_month (ocw.tests.test_dataset_processor.TestTemporalSubset)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/build/apache/climate/ocw/tests/test_dataset_processor.py", line 82, in test_temporal_subset_equal_start_end_month
> average_each_year=True)
> File "/home/travis/build/apache/climate/ocw/dataset_processor.py", line 83, in temporal_subset
> averaged_values = ma.zeros([nyear, ny, nx])
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/site-packages/numpy/ma/core.py", line 7887, in __call__
> result = self._func.__call__(*args, **params).view(MaskedArray)
> TypeError: 'float' object cannot be interpreted as an integer
> ======================================================================
> ERROR: test_temporal_subset_with_average_time (ocw.tests.test_dataset_processor.TestTemporalSubset)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/build/apache/climate/ocw/tests/test_dataset_processor.py", line 50, in test_temporal_subset_with_average_time
> average_each_year=True)
> File "/home/travis/build/apache/climate/ocw/dataset_processor.py", line 83, in temporal_subset
> averaged_values = ma.zeros([nyear, ny, nx])
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/site-packages/numpy/ma/core.py", line 7887, in __call__
> result = self._func.__call__(*args, **params).view(MaskedArray)
> TypeError: 'float' object cannot be interpreted as an integer
> ======================================================================
> ERROR: test_temporal_subset_with_average_values (ocw.tests.test_dataset_processor.TestTemporalSubset)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/build/apache/climate/ocw/tests/test_dataset_processor.py", line 57, in test_temporal_subset_with_average_values
> average_each_year=True)
> File "/home/travis/build/apache/climate/ocw/dataset_processor.py", line 83, in temporal_subset
> averaged_values = ma.zeros([nyear, ny, nx])
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/site-packages/numpy/ma/core.py", line 7887, in __call__
> result = self._func.__call__(*args, **params).view(MaskedArray)
> TypeError: 'float' object cannot be interpreted as an integer
> ======================================================================
> ERROR: test suite for <class 'ocw.tests.test_podaac.TestPodaacDataSource'>
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/site-packages/nose/suite.py", line 210, in run
> self.setUp()
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/site-packages/nose/suite.py", line 293, in setUp
> self.setupContext(ancestor)
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/site-packages/nose/suite.py", line 316, in setupContext
> try_run(context, names)
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/site-packages/nose/util.py", line 471, in try_run
> return func()
> File "/home/travis/build/apache/climate/ocw/tests/test_podaac.py", line 36, in setUpClass
> cls.variable, cls.datasetId, cls.name)
> File "/home/travis/build/apache/climate/ocw/data_source/podaac_datasource.py", line 103, in load_level4_granule
> dataset_id=datasetId, path=path)
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/site-packages/podaac/podaac.py", line 594, in extract_l4_granule
> granule_name = granule_name.split('\t')[3][:-1]
> IndexError: list index out of range
> -------------------- >> begin captured logging << --------------------
> requests.packages.urllib3.connectionpool: DEBUG: Starting new HTTP connection (1): podaac.jpl.nasa.gov
> requests.packages.urllib3.connectionpool: DEBUG: http://podaac.jpl.nasa.gov:80 "GET /ws/search/granule/?datasetId=PODAAC-GHCMC-4FM02&startIndex=1&sortBy=timeAsc&itemsPerPage=7&format=atom&pretty=True HTTP/1.1" 302 346
> requests.packages.urllib3.connectionpool: DEBUG: Starting new HTTPS connection (1): podaac.jpl.nasa.gov
> requests.packages.urllib3.connectionpool: DEBUG: https://podaac.jpl.nasa.gov:443 "GET /ws/search/granule/?datasetId=PODAAC-GHCMC-4FM02&startIndex=1&sortBy=timeAsc&itemsPerPage=7&format=atom&pretty=True HTTP/1.1" 200 None
> --------------------- >> end captured logging << ---------------------
> ======================================================================
> ERROR: test_calc_climatology_monthly (ocw.tests.test_utils.TestCalcClimatologyMonthly)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/build/apache/climate/ocw/tests/test_utils.py", line 400, in test_calc_climatology_monthly
> self.dataset)
> File "/home/travis/build/apache/climate/ocw/utils.py", line 351, in calc_climatology_monthly
> values = reshape_monthly_to_annually(dataset).mean(axis=0)
> File "/home/travis/build/apache/climate/ocw/utils.py", line 282, in reshape_monthly_to_annually
> values.shape = new_shape
> TypeError: 'float' object cannot be interpreted as an integer
> ======================================================================
> ERROR: test_annually_mean (ocw.tests.test_utils.TestCalcClimatologyYear)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/build/apache/climate/ocw/tests/test_utils.py", line 364, in test_annually_mean
> utils.calc_climatology_year(self.test_dataset)[0], annually_mean)
> File "/home/travis/build/apache/climate/ocw/utils.py", line 318, in calc_climatology_year
> values = reshape_monthly_to_annually(dataset)
> File "/home/travis/build/apache/climate/ocw/utils.py", line 282, in reshape_monthly_to_annually
> values.shape = new_shape
> TypeError: 'float' object cannot be interpreted as an integer
> ======================================================================
> ERROR: test_total_mean (ocw.tests.test_utils.TestCalcClimatologyYear)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/build/apache/climate/ocw/tests/test_utils.py", line 370, in test_total_mean
> utils.calc_climatology_year(self.test_dataset)[1], total_mean)
> File "/home/travis/build/apache/climate/ocw/utils.py", line 318, in calc_climatology_year
> values = reshape_monthly_to_annually(dataset)
> File "/home/travis/build/apache/climate/ocw/utils.py", line 282, in reshape_monthly_to_annually
> values.shape = new_shape
> TypeError: 'float' object cannot be interpreted as an integer
> ======================================================================
> ERROR: test_reshape_full_year (ocw.tests.test_utils.TestReshapeMonthlyToAnnually)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/build/apache/climate/ocw/tests/test_utils.py", line 257, in test_reshape_full_year
> utils.reshape_monthly_to_annually(self.test_dataset), new_values)
> File "/home/travis/build/apache/climate/ocw/utils.py", line 282, in reshape_monthly_to_annually
> values.shape = new_shape
> TypeError: 'float' object cannot be interpreted as an integer
> ======================================================================
> ERROR: test_reshape_not_full_year (ocw.tests.test_utils.TestReshapeMonthlyToAnnually)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/home/travis/build/apache/climate/ocw/tests/test_utils.py", line 269, in test_reshape_not_full_year
> ValueError, utils.reshape_monthly_to_annually, bad_dataset)
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/unittest/case.py", line 728, in assertRaises
> return context.handle('assertRaises', args, kwargs)
> File "/home/travis/miniconda/envs/test-environment/lib/python3.5/unittest/case.py", line 177, in handle
> callable_obj(*args, **kwargs)
> File "/home/travis/build/apache/climate/ocw/utils.py", line 282, in reshape_monthly_to_annually
> values.shape = new_shape
> TypeError: 'float' object cannot be interpreted as an integer
> {code}
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