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Posted to commits@commons.apache.org by er...@apache.org on 2018/01/21 14:05:37 UTC
[02/16] commons-statistics git commit: STATISTICS-2: Migrate
"o.a.c.math4.distribution" from Commons Math.
http://git-wip-us.apache.org/repos/asf/commons-statistics/blob/9c794a15/commons-statistics-distribution/src/test/resources/org/apache/commons/statistics/distribution/gamma-distribution.mac
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diff --git a/commons-statistics-distribution/src/test/resources/org/apache/commons/statistics/distribution/gamma-distribution.mac b/commons-statistics-distribution/src/test/resources/org/apache/commons/statistics/distribution/gamma-distribution.mac
new file mode 100644
index 0000000..d9ce678
--- /dev/null
+++ b/commons-statistics-distribution/src/test/resources/org/apache/commons/statistics/distribution/gamma-distribution.mac
@@ -0,0 +1,73 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements. See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License. You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+/*
+ * This Maxima script allows the creation of reference data for the Gamma
+ * distribution.
+ */
+
+/*
+ * Set floating-point accuracy to four times the double precision.
+ */
+fpprec : 64;
+
+/*
+ * Probability density function for Gamma distribution with shape parameter a
+ * and scale parameter b.
+ */
+p(x, a, b) := (x / b)**a * exp(-x / b) / x / gamma(a);
+
+/*
+ * Make sure x is a list of exactly representable doubles: use only power-of-two
+ * fractions of unity.
+ */
+out : openw("gamma-distribution-shape-1.csv");
+x : float(makelist(i / 32, i, 1, 3200));
+y : p(bfloat(x), 1, 1);
+printf(out, "~{~h, ~h~%~}", join(x, y));
+close(out);
+
+out : openw("gamma-distribution-shape-8.csv");
+x : float(makelist(i / 32, i, 1, 3200));
+y : p(bfloat(x), 8, 1);
+printf(out, "~{~h, ~h~%~}", join(x, y));
+close(out);
+
+out : openw("gamma-distribution-shape-10.csv");
+x : float(makelist(i / 4, i, 1, 400));
+y : p(bfloat(x), 10, 1);
+printf(out, "~{~h, ~h~%~}", join(x, y));
+close(out);
+
+out : openw("gamma-distribution-shape-100.csv");
+x : float(append(makelist(i / 32, i, 1, 32 * 3), makelist(i + 3, i, 1, 297)));
+y : p(bfloat(x), 100, 1);
+printf(out, "~{~h, ~h~%~}", join(x, y));
+close(out);
+
+out : openw("gamma-distribution-shape-142.csv");
+x : float(append(makelist(i / 32, i, 1, 32 * 10), makelist(i + 10, i, 1, 440)));
+y : p(bfloat(x), 142, 1);
+printf(out, "~{~h, ~h~%~}", join(x, y));
+close(out);
+
+out : openw("gamma-distribution-shape-1000.csv");
+x : float(append(makelist(i / 32, i, 1, 32 * 10), makelist(i + 10, i, 1, 2990)));
+y : p(bfloat(x), 1000, 1);
+printf(out, "~{~h, ~h~%~}", join(x, y));
+close(out);
+
http://git-wip-us.apache.org/repos/asf/commons-statistics/blob/9c794a15/commons-statistics-distribution/src/test/resources/org/apache/commons/statistics/distribution/testData.txt
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diff --git a/commons-statistics-distribution/src/test/resources/org/apache/commons/statistics/distribution/testData.txt b/commons-statistics-distribution/src/test/resources/org/apache/commons/statistics/distribution/testData.txt
new file mode 100644
index 0000000..4a10132
--- /dev/null
+++ b/commons-statistics-distribution/src/test/resources/org/apache/commons/statistics/distribution/testData.txt
@@ -0,0 +1,1000 @@
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http://git-wip-us.apache.org/repos/asf/commons-statistics/blob/9c794a15/pom.xml
----------------------------------------------------------------------
diff --git a/pom.xml b/pom.xml
index 3422571..39cae27 100644
--- a/pom.xml
+++ b/pom.xml
@@ -29,7 +29,7 @@
<version>0.1-SNAPSHOT</version>
<name>Apache Commons Statistics</name>
- <inceptionYear>2016</inceptionYear>
+ <inceptionYear>2018</inceptionYear>
<description>The Apache Commons Statistics project provides tools for statistics.</description>
<url>http://commons.apache.org/proper/commons-statistics/</url>
@@ -63,15 +63,6 @@
<contributors>
</contributors>
- <dependencies>
- <dependency>
- <groupId>junit</groupId>
- <artifactId>junit</artifactId>
- <version>4.12</version>
- <scope>test</scope>
- </dependency>
- </dependencies>
-
<properties>
<!-- Do not change: "statistics" is the name of the component even if the
name of the base package evolves with major release numbers
@@ -128,8 +119,60 @@
Temporary workaround?
-->
<commons.release.name>commons-statistics-${project.version}</commons.release.name>
+ <statistics.commons.rng.version>1.0</statistics.commons.rng.version>
+ <statistics.commons.numbers.version>1.0-SNAPSHOT</statistics.commons.numbers.version> <!-- XXX -->
+ <statistics.commons.math3.version>3.6.1</statistics.commons.math3.version>
</properties>
+ <dependencyManagement>
+ <dependencies>
+ <dependency>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>commons-rng-client-api</artifactId>
+ <version>${statistics.commons.rng.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>commons-rng-simple</artifactId>
+ <version>${statistics.commons.rng.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>commons-rng-sampling</artifactId>
+ <version>1.1-SNAPSHOT</version> <!-- XXX -->
+ </dependency>
+ <dependency>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>commons-numbers-core</artifactId>
+ <version>${statistics.commons.numbers.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>commons-numbers-combinatorics</artifactId>
+ <version>${statistics.commons.numbers.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>commons-numbers-gamma</artifactId>
+ <version>${statistics.commons.numbers.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>commons-math3</artifactId>
+ <version>${statistics.commons.math3.version}</version>
+ </dependency>
+ </dependencies>
+ </dependencyManagement>
+
+ <dependencies>
+ <dependency>
+ <groupId>junit</groupId>
+ <artifactId>junit</artifactId>
+ <version>4.12</version>
+ <scope>test</scope>
+ </dependency>
+ </dependencies>
+
<build>
<plugins>
<plugin>
@@ -535,7 +578,7 @@
</profiles>
<modules>
-<!-- <module>commons-statistics-distribution</module> -->
+ <module>commons-statistics-distribution</module>
<!-- <module>commons-statistics-regression</module> -->
</modules>