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Posted to issues@beam.apache.org by "Pawel Pasterz (Jira)" <ji...@apache.org> on 2020/05/26 10:40:00 UTC
[jira] [Updated] (BEAM-10084) XML IO java tests failing [Java 11]
[ https://issues.apache.org/jira/browse/BEAM-10084?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Pawel Pasterz updated BEAM-10084:
---------------------------------
Parent: BEAM-10090
Issue Type: Sub-task (was: Improvement)
> XML IO java tests failing [Java 11]
> -----------------------------------
>
> Key: BEAM-10084
> URL: https://issues.apache.org/jira/browse/BEAM-10084
> Project: Beam
> Issue Type: Sub-task
> Components: io-java-xml
> Reporter: Pawel Pasterz
> Priority: P2
>
> Gradle task :sdks:java:io:xml:test fails during Java 11 Precommit job
> Example stack trace:
> {code:java}
> > Task :sdks:java:io:xml:test
> org.apache.beam.sdk.io.xml.XmlIOTest > testWriteThenReadLarger STANDARD_ERROR
> May 26, 2020 7:29:37 AM org.apache.beam.sdk.io.WriteFiles$WriteShardsIntoTempFilesFn processElement
> INFO: Opening writer 4c054a13-7ff7-4b54-9398-f6bd6e531aff for window org.apache.beam.sdk.transforms.windowing.GlobalWindow@5967d09d pane PaneInfo{isFirst=true, isLast=true, timing=ON_TIME, index=0, onTimeIndex=0} destination null
> May 26, 2020 7:29:37 AM org.apache.beam.sdk.io.FileBasedSink$Writer open
> SEVERE: Beginning write to failed, closing channel.
> java.io.IOException: javax.xml.bind.JAXBException
> - with linked exception:
> [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
> at org.apache.beam.sdk.io.xml.XmlIO$Sink.open(XmlIO.java:664)
> at org.apache.beam.sdk.io.FileIO$Write$ViaFileBasedSink$1$1.prepareWrite(FileIO.java:1390)
> at org.apache.beam.sdk.io.FileBasedSink$Writer.open(FileBasedSink.java:952)
> at org.apache.beam.sdk.io.WriteFiles$WriteShardsIntoTempFilesFn.processElement(WriteFiles.java:769)
> at org.apache.beam.sdk.io.WriteFiles$WriteShardsIntoTempFilesFn$DoFnInvoker.invokeProcessElement(Unknown Source)
> at org.apache.beam.repackaged.direct_java.runners.core.SimpleDoFnRunner.invokeProcessElement(SimpleDoFnRunner.java:227)
> at org.apache.beam.repackaged.direct_java.runners.core.SimpleDoFnRunner.processElement(SimpleDoFnRunner.java:183)
> at org.apache.beam.repackaged.direct_java.runners.core.SimplePushbackSideInputDoFnRunner.processElementInReadyWindows(SimplePushbackSideInputDoFnRunner.java:78)
> at org.apache.beam.runners.direct.ParDoEvaluator.processElement(ParDoEvaluator.java:240)
> at org.apache.beam.runners.direct.DoFnLifecycleManagerRemovingTransformEvaluator.processElement(DoFnLifecycleManagerRemovingTransformEvaluator.java:54)
> at org.apache.beam.runners.direct.DirectTransformExecutor.processElements(DirectTransformExecutor.java:160)
> at org.apache.beam.runners.direct.DirectTransformExecutor.run(DirectTransformExecutor.java:124)
> at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
> at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
> at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
> at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
> at java.base/java.lang.Thread.run(Thread.java:834)
> Caused by: javax.xml.bind.JAXBException
> - with linked exception:
> [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
> at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
> at org.apache.beam.sdk.io.xml.XmlIO$Sink.open(XmlIO.java:659)
> ... 16 more
> Caused by: java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
> at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
> at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
> at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:521)
> at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
> ... 20 more
> org.apache.beam.sdk.io.xml.XmlIOTest > testWriteThenReadLarger FAILED
> org.apache.beam.sdk.Pipeline$PipelineExecutionException: java.io.IOException: javax.xml.bind.JAXBException
> - with linked exception:
> [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
> at org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:348)
> at org.apache.beam.runners.direct.DirectRunner$DirectPipelineResult.waitUntilFinish(DirectRunner.java:318)
> at org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:213)
> at org.apache.beam.runners.direct.DirectRunner.run(DirectRunner.java:67)
> at org.apache.beam.sdk.Pipeline.run(Pipeline.java:317)
> at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:350)
> at org.apache.beam.sdk.testing.TestPipeline.run(TestPipeline.java:331)
> at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenReadLarger(XmlIOTest.java:159)
> Caused by:
> java.io.IOException: javax.xml.bind.JAXBException
> - with linked exception:
> [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
> Caused by:
> javax.xml.bind.JAXBException
> - with linked exception:
> [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
> Caused by:
> java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
> org.apache.beam.sdk.io.xml.XmlIOTest > testXmlWriteThenReadViaSinkAndReadFilesUTF8 FAILED
> java.lang.RuntimeException: Error when creating marshaller from JAXB Context.
> at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:65)
> at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:58)
> at java.lang.ThreadLocal.setInitialValue(ThreadLocal.java:195)
> at java.lang.ThreadLocal.get(ThreadLocal.java:172)
> at org.apache.beam.sdk.io.xml.JAXBCoder.encode(JAXBCoder.java:108)
> at org.apache.beam.sdk.io.xml.JAXBCoder.encode(JAXBCoder.java:94)
> at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:114)
> at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:60)
> at org.apache.beam.sdk.coders.Coder.encode(Coder.java:136)
> at org.apache.beam.sdk.util.CoderUtils.encodeToSafeStream(CoderUtils.java:82)
> at org.apache.beam.sdk.util.CoderUtils.encodeToByteArray(CoderUtils.java:66)
> at org.apache.beam.sdk.util.CoderUtils.encodeToByteArray(CoderUtils.java:51)
> at org.apache.beam.sdk.testing.PAssert$CheckRelationAgainstExpected.<init>(PAssert.java:1136)
> at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.satisfies(PAssert.java:639)
> at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.containsInAnyOrder(PAssert.java:600)
> at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.containsInAnyOrder(PAssert.java:516)
> at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenRead(XmlIOTest.java:110)
> at org.apache.beam.sdk.io.xml.XmlIOTest.testXmlWriteThenReadViaSinkAndReadFilesUTF8(XmlIOTest.java:69)
> Caused by:
> javax.xml.bind.JAXBException
> - with linked exception:
> [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
> at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
> at org.apache.beam.sdk.io.xml.JAXBCoder.getContext(JAXBCoder.java:141)
> at org.apache.beam.sdk.io.xml.JAXBCoder.access$000(JAXBCoder.java:44)
> at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:62)
> ... 17 more
> Caused by:
> java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
> at jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
> at jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:521)
> at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
> ... 23 more
> org.apache.beam.sdk.io.xml.XmlIOTest > testXmlWriteThenReadViaWriteAndReadISO8859 FAILED
> java.lang.RuntimeException: Error binding classes to a JAXB Context.
> at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:530)
> at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:463)
> at org.apache.beam.sdk.Pipeline.applyInternal(Pipeline.java:542)
> at org.apache.beam.sdk.Pipeline.applyTransform(Pipeline.java:476)
> at org.apache.beam.sdk.values.PCollection.apply(PCollection.java:355)
> at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenRead(XmlIOTest.java:118)
> at org.apache.beam.sdk.io.xml.XmlIOTest.testXmlWriteThenReadViaWriteAndReadISO8859(XmlIOTest.java:84)
> Caused by:
> javax.xml.bind.JAXBException
> - with linked exception:
> [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
> at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
> at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:528)
> ... 6 more
> Caused by:
> java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
> at jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
> at jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:521)
> at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
> ... 10 more
> org.apache.beam.sdk.io.xml.XmlIOTest > testXmlWriteThenReadViaSinkAndReadFilesISO8859 FAILED
> java.lang.RuntimeException: Error when creating marshaller from JAXB Context.
> at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:65)
> at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:58)
> at java.lang.ThreadLocal.setInitialValue(ThreadLocal.java:195)
> at java.lang.ThreadLocal.get(ThreadLocal.java:172)
> at org.apache.beam.sdk.io.xml.JAXBCoder.encode(JAXBCoder.java:108)
> at org.apache.beam.sdk.io.xml.JAXBCoder.encode(JAXBCoder.java:94)
> at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:114)
> at org.apache.beam.sdk.coders.IterableLikeCoder.encode(IterableLikeCoder.java:60)
> at org.apache.beam.sdk.coders.Coder.encode(Coder.java:136)
> at org.apache.beam.sdk.util.CoderUtils.encodeToSafeStream(CoderUtils.java:82)
> at org.apache.beam.sdk.util.CoderUtils.encodeToByteArray(CoderUtils.java:66)
> at org.apache.beam.sdk.util.CoderUtils.encodeToByteArray(CoderUtils.java:51)
> at org.apache.beam.sdk.testing.PAssert$CheckRelationAgainstExpected.<init>(PAssert.java:1136)
> at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.satisfies(PAssert.java:639)
> at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.containsInAnyOrder(PAssert.java:600)
> at org.apache.beam.sdk.testing.PAssert$PCollectionContentsAssert.containsInAnyOrder(PAssert.java:516)
> at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenRead(XmlIOTest.java:110)
> at org.apache.beam.sdk.io.xml.XmlIOTest.testXmlWriteThenReadViaSinkAndReadFilesISO8859(XmlIOTest.java:74)
> Caused by:
> javax.xml.bind.JAXBException
> - with linked exception:
> [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
> at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
> at org.apache.beam.sdk.io.xml.JAXBCoder.getContext(JAXBCoder.java:141)
> at org.apache.beam.sdk.io.xml.JAXBCoder.access$000(JAXBCoder.java:44)
> at org.apache.beam.sdk.io.xml.JAXBCoder$1.initialValue(JAXBCoder.java:62)
> ... 17 more
> Caused by:
> java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
> at jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
> at jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:521)
> at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
> ... 23 more
> org.apache.beam.sdk.io.xml.XmlIOTest > testXmlWriteThenReadViaWriteAndReadUTF8 FAILED
> java.lang.RuntimeException: Error binding classes to a JAXB Context.
> at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:530)
> at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:463)
> at org.apache.beam.sdk.Pipeline.applyInternal(Pipeline.java:542)
> at org.apache.beam.sdk.Pipeline.applyTransform(Pipeline.java:476)
> at org.apache.beam.sdk.values.PCollection.apply(PCollection.java:355)
> at org.apache.beam.sdk.io.xml.XmlIOTest.testWriteThenRead(XmlIOTest.java:118)
> at org.apache.beam.sdk.io.xml.XmlIOTest.testXmlWriteThenReadViaWriteAndReadUTF8(XmlIOTest.java:79)
> Caused by:
> javax.xml.bind.JAXBException
> - with linked exception:
> [java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory]
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:241)
> at javax.xml.bind.ContextFinder.find(ContextFinder.java:477)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:656)
> at javax.xml.bind.JAXBContext.newInstance(JAXBContext.java:599)
> at org.apache.beam.sdk.io.xml.XmlIO$Write.expand(XmlIO.java:528)
> ... 6 more
> Caused by:
> java.lang.ClassNotFoundException: com.sun.xml.internal.bind.v2.ContextFactory
> at jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
> at jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:521)
> at javax.xml.bind.ContextFinder.safeLoadClass(ContextFinder.java:594)
> at javax.xml.bind.ContextFinder.newInstance(ContextFinder.java:239)
> ... 10 more
> org.apache.beam.sdk.io.xml.XmlSourceTest > testReadXMLWithMultiByteElementName SKIPPED
> Gradle Test Executor 146 started executing tests.
> {code}
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