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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 12:47:01 UTC
[34/50] [abbrv] incubator-taverna-plugin-bioinformatics git commit:
taverna-ncbi-activity-ui/
taverna-ncbi-activity-ui/
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/commit/d09f5af9
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/tree/d09f5af9
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/diff/d09f5af9
Branch: refs/heads/master
Commit: d09f5af9aa4a3233f39b939b0185cac1026215ba
Parents: c39009c
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Mon Feb 2 09:50:18 2015 +0000
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Mon Feb 2 09:55:09 2015 +0000
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.gitignore | 24 ---------
.travis.yml | 1 -
README.md | 5 --
pom.xml | 49 -------------------
.../spring/ncbi-activity-ui-context-osgi.xml | 9 ----
.../spring/ncbi-activity-ui-context.xml | 6 ---
src/main/resources/ncbi_services | 0
src/main/resources/wsdl.png | Bin 748 -> 0 bytes
taverna-ncbi-activity-ui/pom.xml | 49 +++++++++++++++++++
.../spring/ncbi-activity-ui-context-osgi.xml | 9 ++++
.../spring/ncbi-activity-ui-context.xml | 6 +++
.../src/main/resources/ncbi_services | 0
.../src/main/resources/wsdl.png | Bin 0 -> 748 bytes
13 files changed, 64 insertions(+), 94 deletions(-)
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http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/.gitignore
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diff --git a/.gitignore b/.gitignore
deleted file mode 100644
index ebe0e5b..0000000
--- a/.gitignore
+++ /dev/null
@@ -1,24 +0,0 @@
-# ignore project files #
-.classpath
-.project
-.settings/
-catalog-v001.xml
-
-# ignore target files #
-target/
-bin/
-build/
-dist/
-apidoc/
-*.swp
-
-# ignore svn files if there
-.svn
-
-# ignore log files #
-*.log
-/logs/*
-*/logs/*
-
-
-
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/.travis.yml
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diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index dff5f3a..0000000
--- a/.travis.yml
+++ /dev/null
@@ -1 +0,0 @@
-language: java
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/README.md
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diff --git a/README.md b/README.md
deleted file mode 100644
index 8176a37..0000000
--- a/README.md
+++ /dev/null
@@ -1,5 +0,0 @@
-Taverna Workflow system NCBI Activity: User Interface part for use in the Taverna Workbench.
-
-Does not have a directly corresponding activity repository
-
-This code was previously hosted at http://taverna.googlecode.com/svn/taverna/ui/net.sf.taverna.t2.ui-activities/
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/pom.xml
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diff --git a/pom.xml b/pom.xml
deleted file mode 100644
index 0a8a983..0000000
--- a/pom.xml
+++ /dev/null
@@ -1,49 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
- <modelVersion>4.0.0</modelVersion>
- <parent>
- <groupId>net.sf.taverna</groupId>
- <artifactId>taverna-parent</artifactId>
- <version>3.0.1-SNAPSHOT</version>
- </parent>
- <groupId>net.sf.taverna.t2.ui-activities</groupId>
- <artifactId>ncbi-activity-ui</artifactId>
- <name>Taverna 2 NCBI web service Activity UI</name>
- <dependencies>
- <dependency>
- <groupId>junit</groupId>
- <artifactId>junit</artifactId>
- <version>${junit.version}</version>
- <scope>test</scope>
- </dependency>
- <dependency>
- <groupId>net.sf.taverna.t2.activities</groupId>
- <artifactId>wsdl-activity</artifactId>
- <version>${t2.activities.version}</version>
- </dependency>
-
- <!-- testing dependencies -->
- </dependencies>
- <repositories>
- <repository>
- <releases />
- <snapshots>
- <enabled>false</enabled>
- </snapshots>
- <id>mygrid-repository</id>
- <name>myGrid Repository</name>
- <url>http://www.mygrid.org.uk/maven/repository</url>
- </repository>
- <repository>
- <releases>
- <enabled>false</enabled>
- </releases>
- <snapshots />
- <id>mygrid-snapshot-repository</id>
- <name>myGrid Snapshot Repository</name>
- <url>http://www.mygrid.org.uk/maven/snapshot-repository</url>
- </repository>
- </repositories>
-
-</project>
-
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml
----------------------------------------------------------------------
diff --git a/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml b/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml
deleted file mode 100644
index 1c13381..0000000
--- a/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<beans:beans xmlns="http://www.springframework.org/schema/osgi" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xmlns:beans="http://www.springframework.org/schema/beans"
- xsi:schemaLocation="http://www.springframework.org/schema/beans
- http://www.springframework.org/schema/beans/spring-beans.xsd
- http://www.springframework.org/schema/osgi
- http://www.springframework.org/schema/osgi/spring-osgi.xsd">
-
-</beans:beans>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml
----------------------------------------------------------------------
diff --git a/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml b/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml
deleted file mode 100644
index 861c878..0000000
--- a/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
- xsi:schemaLocation="http://www.springframework.org/schema/beans
- http://www.springframework.org/schema/beans/spring-beans.xsd">
-
-</beans>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/src/main/resources/ncbi_services
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diff --git a/src/main/resources/ncbi_services b/src/main/resources/ncbi_services
deleted file mode 100644
index e69de29..0000000
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/src/main/resources/wsdl.png
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diff --git a/src/main/resources/wsdl.png b/src/main/resources/wsdl.png
deleted file mode 100644
index f9fdae8..0000000
Binary files a/src/main/resources/wsdl.png and /dev/null differ
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/pom.xml
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diff --git a/taverna-ncbi-activity-ui/pom.xml b/taverna-ncbi-activity-ui/pom.xml
new file mode 100644
index 0000000..0a8a983
--- /dev/null
+++ b/taverna-ncbi-activity-ui/pom.xml
@@ -0,0 +1,49 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+ <parent>
+ <groupId>net.sf.taverna</groupId>
+ <artifactId>taverna-parent</artifactId>
+ <version>3.0.1-SNAPSHOT</version>
+ </parent>
+ <groupId>net.sf.taverna.t2.ui-activities</groupId>
+ <artifactId>ncbi-activity-ui</artifactId>
+ <name>Taverna 2 NCBI web service Activity UI</name>
+ <dependencies>
+ <dependency>
+ <groupId>junit</groupId>
+ <artifactId>junit</artifactId>
+ <version>${junit.version}</version>
+ <scope>test</scope>
+ </dependency>
+ <dependency>
+ <groupId>net.sf.taverna.t2.activities</groupId>
+ <artifactId>wsdl-activity</artifactId>
+ <version>${t2.activities.version}</version>
+ </dependency>
+
+ <!-- testing dependencies -->
+ </dependencies>
+ <repositories>
+ <repository>
+ <releases />
+ <snapshots>
+ <enabled>false</enabled>
+ </snapshots>
+ <id>mygrid-repository</id>
+ <name>myGrid Repository</name>
+ <url>http://www.mygrid.org.uk/maven/repository</url>
+ </repository>
+ <repository>
+ <releases>
+ <enabled>false</enabled>
+ </releases>
+ <snapshots />
+ <id>mygrid-snapshot-repository</id>
+ <name>myGrid Snapshot Repository</name>
+ <url>http://www.mygrid.org.uk/maven/snapshot-repository</url>
+ </repository>
+ </repositories>
+
+</project>
+
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml
----------------------------------------------------------------------
diff --git a/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml b/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml
new file mode 100644
index 0000000..1c13381
--- /dev/null
+++ b/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context-osgi.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<beans:beans xmlns="http://www.springframework.org/schema/osgi" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xmlns:beans="http://www.springframework.org/schema/beans"
+ xsi:schemaLocation="http://www.springframework.org/schema/beans
+ http://www.springframework.org/schema/beans/spring-beans.xsd
+ http://www.springframework.org/schema/osgi
+ http://www.springframework.org/schema/osgi/spring-osgi.xsd">
+
+</beans:beans>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml
----------------------------------------------------------------------
diff --git a/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml b/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml
new file mode 100644
index 0000000..861c878
--- /dev/null
+++ b/taverna-ncbi-activity-ui/src/main/resources/META-INF/spring/ncbi-activity-ui-context.xml
@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://www.springframework.org/schema/beans
+ http://www.springframework.org/schema/beans/spring-beans.xsd">
+
+</beans>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/src/main/resources/ncbi_services
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diff --git a/taverna-ncbi-activity-ui/src/main/resources/ncbi_services b/taverna-ncbi-activity-ui/src/main/resources/ncbi_services
new file mode 100644
index 0000000..e69de29
http://git-wip-us.apache.org/repos/asf/incubator-taverna-plugin-bioinformatics/blob/d09f5af9/taverna-ncbi-activity-ui/src/main/resources/wsdl.png
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diff --git a/taverna-ncbi-activity-ui/src/main/resources/wsdl.png b/taverna-ncbi-activity-ui/src/main/resources/wsdl.png
new file mode 100644
index 0000000..f9fdae8
Binary files /dev/null and b/taverna-ncbi-activity-ui/src/main/resources/wsdl.png differ