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Posted to dev@nutch.apache.org by "Gabriele Kahlout (JIRA)" <ji...@apache.org> on 2011/03/27 11:12:05 UTC

[jira] [Created] (NUTCH-972) Mergedb doesn't merge with empty directory, as is the case with merge (for indexes)

Mergedb doesn't merge with empty directory, as is the case with merge (for indexes)
-----------------------------------------------------------------------------------

                 Key: NUTCH-972
                 URL: https://issues.apache.org/jira/browse/NUTCH-972
             Project: Nutch
          Issue Type: Bug
          Components: storage
    Affects Versions: 1.2
            Reporter: Gabriele Kahlout
            Priority: Minor
             Fix For: 1.3


Just an issue of unexpected behavior. This series of commands works with bin/nutch merge to merge indexes but not with crawldb.

allcrawldb="crawl/allcrawldb"
temp_crawldb="crawl/temp_crawldb"
merge_dbs="$it_crawldb $allcrawldb"
	
#	if [[ ! -d $allcrawldb ]]
#	then
#		merge_dbs="$it_crawldb"
#	fi
# uncomment the above and mergedb will work fine.	
bin/nutch mergedb $temp_crawldb $merge_dbs	
rm -r $it_crawldb $allcrawldb crawl/segments crawl/linkdb
mv $temp_crawldb $allcrawldb

This is the exception that occurs:

bin/nutch mergedb crawl/temp_crawldb crawl/crawldb crawl/allcrawldb
CrawlDb merge: starting at 2011-03-27 10:13:06
Adding crawl/crawldb
Adding crawl/allcrawldb
CrawlDb merge: org.apache.hadoop.mapred.InvalidInputException: Input path does not exist: file:/Users/simpatico/nutch-1.2/crawl/allcrawldb/current
	at org.apache.hadoop.mapred.FileInputFormat.listStatus(FileInputFormat.java:190)
	at org.apache.hadoop.mapred.SequenceFileInputFormat.listStatus(SequenceFileInputFormat.java:44)
	at org.apache.hadoop.mapred.FileInputFormat.getSplits(FileInputFormat.java:201)
	at org.apache.hadoop.mapred.JobClient.writeOldSplits(JobClient.java:810)
	at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:781)
	at org.apache.hadoop.mapred.JobClient.submitJob(JobClient.java:730)
	at org.apache.hadoop.mapred.JobClient.runJob(JobClient.java:1249)
	at org.apache.nutch.crawl.CrawlDbMerger.merge(CrawlDbMerger.java:126)
	at org.apache.nutch.crawl.CrawlDbMerger.run(CrawlDbMerger.java:187)
	at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:65)
	at org.apache.nutch.crawl.CrawlDbMerger.main(CrawlDbMerger.java:159)

Beside the scripting workaround I've attached a patch which skips adding the empty folder to the collection of dbs to merge. I've also added it a log of which dbs actually get added, consistent with merge interface.


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[jira] [Closed] (NUTCH-972) Mergedb doesn't merge with empty directory, as is the case with merge (for indexes)

Posted by "Markus Jelsma (JIRA)" <ji...@apache.org>.
     [ https://issues.apache.org/jira/browse/NUTCH-972?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Markus Jelsma closed NUTCH-972.
-------------------------------


Bulk close of resolved issues for 1.3.

> Mergedb doesn't merge with empty directory, as is the case with merge (for indexes)
> -----------------------------------------------------------------------------------
>
>                 Key: NUTCH-972
>                 URL: https://issues.apache.org/jira/browse/NUTCH-972
>             Project: Nutch
>          Issue Type: Bug
>          Components: storage
>    Affects Versions: 1.2
>            Reporter: Gabriele Kahlout
>            Priority: Minor
>              Labels: patch
>             Fix For: 1.3
>
>         Attachments: check_empty.diff
>
>
> Just an issue of unexpected behavior. This series of commands works with bin/nutch merge to merge indexes but not with crawldb.
> allcrawldb="crawl/allcrawldb"
> temp_crawldb="crawl/temp_crawldb"
> merge_dbs="$it_crawldb $allcrawldb"
> 	
> #	if [[ ! -d $allcrawldb ]]
> #	then
> #		merge_dbs="$it_crawldb"
> #	fi
> # uncomment the above and mergedb will work fine.	
> bin/nutch mergedb $temp_crawldb $merge_dbs	
> rm -r $it_crawldb $allcrawldb crawl/segments crawl/linkdb
> mv $temp_crawldb $allcrawldb
> This is the exception that occurs:
> bin/nutch mergedb crawl/temp_crawldb crawl/crawldb crawl/allcrawldb
> CrawlDb merge: starting at 2011-03-27 10:13:06
> Adding crawl/crawldb
> Adding crawl/allcrawldb
> CrawlDb merge: org.apache.hadoop.mapred.InvalidInputException: Input path does not exist: file:/Users/simpatico/nutch-1.2/crawl/allcrawldb/current
> 	at org.apache.hadoop.mapred.FileInputFormat.listStatus(FileInputFormat.java:190)
> 	at org.apache.hadoop.mapred.SequenceFileInputFormat.listStatus(SequenceFileInputFormat.java:44)
> 	at org.apache.hadoop.mapred.FileInputFormat.getSplits(FileInputFormat.java:201)
> 	at org.apache.hadoop.mapred.JobClient.writeOldSplits(JobClient.java:810)
> 	at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:781)
> 	at org.apache.hadoop.mapred.JobClient.submitJob(JobClient.java:730)
> 	at org.apache.hadoop.mapred.JobClient.runJob(JobClient.java:1249)
> 	at org.apache.nutch.crawl.CrawlDbMerger.merge(CrawlDbMerger.java:126)
> 	at org.apache.nutch.crawl.CrawlDbMerger.run(CrawlDbMerger.java:187)
> 	at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:65)
> 	at org.apache.nutch.crawl.CrawlDbMerger.main(CrawlDbMerger.java:159)
> Beside the scripting workaround I've attached a patch which skips adding the empty folder to the collection of dbs to merge. I've also added it a log of which dbs actually get added, consistent with merge interface.

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[jira] [Updated] (NUTCH-972) Mergedb doesn't merge with empty directory, as is the case with merge (for indexes)

Posted by "Gabriele Kahlout (JIRA)" <ji...@apache.org>.
     [ https://issues.apache.org/jira/browse/NUTCH-972?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Gabriele Kahlout updated NUTCH-972:
-----------------------------------

    Attachment: check_empty.diff

> Mergedb doesn't merge with empty directory, as is the case with merge (for indexes)
> -----------------------------------------------------------------------------------
>
>                 Key: NUTCH-972
>                 URL: https://issues.apache.org/jira/browse/NUTCH-972
>             Project: Nutch
>          Issue Type: Bug
>          Components: storage
>    Affects Versions: 1.2
>            Reporter: Gabriele Kahlout
>            Priority: Minor
>              Labels: patch
>             Fix For: 1.3
>
>         Attachments: check_empty.diff
>
>
> Just an issue of unexpected behavior. This series of commands works with bin/nutch merge to merge indexes but not with crawldb.
> allcrawldb="crawl/allcrawldb"
> temp_crawldb="crawl/temp_crawldb"
> merge_dbs="$it_crawldb $allcrawldb"
> 	
> #	if [[ ! -d $allcrawldb ]]
> #	then
> #		merge_dbs="$it_crawldb"
> #	fi
> # uncomment the above and mergedb will work fine.	
> bin/nutch mergedb $temp_crawldb $merge_dbs	
> rm -r $it_crawldb $allcrawldb crawl/segments crawl/linkdb
> mv $temp_crawldb $allcrawldb
> This is the exception that occurs:
> bin/nutch mergedb crawl/temp_crawldb crawl/crawldb crawl/allcrawldb
> CrawlDb merge: starting at 2011-03-27 10:13:06
> Adding crawl/crawldb
> Adding crawl/allcrawldb
> CrawlDb merge: org.apache.hadoop.mapred.InvalidInputException: Input path does not exist: file:/Users/simpatico/nutch-1.2/crawl/allcrawldb/current
> 	at org.apache.hadoop.mapred.FileInputFormat.listStatus(FileInputFormat.java:190)
> 	at org.apache.hadoop.mapred.SequenceFileInputFormat.listStatus(SequenceFileInputFormat.java:44)
> 	at org.apache.hadoop.mapred.FileInputFormat.getSplits(FileInputFormat.java:201)
> 	at org.apache.hadoop.mapred.JobClient.writeOldSplits(JobClient.java:810)
> 	at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:781)
> 	at org.apache.hadoop.mapred.JobClient.submitJob(JobClient.java:730)
> 	at org.apache.hadoop.mapred.JobClient.runJob(JobClient.java:1249)
> 	at org.apache.nutch.crawl.CrawlDbMerger.merge(CrawlDbMerger.java:126)
> 	at org.apache.nutch.crawl.CrawlDbMerger.run(CrawlDbMerger.java:187)
> 	at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:65)
> 	at org.apache.nutch.crawl.CrawlDbMerger.main(CrawlDbMerger.java:159)
> Beside the scripting workaround I've attached a patch which skips adding the empty folder to the collection of dbs to merge. I've also added it a log of which dbs actually get added, consistent with merge interface.

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[jira] [Resolved] (NUTCH-972) Mergedb doesn't merge with empty directory, as is the case with merge (for indexes)

Posted by "Julien Nioche (JIRA)" <ji...@apache.org>.
     [ https://issues.apache.org/jira/browse/NUTCH-972?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Julien Nioche resolved NUTCH-972.
---------------------------------

    Resolution: Fixed

Committed revision 1090199.

Thanks Gabriele. In the future could you use 'svn diff' to generate patches? See [http://wiki.apache.org/nutch/Becoming_A_Nutch_Developer] for best practices

> Mergedb doesn't merge with empty directory, as is the case with merge (for indexes)
> -----------------------------------------------------------------------------------
>
>                 Key: NUTCH-972
>                 URL: https://issues.apache.org/jira/browse/NUTCH-972
>             Project: Nutch
>          Issue Type: Bug
>          Components: storage
>    Affects Versions: 1.2
>            Reporter: Gabriele Kahlout
>            Priority: Minor
>              Labels: patch
>             Fix For: 1.3
>
>         Attachments: check_empty.diff
>
>
> Just an issue of unexpected behavior. This series of commands works with bin/nutch merge to merge indexes but not with crawldb.
> allcrawldb="crawl/allcrawldb"
> temp_crawldb="crawl/temp_crawldb"
> merge_dbs="$it_crawldb $allcrawldb"
> 	
> #	if [[ ! -d $allcrawldb ]]
> #	then
> #		merge_dbs="$it_crawldb"
> #	fi
> # uncomment the above and mergedb will work fine.	
> bin/nutch mergedb $temp_crawldb $merge_dbs	
> rm -r $it_crawldb $allcrawldb crawl/segments crawl/linkdb
> mv $temp_crawldb $allcrawldb
> This is the exception that occurs:
> bin/nutch mergedb crawl/temp_crawldb crawl/crawldb crawl/allcrawldb
> CrawlDb merge: starting at 2011-03-27 10:13:06
> Adding crawl/crawldb
> Adding crawl/allcrawldb
> CrawlDb merge: org.apache.hadoop.mapred.InvalidInputException: Input path does not exist: file:/Users/simpatico/nutch-1.2/crawl/allcrawldb/current
> 	at org.apache.hadoop.mapred.FileInputFormat.listStatus(FileInputFormat.java:190)
> 	at org.apache.hadoop.mapred.SequenceFileInputFormat.listStatus(SequenceFileInputFormat.java:44)
> 	at org.apache.hadoop.mapred.FileInputFormat.getSplits(FileInputFormat.java:201)
> 	at org.apache.hadoop.mapred.JobClient.writeOldSplits(JobClient.java:810)
> 	at org.apache.hadoop.mapred.JobClient.submitJobInternal(JobClient.java:781)
> 	at org.apache.hadoop.mapred.JobClient.submitJob(JobClient.java:730)
> 	at org.apache.hadoop.mapred.JobClient.runJob(JobClient.java:1249)
> 	at org.apache.nutch.crawl.CrawlDbMerger.merge(CrawlDbMerger.java:126)
> 	at org.apache.nutch.crawl.CrawlDbMerger.run(CrawlDbMerger.java:187)
> 	at org.apache.hadoop.util.ToolRunner.run(ToolRunner.java:65)
> 	at org.apache.nutch.crawl.CrawlDbMerger.main(CrawlDbMerger.java:159)
> Beside the scripting workaround I've attached a patch which skips adding the empty folder to the collection of dbs to merge. I've also added it a log of which dbs actually get added, consistent with merge interface.

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