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Posted to commits@ctakes.apache.org by sp...@apache.org on 2013/01/28 19:06:57 UTC
svn commit: r1439541 -
/incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java
Author: spmurphy50
Date: Mon Jan 28 18:06:57 2013
New Revision: 1439541
URL: http://svn.apache.org/viewvc?rev=1439541&view=rev
Log:
Add fix CTAKE-129 Populate the Drug NER named entity confidence attribute
Modified:
incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java
Modified: incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java
URL: http://svn.apache.org/viewvc/incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java?rev=1439541&r1=1439540&r2=1439541&view=diff
==============================================================================
--- incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java (original)
+++ incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-drug-ner/src/main/java/org/apache/ctakes/drugner/ae/DrugMentionAnnotator.java Mon Jan 28 18:06:57 2013
@@ -387,7 +387,11 @@ public class DrugMentionAnnotator extend
// if (d!=null) d.addToIndexes(); // don't need to be able to get these directly from the AnnotationIndex
if (d!=null) medicationMention.setStartDate(d);
}
-
+ // Add fix CTAKE-129 Populate the Drug NER named entity confidence attribute
+ if (fromAnnotation.getConfidence() != 0.0 ) {
+ medicationMention.setConfidence(fromAnnotation.getConfidence());
+ }
+
// There currently is no endDate in DrugMentionAnnotation
//if (fromAnnotation.getEndDate()!=null) {
//
@@ -730,7 +734,7 @@ public class DrugMentionAnnotator extend
Iterator chkNE = namedE.iterator();
Iterator newNE = wordTokenList.iterator();
boolean neFound = false;
- MedicationEventMention ne = null;
+ // MedicationEventMention ne = null;
WordToken we = null;
Object mt = (Object) measurementTokenItr.next();
if (mt instanceof StrengthUnitToken) {