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Posted to dev@airavata.apache.org by "Saminda Wijeratne (JIRA)" <ji...@apache.org> on 2013/08/15 23:48:05 UTC
[jira] [Resolved] (AIRAVATA-820) Parameter mismatching when using
ForEach
[ https://issues.apache.org/jira/browse/AIRAVATA-820?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Saminda Wijeratne resolved AIRAVATA-820.
----------------------------------------
Resolution: Fixed
> Parameter mismatching when using ForEach
> -----------------------------------------
>
> Key: AIRAVATA-820
> URL: https://issues.apache.org/jira/browse/AIRAVATA-820
> Project: Airavata
> Issue Type: Bug
> Reporter: Shinyoung Ahn
>
> When an application have three parameters, fir and second parameter's type is String type and
> the third parameter is StringArray type.
> Third parameter is connected to ForEach.
> When I execute the applications
> Airavat show unexpected behavior like below. 'Invoking service' do not use right value that I expected…
> I expect the input parameters’ values of bwa_aln_fwd_p_invoke are same with the parameter of 'WorkflowInvoked'.
> The Notification Message as follows
> -----------------------------------------------------------------------------------------------------------------
> Status'workflowInvoked'
> <ns:workflowInvoked infoModelVersion="2.6"
> xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08">
> <ns:notificationSource ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8" ns:experimentID="Workflow1_b8721d2f-d131-4ec3-bbb3-6fe12f528ed8" />
> <ns:timestamp>2013-04-11T09:15:41.988+09:00</ns:timestamp>
> <ns:description>thread=4, refIndexFile=/home/team/genome/bwaindex/chr22.fa, Input=/home/team/genome/Demo/sample_1.fq.00,/home/team/genome/Demo/sample_1.fq.01, Input=/home/team/genome/Demo/sample_1.fq.00,/home/team/genome/Demo/sample_1.fq.01</ns:description>
> <ns:annotation />
> <ns:initiator ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8" />
> </ns:workflowInvoked>
> -------------------------------------------------------------------------------------------------------------------
> Status: invokingService
> <ns:invokingService infoModelVersion="2.6"
> xmlns:ns="http://airavata.apache.org/schemas/wft/2011/08">
> <ns:notificationSource ns:serviceID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8" ns:experimentID="Workflow1_b8721d2f-d131-4ec3-bbb3-6fe12f528ed8" />
> <ns:timestamp>2013-04-11T09:15:42.240+09:00</ns:timestamp>
> <ns:description>thread=/home/team/genome/Demo/sample_1.fq.00, refIndexFile=/home/team/genome/Demo/sample_1.fq.00, bwdFqFile=/home/team/genome/Demo/sample_1.fq.00</ns:description>
> <ns:annotation />
> <ns:request>
> <ns:body>
> <n1:invoke_InputParams
> xmlns:n1="http://airavata.apache.org/schemas/gfac/2012/12/bwa_aln_bwd/xsd">
> <thread>/home/team/genome/Demo/sample_1.fq.00</thread>
> <refIndexFile>/home/team/genome/Demo/sample_1.fq.00</refIndexFile>
> <bwdFqFile>/home/team/genome/Demo/sample_1.fq.00</bwdFqFile>
> </n1:invoke_InputParams>
> </ns:body>
> </ns:request>
> <ns:receiver ns:serviceID="bwa_aln_bwd_invoke" ns:workflowID="Workflow1_b8721d2f_d131_4ec3_bbb3_6fe12f528ed8" ns:workflowTimestep="0" ns:workflowNodeID="bwa_aln_bwd_invoke" />
> </ns:invokingService>
> -------------------------------------------------------------------------------------------------------------------------
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